ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX24723215 | MRC-5
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◣ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

KMT5B
FRG2C
GH1
FRG2
DDX23
MTF2
H3-3B
IFRD2
HEXIM2
LAMP1
CCNL1
CTNNB1
RNF151
CLTC
ZC3H6
FEM1A
DSTYK
PDE6D
COPS7B
UNK
EIF2D
CALR3
C19orf44
NOTCH2NLC
STX18
TMEM41A
TBL3
TIMM21
FBXO15
BRWD1
ABCF2
UBC
NCBP2AS2
NCBP2
MRPL21
IGHMBP2
CALCOCO1
DCP1A
UCKL1
ATAD2
TSNAXIP1
RANBP10
PAFAH2
PPRC1
PPP5D1
CALM3
CHPF2
GSPT1
TMEM199
POLDIP2
POLR2J3
SOD2
HMGB1
NOTCH2NLA
TMEM222
WTAP
WDR53
FBXO45
SPATC1L
CALM1
GATB
FOXJ3
CLPB
OPA1
NDUFS7
SSNA1
ANAPC2
RBL1
TSN
CCDC88A
SEC13
TOMM22
SPNS1
CALM2
LRP6
MRM3
GLOD4
AURKAIP1
ZSCAN22
CYCS
ORMDL3
NOTCH2
MRTO4
EMC1
TCF3
NDUFS3
KBTBD4
WDR74
RPL8
COPS8
STX16
TIMM22
KBTBD7
NMNAT1
LZIC
UBB
CCDC77
BTRC
NUP214
ZNF34
SMN2
SMN1
CNOT1
KMT2D
TMEM115
PEMT
MED23
TRIP4
SLC39A1
C16orf91
DOHH
CFAP410
ST3GAL2
POMZP3
SCAF1
RRAS
CHMP4B
SYMPK
FOXA3
KPNB1
CTDP1
ZNF337
BOD1
RPS3
GSTA4
AP2S1
PSMD3
TSSC4
IST1
ZBTB45
AMD1
PEX3
ADAT2
PRCC
AHCYL2
PNKD
RPS20
WASHC2C
AAMP
SNX17
EIF2B4
TOB2
TCEA2
ING3
CRTC2
HTRA2
DQX1
TSC1
GFI1B
PA2G4
FRA10AC1
UBE2B
CDKL3
GTF2H3
EIF2B1
CLEC16A
PHIP
DEXI
ADPGK
CKS2
ZNF212
SMPD3
THRAP3
NUF2
WASHC2A
HEXA
PEX26
NAGPA
KCTD9
CDCA2
KBTBD6
MRPL24
RPL22
DDIT4
ZFAND2A
USP30
TTC13
NUDCD1
MED15
ZCCHC4
PPP1R12B
HIKESHI
NOTCH2NLB
KDM5A
ZKSCAN2
TRIAP1
RPL18A
H2BC21
H2AC21
H2AC20
ZNF721
PIGG
NXF1
UBE2D3
ATP5MF-PTCD1
ATP5MF
SCNM1
LYSMD1
RPS6KB2
PKM
MCM7
AP4M1
PARL
OAZ3
FAM207A
RPS28
NDUFA7
WDR97
MAF1
MRPL9
ATG14
OSCAR
NDUFA3
INVS
ERP44
MAD2L1BP
USPL1
PNRC2
MICOS13
HSD11B1L
TMEM127
CIAO1
IPO11
SCRIB
KCTD5
RPIA
CDC25C
PANK4
HES5
C8orf33
GTPBP2
NPRL2
CYB561D2
ZNF444
NOP14
GRK4
WDPCP
MDH1
TMTC3
CEP290
RPS26
PPP1R12C
PHB
FAM53C
DNAJC11
FUS
TRAPPC3
TMEM79
SMG5
GPAM
DIP2A
TNFAIP1
IFT20
RANGAP1
DUS2
DDX28
EIF4A2
ZNF384
FARSA
CALR
C8orf58
CCAR2
ZW10
CYP51A1
BRIX1
SLC35B4
MAPKAPK5
MXD4
UBR2
ATXN2L
C1orf159
NME1-NME2
NME1
RBM42
SRSF11
ZC3H10
RPL41
MRPS15
ADNP
TMEM208
LRRC29
ZNF56
NUP153
UBQLN1
SCGB1C2
PGBD4
EMC7
PCID2
CUL4A
TBRG4
ALKBH3
BANP
KAT7
RLF
PSMF1
PEX14
DFFA
CHD2
BOD1L1
INTS9
HMBOX1
PSMD11
COMMD1
PINX1
MRPS35
KDM4B
MFN2
NKIRAS1
DNAJA3
UBE2Q1
SLC25A19
UBQLN4
LAMTOR2
CCT4
TOR1AIP2
TOR1AIP1
C19orf53
WBP1
