ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX535453 | A-375
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◣ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

PHC2
EXD1
CHP1
SEMA6A
H4C15
H4C14
DPY19L4
STX16
FAM98B
STX18
DDIT4
MTRNR2L2
MSH3
DHFR
IST1
MRPL21
IGHMBP2
H4C12
H4C11
SAR1B
GSTA4
NUF2
GBA
AAR2
FRA10AC1
TUBGCP3
NR1H3
ACP2
C17orf75
SMARCD2
H3C13
H2BC18
SLC44A1
NME1-NME2
NME1
UCHL5
RO60
SF3A3
FEM1B
DMAP1
H3C15
H3C14
H2AC19
H2AC18
MTRNR2L1
H4C5
TPRKB
RAD54L2
WDR74
GALK2
COPS2
RCAN1
CCDC200
TRPV2
JRK
GTF3C3
SLC20A1
PHLDA1
RRP15
RASSF5
H1-2
H3C3
H2BC3
RBBP5
SNAP47
JMJD4
MTRNR2L8
RARS1
EIF1AD
BANF1
NPAS4
TMEM107
DSTYK
TBC1D19
VWA8
DCAF10
RPL37
ATR
IFRD2
H2BC5
H1-4
AP3S2
FLOT1
IER3
TATDN3
NSL1
EIF2D
H4C4
S100A16
TOP3B
MRPL16
CDKN2AIPNL
NDUFB7
SELENOH
ACOT7
RPS7
RPTOR
STX3
USP30
CDK5RAP1
RAB5IF
MAN2C1
KMT2C
TRIB3
NDUFAF1
TSEN15
DHRS3
SCNM1
LYSMD1
NDUFA12
TRIP4
OGT
HPCAL1
BFSP1
DCP1A
ZSCAN30
FCGR2A
H2BC21
H2AC21
H2AC20
PCID2
CUL4A
C12orf73
SIRT4
CSRNP1
GTF2H2C_2
GTF2H2C
SPOP
KLHL20
DRG2
YWHAE
STAT3
RPS6
SPRY4
SNRPB2
E2F6
SSBP1
CLUAP1
C16orf90
LAMP1
COMMD2
S100A2
VIRMA
TACO1
TEFM
YARS1
S100PBP
UCKL1
WDR36
HEXA
BNIP1
C11orf49
ZNF212
METTL9
GSTP1
IRS2
SLC24A1
INTS14
TRIAP1
PEX3
ADAT2
MTF2
LRRC47
MANBAL
NDUFS3
KBTBD4
ZNFX1
JUNB
VPS25
AP3B1
WDR24
HMGB1
USPL1
EEF1A1
VANGL2
ST3GAL2
PLEKHM3
TMA16
LARS2
KANSL3
FER1L5
TEKT2
ADPRS
DPY19L3
SPATA24
ADNP
H3C2
H2AC4
H4C2
RTN4
WWP2
MRPL44
INTS12
GSTCD
COL23A1
IFI16
PYDC5
SPATA25
NEURL2
CTSA
ALG10B
TMEM101
EIF3G
ADPRHL1
STAT6
FBXW2
IPO4
UNG
ALKBH2
GTF2H2
GPRC5A
GAB2
PDE6A
CCNL1
PSMF1
RPL32
TMEM256
NLGN2
CHD2
MRPS23
NECAP2
SNX17
EIF2B4
DNAJC25-GNG10
DNAJC25
TOR1AIP2
TOR1AIP1
DDX1
DNAJC24
DCDC1
S1PR2
TVP23B
DPP9
NOC4L
DDX51
MRPL3
SNRPB
ARIH1
EXOC3L1
E2F4
CCND1
PMPCA
ENTR1
TTPAL
VWA5A
DDX23
NDUFS7
SLC3A2
TMEM242
DMAC1
ACBD6
CTSC
ZNF391
AGMO
RNF151
TBL3
PAFAH2
NFXL1
GGNBP2
H1-3
WDR11
RTF2
H4C6
HTR5A
ARHGEF12
ALG10
NDUFC2-KCTD14
NDUFC2
SSBP2
SREK1IP1
CWC27
EFNA1
RBM28
RAB18
AURKAIP1
STMN3
RTEL1
TPR
ODR4
NCBP3
ATF3
ANKRD18B
CASC3
ZC3H6
RCOR3
RPS8
TRUB2
COQ4
POGZ
TUBB1
NOTCH2NLC
RPS2
DPH7
RINT1
INO80C
ITGA3
ZNF827
KBTBD6
RPL26
TRIB1
INTS5
GMEB2
SERPINA3
CCNC
INTS1
DIAPH1
TEX46
KDM1A
CCDC107
DRAP1
C11orf68
COX16
