ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5501661 | A-375
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◣ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

GSTA4
H4C15
H4C14
MTRNR2L2
MSH3
DHFR
PHC2
NUF2
COL23A1
MTRNR2L8
FRA10AC1
MTRNR2L1
EIF2D
DSTYK
GBA
DCP1A
TRIP4
S100A2
H1-2
TMEM107
RAD54L2
STX16
HMGB1
USPL1
DRG2
CDK5RAP1
RBBP5
TBC1D19
POLDIP3
SCAND1
CWC25
SF3A3
NDUFS3
KBTBD4
H4C11
RPL37
SMARCD2
DHX8
RPS7
SAR1B
RNF151
TBL3
WDR74
ATP5MC2
STX18
H1-3
S100A16
CTNNB1
AP3S2
NME1-NME2
NME1
TRIAP1
SLC24A1
INTS14
MRPS23
H2BC21
H2AC21
H2AC20
PLEKHM3
RCAN1
MTF2
ZNF296
GEMIN7
CCNL1
UTP3
ZBTB45
SELENOH
TTC26
RGPD1
RGPD2
CRB1
NBPF1
UCKL1
DMAP1
BNIP1
H3C13
H2BC18
SECISBP2L
H3C15
H3C14
H2AC19
H2AC18
MAN2C1
MLEC
MITD1
RPS6
SERPINE2
GTF2H2C_2
GTF2H2C
SSBP1
RAB5IF
STAT3
ERCC1
SIRT4
CCDC200
DPP9
TATDN3
NSL1
FAM3C
AURKAIP1
TUT1
WDR36
YWHAE
PPP6R1
YIPF2
TIMM29
LRRC37A3
H4C6
LAMP1
RPS2
MYO9B
HAUS8
GTF2H2
INTS12
GSTCD
ATF6
NOB1
SMG8
TSEN15
RPL12
LRSAM1
EFCAB2
NPAS4
FOXJ3
PSMD3
PSMF1
RBM15B
TBC1D13
MDM4
H2BC5
H1-4
POLG
SNAP47
JMJD4
LY6K
RPS27
RAB13
RARS1
HPCAL1
TBL1X
ALG10B
NDUFAF1
PDCD6
H3C3
H2BC3
MRPL21
IGHMBP2
RPS20
DDIT4
C17orf75
JRK
PTPN6
C12orf57
MRPL16
KBTBD6
UBQLN4
LAMTOR2
RANBP2
GTF3C3
KMT2C
TACO1
H4C12
TMEM222
FRG1
SAMD4B
TCEA2
SCNM1
LYSMD1
CDC73
U2SURP
SDHAF3
NR1H2
NOC4L
DDX51
FAM227B
DTWD1
ZNFX1
KNL1
CALHM2
COMMD9
ATP5MPL
SRSF4
STX1A
CALCOCO1
FAM98B
CCDC59
TEX46
KDM1A
GNAI2
COMMD2
SLC27A5
MED23
TAGLN2
LARS2
PMS2
AIMP2
MKRN2OS
MKRN2
SSBP2
SEC13
ZER1
NDUFC2-KCTD14
NDUFC2
GTPBP6
FXYD3
CCDC90B
SLC44A1
GAPDH
SLC35E2B
SPRY4
BCAR1
KLHL12
NSFL1C
NOTCH2NLC
NUP107
COX5A
MRPL38
TSSK6
NDUFA13
MAPK1IP1L
METTL9
ZBTB37
TAMM41
CLUAP1
C16orf90
TMED2
NDUFA12
USP3
NOTCH2NLB
NKIRAS1
RPL15
RUVBL1
CDKN2AIPNL
TSPAN10
NPLOC4
SLC25A32
DCAF13
NCBP3
CDK2AP1
MRPL58
TSC2
NTHL1
TVP23B
MTIF2
HEXIM1
ELAVL3
DDX1
ANP32E
KRR1
PRKCE
DCAF10
MED18
IQCH
AAGAB
USP4
RPS3
PEX14
DFFA
UBOX5
FASTKD5
WDR24
DNAJC24
DCDC1
ITPKC
COQ8B
GALK2
COPS2
SLC25A51
AGK
KANSL3
FER1L5
YWHAZ
SNRPE
SNRPB
TTC1
HEATR1
PPRC1
NMNAT1
LZIC
INTS1
ARL14EP
PHLDA1
KDM8
PEMT
CIAO3
NLE1
H4C5
IGFBP6
SOAT2
ADPRHL1
ZNF212
PCID2
CUL4A
ID1
SACM1L
NFE2L2
SEC16B
RPS28
NDUFA7