INO80B
NSFL1C
HMGCL
DPP8
DCAKD
DUX4
GHITM
CCDC146
ZFYVE1
MTRNR2L1
MMACHC
CCDC163
TAF5
FBXW11
GID4
ATPAF2
PBLD
HNRNPH3
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
TRIP12
FBXO36
DPP9
TMEM70
ELOC
DCAF10
AP2M1
RIC8B
STK25
LRRC40
SPRYD4
SLC33A1
LUC7L
VPS37A
CNOT7
NMT1
RPL15
SCGB1C1
NOC4L
DDX51
TTC33
MDM4
MRPL20
PHF23
GABARAP
UCHL5
RO60
ENDOV
DOLPP1
AHCTF1
ZNF420
CIC
ZFYVE19
DNAJC17
PIGU
ARHGEF12
HNRNPAB
ZGPAT
ARFRP1
TEPSIN
NDUFAF8
EIF3F
NTAN1
FBF1
SP2
RPL29
RBM6
CSRNP2
SPTLC1
MRPL58
TCF12
COMMD9
H2BC5
H1-4
LETM1
STAU1
ACOX3
IDH3B
DNAJB12
PHF12
RCL1
CCP110
SMARCAL1
CANT1
ABRAXAS2
LONP1
CATSPERD
TFPT
PRPF31
MTMR2
SUFU
ACTR1A
RALBP1
BIRC5
PHF13
SECISBP2
TRMT44
GFUS
UBL7
SNAPC3
HSP90AB1
SUPV3L1
ARF4
GTF2H4
HSP90B1
GTF2I
TSC2
NTHL1
GTF3C5
CTU1
ZFPL1
CDCA5
MTRNR2L2
MSH3
FDPS
DHFR
COQ9
CIAPIN1
DDX49
COPE
DNM1L
ARHGAP9
JOSD2
ASPDH
HSPA5
H2AX
DDX1
COG2
ZNF749
GABPB1
SART1
ZSWIM8
CHCHD1
SNRNP70
PIK3R3
RPS7
RCOR1
MRPS16
SSBP1
DCAF8
RPL12
LRSAM1
SNX1
CIAO2A
TOP3B
TRAF7
MARS1
RAB5C
TMEM262
TMEM59
MRPL39
BOLA1
DCAF1
WASHC5
NSMCE2
DESI2
RWDD1
NDUFV1
WAPL
CAND1
TNFRSF12A
THOC6
HCFC1R1
ODF3L2
CHCHD3
TRAK2
STRADB
B3GALNT2
IP6K2
SOX6
C11orf58
SF3A3
PNRC1
CRBN
VCPIP1
C8orf44-SGK3
TLE3
SRSF2
MFSD11
COX7C
SLC24A1
INTS14
SLC7A6OS
PRMT7
GTF2H2C_2
CCDC59
TTC4
PTEN
KLLN
WDR87
SIPA1L3
FBXO46
TEKT2
ADPRS
IPPK
DPY19L4
MCU
H3C13
H2BC18
SLC3A2
PSMD2
TRMT61B
H4C15
H4C14
POLG
USP48
SKIV2L
NELFE
PRKACA
RPS19
PABPC1
PIK3IP1
BRF2
ZNF500
ATF4
SRSF1
H4C11
TMEM242
METTL9
BICD2
THYN1
ACAD8
PLEKHM3
FAM228B
SIRT2
NFKBIB
SMIM13
PSMD4
MTRNR2L8
SSR3
SERBP1
MUS81
CFL1
H3C15
H3C14
H2AC19
H2AC18
MANF
FAM149B1
ECD
GTF2H2C
UBE3B
ZNF148
TIMM13
TACO1
GFM1
NDUFB5
MRPL47
CCDC90B
RCOR3
RPS16
SRRD
HPS4
VIRMA
TFRC
TARBP2
MAP3K12
RPLP1
TMEM217
TBC1D22B
COQ7
ASXL1
TRUB1
ZER1
RUVBL1
COA6
COPS7A
NOLC1
CAPN10
LARS1
UBA52
RFXANK
BORCS8
CMTR1
SESN1
EIF4A1
BMS1
MYLK4
CDKN2AIPNL
SPATA25
HAGH
FAHD1
POLR2E
PCBP2
CFAP20
KDM4A
SPRED1
NLK
ZC3H3
REXO1
RPLP0
CACTIN
SF3B2
GAL3ST3
EEF1A1
EEF2
USP15
CLP1
XRRA1
SPCS2
BUB3
KAT8
WNK1
NDUFAB1
ATRIP
PHB2
PTDSS2
WBP2
TMEM230
BUB1B
WRNIP1
ZNF518A
PARK7
KPTN
NEURL2
CTSA
B4GALT7
SRP68
GALR2
KMT2B
EMP3
ZFYVE28
GPANK1
ZNF225
RNASEH2C
PPAN-P2RY11
PPAN
ANGPTL6
HIF1AN
SLX1B
SLX1A
FAF1
BOLA2B
CSNK2B
CWC25
SLC4A2
CDK5