IQSEC3
CHD1L
PRKAB2
ZNF830
CCT6B
RACK1
KCNMA1
RAB7B
LRRC37A3
SRFBP1
TESK1
PIP5KL1
ZBTB45
MTAP
DPP8
SLC33A1
EDC4
SH3GL1
CHAF1A
ODC1
ZMPSTE24
ZSCAN25
DUS1L
MTERF1
FZD1
MNAT1
PRKCE
AVEN
CPLX2
RRN3
CDC73
THAP5
DNAJB9
GRAP2
PFKFB4
CHI3L2
UCN2
H2AX
MUS81
CFL1
SLC25A51
RBM45
PDE11A
SCARF1
RILP
COG2
FAM227B
DTWD1
RGPD1
RGPD2
UQCC1
UFSP1
ACHE
MED23
TTC4
BAGE4
BAGE3
BAGE
SEC16B
GTF2I
RFXANK
BORCS8
C10orf88
DUS2
DDX28
GOSR1
DHX8
ANP32E
ADAD2
KNL1
TAF1C
MRPL58
PRADC1
CCT7
H2BC8
H2AC8
PSMD6
PRRG2
NOSIP
OTUD7B
CSNK1D
ATXN2
RCC1
H3C10
H2BC14
H2AC14
KMT2D
ATP5MF-PTCD1
ATP5MF
TTC33
WNK1
TRPC4AP
ITGB3BP
EFCAB7
NOB1
RPL11
METTL15
KIF18A
COQ5
WWTR1
NOC3L
CFAP298-TCP10L
CFAP298
FAM133B
MRPL38
SUPT5H
H4C3
H1-6
SRA1
WWOX
BRD2
MACC1
BCL9
HEXIM2
ORMDL3
CCDC86
POLDIP3
TIGD1
EIF4E2
CPPED1
H1-0
GCAT
REX1BD
TEX9
RFX7
TMEM238
RPL28
NFATC2
SOX10
BANP
BOD1L1
NCOA3
SRSF6
PPP4R3B
PSMB6
TUT1
RCC1L
ZNF106
SNAP23
ZNF253
FXYD1
LGI4
ZER1
RPS27
RAB13
SLC35A3
ANKRD40
ZBTB37
MTHFS
ILVBL
RUVBL1
ZC3HC1
VPS72
BICD1
NSUN4
ATF6
CALR3
C19orf44
RPL23A
RAB34
MRPS14
INPP5F
SNTB1
EIF4A2
NBPF1
RFX3
TTI2
HNRNPA1L2
MRM3
GLOD4
ZSCAN22
ZC3H10
RPL41
ZNF554
TP53BP2
NHEJ1
TNFSF14
SPIN2B
TMEM40
POLR2J
LSM8
LRRC37B
TFAP2B
TRIM60
RPL29
MRPL39
WASHC5
NSMCE2
RPS3A
RPS14
DDX19B
AARS1
FAM189B
SLC36A1
CERS2
ANXA9
C7orf61
NMNAT1
LZIC
FUS
RPL13
SNRPE
LMNA
SIT1
CFAP20DC
CT45A3
LDAH
SLC26A2
EXD2
RNF216
USP2
HOOK2
CCDC88A
TMEM115
RPL13A
MCOLN1
SNX19
UTP3
ANAPC5
C16orf72
ARID1A
BCL3
AP4E1
RPL7
RDH10
ZNF708
GPR176
EPHA3
ZNF56
SDHAF3
VPS45
MYBPC3
PYGB
ABHD12
AK3
PCOLCE
SEC13
C16orf91
TAF5
TRA2B
CHCHD2
MFF
CAAP1
LTBR
NAA20
BBS1
SEC22B
EMC3
PDE6D
COPS7B
CBWD2
NBN
MBTPS2
PARP4
KCTD3
VIM
TENT4A
TRAF1
ZCCHC4
SART1
LIG4
TPK1
YJU2
ABHD13
THOC5
NDRG1
TBL1X
RBM14-RBM4
RBM14
PKIG
TAF13
DCUN1D5
H3C8
H2BC10
PBK
CDH19
CWC25
MRPL48
LRRC59
HNRNPH1
MKRN1
LRP6
NOTCH2NLB
C8orf33
WBP1
INO80B
AARS2
LSM5
AVL9
NFE2L2
ZNF791
ZNF490
RAF1
ITPKC
COQ8B
FAM228B
ELOB
SF3B6
LDHA
NDUFAF5
ESF1
OSBPL11
CEP120
NACA
TRIM46
KRTCAP2
NREP
GLIPR1L1
CAPS2
LYPLAL1
PLEKHG5
PPP1R1B
POLG
FANCD2
POLR3B
FRG1
LAMTOR5
RMDN2
PCOTH
MIPEP
UNK
POLR2J3
MTR
TCTE3
ERMARD
RANBP6
MARCHF7
ZNF564
RPL7A
MED22
CSKMT
C11orf98
COIL
HOXB3
STEAP1B
NOTCH2
SEC61A1
VPS33A
EIF1
CDC16
DEF8
RFFL
IDH3B