PSMD11
WASHC4
POMP
STARD4
SLC20A1
VPS25
ACTN1
UQCC1
PTEN
KLLN
MRPL53
MAT2A
ITFG2
RINT1
INTS5
METTL15
KIF18A
TTPAL
H4C4
VPS4A
USP30
DPY19L4
SNAPC5
H3C8
H2BC10
CCDC88A
CALM2
AAR2
R3HDM2
INHBC
MRPL1
PSMD9
HPD
H2BC8
H2AC8
NUP153
H3C2
H4C2
MBTPS2
ZSCAN22
PANK4
HES5
TOR1AIP2
TOR1AIP1
YARS1
S100PBP
MRPL19
ASB6
LONP2
ABCC11
CCDC15
EIF3E
MICALL1
ST3GAL2
ATP5MF-PTCD1
ATP5MF
UBL7
RAD23A
AP5Z1
NSA2
GFM2
RHOT2
BCL3
ANGPTL4
POLR2J3
SSNA1
ANAPC2
ADNP
TTC4
DDX59
PRKCSH
CCDC151
VTA1
NMBR
ZBTB40
PLEKHB1
TMEM242
ZC3HC1
UBA2
COIL
ARL2BP
PDE8A
WASHC2A
ZCCHC4
CCAR2
C8orf58
FBXO46
MEIOSIN
BUD13
CREBL2
WIZ
RMDN2
H4C9
EEF2K
CALM1
TRMU
FBXW2
ALDOA
ANXA2R
ELAVL2
SPRY2
EPHA3
ATXN2L
BANP
MRPL40
HIRA
HDGF
TTI2
H4C3
H1-6
VPS33A
LZTR1
H2AC4
ZNF594
CCDC174
ELK4
GORAB
SLC25A13
GARS1
NCOA3
SNRPB2
ARID2
SULT6B1
FRMD8
SLC25A45
TMEM199
POLDIP2
PARK7
TRMO
SLC35E1
PRRG2
NOSIP
GOSR1
OGT
ZNF3
MRPL10
LRRC46
DPH7
CHD1L
NRF1
PRKAB2
PPIP5K2
GIN1
H3C12
H2BC17
H2AC17
MACROH2A1
B3GAT3
H3-2
PSPC1
TRMT61B
STAT1
RPL27
LSM12
G6PC3
BBS1
GOT2
PA2G4
ATR
TRPC4AP
SLC35E2A
H4C8
AP3B1
TRIM62
TIMM22
WBP1
INO80B
SMG7
NECAP2
CATSPERG
RPL10
COL16A1
MTMR2
ECSIT
ZMPSTE24
LDAH
SLC39A13
KIF15
KIAA1143
NUP188
DOLK
E2F6
CSNK1G3
DRAP1
C11orf68
TCHP
ASB2
ALDH7A1
TEFM
PARP2
TSNAX
CCDC125
UCHL5
RO60
ZSCAN25
TMEM101
KLHL20
RNF168
CDK12
ZNF106
SNAP23
DHRS3
WWTR1
RHBDF1
LRRC52
PAFAH2
MRPL24
ZNF26
MRPS31
EXOSC8
ALG5
AP2B1
ZNF770
SRRT
MFAP3
FAM114A2
ERLEC1
ASB3
IFNAR1
DISC1
TMC1
CALR3
C19orf44
NOTCH2NLA
TMEM79
SMG5
CASC3
TAS1R1
NOL9
SH2B1
TUFM
PDE12
BFSP1
CT45A9
CT45A8
CT45A2
MRPS15
EPRS1
POLR3E
VPS72
C1orf53
KEAP1
PRCC
ZC3H10
RPL41
COG2
FAM149B1
ECD
PPP6C
SEC22B
AGMO
SART1
LRRC59
AP1G1
USE1
NFKB2
TSG101
CENPBD1
H2BC11
H2AC11
BCAT2
ZNF185
COPS6
RRP9
PARP3
SYT5
EIF3H
LIMA1
AMOTL1
TUBB1
ZNF721
PIGG
GID4
ATPAF2
USP48
RPS3A
NME6
IPO4
LRWD1
ALKBH4
MRPS14
COQ5
PYGB
AXL
TNFSF14
PCBP2
SRSF7
TPT1
FBXO38
SAMD10
PRPF6
PMF1-BGLAP
PMF1
MUL1
NAGK
CNOT2
ZNF668
ZNF646
BCAS4
KRT18
TESK1
SPATC1
DDX23
CHMP4B
RPL29
COX7C
AQR
NOC3L
DR1
AVPI1
FOSL1
ABCC3
NDUFS7
FANCD2
H2BC4
H2AC6
LENG8
AMACR
PPID
NANOS3
PRDM5
COMMD1
TEKT2
ADPRS
IPPK
SLX1B
SLX1A
BOLA2B
BOLA2
DDX46
TOB1
MCOLN1
ATP6V0D1
AGRP
SASS6
RUSF1
HNRNPU