XPOT
BOLA2
VCP
TIGD6
HMGXB3
PALB2
DCTN5
TATDN3
NSL1
MRPS11
MRPL46
PTBP1
RANBP2
EIF2S2
SELENOH
CEP350
WDR25
WARS1
CCDC150
ZNF189
MRPL50
OAZ1
SNRPD3
GUCD1
TEFM
C5orf51
SEC11C
RPL3
SEPTIN9
RERE
RPP30
NDUFS2
ADAMTS4
MEIOSIN
CFAP99
UBN1
GLYR1
NABP1
POLR3D
RPL23A
RAB34
C19orf48
DGAT1
NOL10
ZNF140
CHCHD6
RTF2
SUMF1
SEC61A1
FASTKD1
TRMU
SPHK2
RPL18
LRCH4
FBXO24
CDK8
RAB1A
SUGP1
MAU2
MRPL3
RAD23A
CCNT2
C12orf43
PHAX
WDR4
SMIM12
NCDN
KIAA0319L
CCDC124
ZNF451
FAM156A
TMEM69
GPBP1L1
CASC3
PPIA
VPS33A
GPAA1
EXOSC4
ZNF2
ZNF527
PANK3
H4C12
FAM156B
SDE2
CLDND1
PEPD
HIRIP3
RTTN
CNPY2
GET3
IPO7
COMMD2
CAPN15
CNIH4
FAM83E
TOP3A
SMCR8
SFSWAP
RAD54L2
RPS3A
ZBTB4
SLC35G6
POLR2A
SNAP47
UBAC1
TOP2B
JMJD4
RPL6
ZNF133
STMN3
RTEL1
TTBK1
CNOT4
AKIRIN2
ZNF805
AP5Z1
RASEF
CTF1
BCL7C
MRPL48
FANCD2
CDK5RAP1
PCNP
MRPS23
CCDC86
ATP5PO
SRPRA
SPRYD3
TOR1A
ABT1
L3MBTL2
CCNC
TSFM
DYRK1B
MRPL44
USP35
KCTD21
PKN2
DDX46
INTS1
EIF2B5
TUBGCP3
TIMM50
ZNF335
LRFN3
BOLA2-SMG1P6
MAGOH
SEL1L
TBC1D22A
SCAMP3
DUS3L
SERPINI1
PDCD10
REXO4
ADAMTS13
USP42
SURF6
TAS1R1
NOL9
RBSN
TMEM258
FEN1
MRPL55
DRG2
FAM133B
CIAO3
EIF1
FAM89B
GATAD2A
RPLP2
PIDD1
CLCN7
HNRNPL
FAM227B
DTWD1
SLMAP
HBS1L
MTR
AARS2
CCNI
IARS1
PPP6C
PSME3
ZC3H11A
ZBED6
FAM187A
RPTOR
ZNRD2
DYNC1I2
ACTRT3
MRPL4
FBXW2
ZBTB7B
API5
SERP1
EIF2A
PDCD4
UFSP2
C4orf47
EFTUD2
CCDC103
TMEM186
PMM2
RAB5IF
C12orf73
TMEM160
MXI1
TMEM43
CHCHD4
TFEB
EIF5
MON2
ZNF26
PPIL4
GTF2H2
PSMD8
RANBP1
C6orf47
ECSIT
VIPAS39
AHSA1
APTX
C6orf89
DNM2
TVP23B
LTO1
NUS1
GARS1
ATG7
PCM1
ACAD9
SH2B1
VPS4B
ZNF554
TBCCD1
DNAJB11
EIF3C
WDR11
TBCB
POLR2I
OVOL3
MYLIP
NFYC
WDR43
VPS50
HEPACAM2
AJUBA
EIF3CL
TOB1
ATP6V1G2
SRP9
ZNF567
CBWD5
RAD52
MIA3
SNRPD1
ARFGAP2
FBXO48
APLF
NOP53
ARHGEF7
DVL2
TUBGCP6
ERLIN2
BDP1
ZMPSTE24
POR
RPGRIP1L
FTO
ZSWIM9
LIG1
NFKBIL1
STOML2
EIF3D
PRDX1
AKAP8
ZSWIM7
TTC19
RBM28
MAN2C1
HUS1
RFX1
MRPL37
CYB5RL
ZNF419
VAPA
ATP6V0B
LANCL2
CCND3
LY6G5B
ATP5MPL
PCP2
NBPF1
MTMR9
TPGS1
DHX33
THOC1
UMPS
FAM204A
FAM222A
CBWD2
SSU72
FAM185A
POLE3
C9orf43
NCOA3
TRIP10
GPR108
ARNTL
YIPF2
TIMM29
TXNDC9
EXO5
EIF5B
TXN2
TUBA1B
POLR3F
DZANK1
SCAMP4
ADAT3
STK17A
CDK11B
PNPLA6
EIF4A3
TRMT2A
SESN3
PMPCA
ENTR1
GTF2IRD2B
FAM193A
ZMYND10
UBR4
TUFM
YWHAG
PPP1R8
TSR1
SGSM2
ADK
VDAC2
CHMP1B
INTS12
GSTCD
EXOSC3
WDR18