ARMH3
DDX5
GPATCH4
MEOX2
DNM1L
REXO4
ADAMTS13
FAM187A
GTF2IRD2B
MRPL40
HIRA
ID1
TOMM20
SMG8
ZNF45
H2BC12
H2AC12
CRB1
INTS2
RASA3
SLC25A21
APH1B
LTBP1
USP4
VWA1
MAPRE2
EML2
MBNL2
PARP2
NSA2
GFM2
STMP1
ZBTB40
LONP2
ABCC11
RBM17
TUBA1C
YBX3
ZNF443
SURF6
PSMB4
FBXO38
CBX5
HNRNPA1
H2BC11
H2AC11
TTC26
KDSR
NANOS3
ERMP1
H3-2
LOXL4
ZNF205
COL16A1
BOD1
DNM2
RPL5
LTA4H
PNPO
CALM2
SRSF5
ZNF76
WIZ
GNPAT
C1orf131
STK4
LUC7L3
ALDH9A1
ATP5F1E
CHD1
ELAVL3
PLPP4
SCGB1C2
KDM6B
ATAD2B
PCGF2
SPRY2
SH3TC2
CT45A9
CT45A8
CT45A2
ZNF337
SPRED1
FBXL18
TAF3
SAMD10
PRPF6
TIMMDC1
TMEM170A
IPP
GOLGA4
IL6R
MAGEA2B
MAGEA2
XKR7
FAM78B
DCAF8
UBXN1
RPS21
EFCAB2
HEMK1
C3orf18
TAGLN2
KMT2E
MMAA
H4C8
EPB41
ZNF561
TMCC2
ZNF609
PLA2G4C
MYPN
CLTC
COMMD1
CCT4
TRMU
MCL1
SACM1L
RPL37A
GRPEL2
MLEC
DHX9
PEX2
COA1
FCRLB
CTNNB1
TMEM41A
SNRPD1
RNF6
BORCS5
LARP1
SPRED2
RHBDF1
DUSP4
PRNP
IFT46
GIP
HIKESHI
RBSN
RPL35
ARPC5L
KIAA0895
LSM12
G6PC3
DCLRE1B
AP4B1
CAPRIN2
ARGLU1
H2BC13
H2AC13
APP
ABCA1
WASHC2C
TNFRSF12A
THOC6
HCFC1R1
CCDC90B
PTPN6
C12orf57
PPP2CB
PTPN13
GFOD2
GTPBP3
ANO8
TIMM10
APBB2
PDE8A
OPN3
CHML
CTHRC1
CLDN6
BACE1
SPRYD4
ACOX3
TRMT44
BUD13
DIDO1
GID8
SLC35A4
APBB3
ABCA3
LTBP3
LIFR
OR2L13
OR2AJ1
ABCA10
MRPS15
MDM4
THOC3
SLC35E1
DYNLL1
SFPQ
SEPSECS
H3C12
H2BC17
H2AC17
SRSF9
ZNF282
DISC1
SPIDR
ABR
PKD2L2
HMCN1
FXYD3
FLRT3
ZP4
ARL14EP
EIF2B3
COMMD4
BAIAP2
TMEM167B
MC1R
ESD
RPL30
TUBB3
SCRN1
ABCF2
TMEM199
POLDIP2
SOD2
WTAP
TRAPPC3
MAPKAPK5
ALKBH3
RPL12
LRSAM1
SRSF2
MFSD11
BMS1
SH2B1
AHCY
ZBTB17
IER5L
DNAJB1
CNP
THEM4
TECR
GABPB2
ARMC8
ZSWIM4
TMEM106B
SUPT20H
ZNF846
SRRM1
GRHPR
KDM8
SLC6A15
ISLR2
EMP1
FOXJ3
MANF
SLC9B1
PDE4DIP
NECAP1
H2BC7
TAF10
H3C4
H2AC7
KLHL9
NDUFA4L2
INPPL1
ARCN1
UBAP1L
RPS28
NDUFA7
PANK4
HES5
C2orf42
C18orf25
SLC25A28
PIKFYVE
MTRF1
ABHD2
INTS6
ATF1
HM13
ANKRD13D
RGL1
ARPC5
GEM
SNTB2
NAA16
USP28
ZNF579
DAB2
PCARE
NAGPA
PSMD11
TMEM186
PMM2
SRSF7
TRMO
H2BC4
H2AC6
GNAI2
BLOC1S2
GPR89A
ADAM17
UTP25
RBM7
C11orf71
NR3C1
MAMDC2
SPATC1
TSN
FAM207A
CDC25C
FAM53C
MTMR2
CCDC59
MTMR9
ZNF513
MCAT
ATP6V0D1
AGRP
MAT2A
FNIP1
MRPS18C
HELQ
ABCB10
TSSK6
NDUFA13
SLTM
FGFBP3
MAGI2
DGAT1
LRCH4
FBXO24
PCIF1
SMG7
BCAR3
PLGRKT
NDUFAF6
ZBTB38
DPH6
B9D1
H4-16
H2AJ
CASP7
CES4A
TIMP1
TIGD6
HMGXB3
CCDC174
SNF8