SMIM14
LRATD2
VPS37B
DUSP6
FOXO3B
ILVBL
TFB1M
ILF2
ZP4
SCRIB
PRDX1
STIP1
PGLS
TTC32
OCEL1
DPY30
HTR5A
ARTN
NOTCH2
GPAM
CCDC124
BRMS1
B4GAT1
TSR3
GNPTG
GPS2
CBX5
HNRNPA1
SPRED2
H3C10
H2BC14
H2AC14
ISLR
COQ9
CIAPIN1
TOP3B
NOL11
ARL8B
PPP4R3A
TRMT6
MCM8
SEC14L1
MRPS24
WDR13
RFFL
SMIM38
C1QTNF3
TOMM22
STYXL1
ING4
LDHA
SEC11A
THOC5
VPS28
RPL7
RDH10
FGFBP3
ATRN
NFIB
FAF1
S100A13
CHTOP
TMEM126A
COPS4
HSPA8
PRR19
PAFAH1B3
ZNF697
TMPRSS5
PIGU
TFRC
RAD52
MAML3
CWF19L1
CSRNP1
H2BC13
H2AC13
FHL2
TNFRSF6B
TIGD6
HMGXB3
RPTOR
STOML2
PNPLA6
MPHOSPH10
MCEE
USHBP1
BABAM1
AAAS
ARID3B
FEM1B
SCO1
ADPRM
STT3B
TOMM7
TEX261
TRIM46
KRTCAP2
RIN1
SNX17
EIF2B4
RPS6KB2
EEF1A1
HSPA9
ZNF350
MDN1
DMTF1
C16orf72
CSDE1
DBR1
KXD1
DSN1
OTOA
ARHGEF12
BMS1
ARHGEF7
SRSF10
NUCKS1
LMNA
YJU2
PKIG
TRMT10C
MSANTD2
TRNAU1AP
CSTF1
AURKA
NCOA7
ALG14
TP53I3
RASA3
ENTPD2
SMN2
SMN1
WASHC2C
DNAJB12
ZNF148
NDUFAB1
MRPL4
ZNF410
HIPK1
PARN
BFAR
ANKRD13D
RPL24
MNAT1
ADGRG1
INAVA
C11orf49
NEURL3
COPS7A
RBM28
RAD9A
TDG
ICE2
CLUH
RPL7A
MED22
VPS35L
TMEM223
TMEM179B
AGL
ADORA2B
CA5A
FAM228B
CEP350
SMIM12
FAM187A
EFTUD2
CCDC103
SF3B6
FAM168A
PLK2
RFC2
MRFAP1
CYB561
ISG20
MRPS21
LRRC49
DYNLRB2
THAP10
ZNF512B
PEX3
ADAT2
TMEM208
LRRC29
C19orf53
CCT4
DCAF8
AP5S1
NUP133
RPL38
SUMF2
TRMT1
NACC1
MAD1L1
H2BC7
H3C4
H2AC7
UBE2R2
RPL30
CAMKK1
RAB7B
FRG2
ZNF518A
FAM89B
ZNRD2
CUEDC2
MAZ
ADAR
FAM200B
SLC12A2
TMEM62
SH3TC1
CASZ1
UQCRB
FURIN
KIF21B
EHBP1L1
PNKD
AAMP
TOB2
LUC7L
KPTN
MIA3
EIF3L
ANKRD54
ZNF658
TMEM168
SRFBP1
PUM2
PDE6A
SPRYD4
GTF2H4
SPRED1
CCDC43
SLC26A2
TIMM23
PEX12
LSM5
AVL9
ZSCAN30
MAP2K2
PICK1
LOC112694756
ADAM15
KCTD5
SUMF1
HIRIP3
NOL7
PGS1
TAF1B
EXOSC6
UQCRC1
ZNF696
CXXC5
ATAD5
BTBD1
SYTL2
C8orf37
MED12L
FCRLA
TSSC4
POLR3D
EIF3C
EIF3CL
GNB2
THEM4
PURB
TPM3
GRPEL2
QTRT1
JUNB
SCAP
CLTC
HIKESHI
ADK
PPP1R15B
DYM
RCC1
METTL2A
ATAD2B
AATF
KDM4C
C11orf65
ITGA3
OR2L13
OR2AJ1
CT45A7
CT45A6
CT45A5
SPATC1L
SLC25A19
STAU1
DDX50
DDX18
TPK1
RAF1
COX7A2
MEMO1
DDX27
GRB7
SH3TC2
KRT28
ZC3H6
CYCS
SLC3A2
RPS13
PSMD6
RPL10A
C10orf88
CGGBP1
HINT3
C3orf38
MGST3
NFIA
GAL3ST4
NUP214
RPL22
H2AX
WASHC5
NSMCE2
RFX1
TXNDC15
THUMPD3
SOS1
ZNF846
GPATCH4
LGALS1
HIF1AN
GATAD2A
TPR
ODR4
DNAJC25-GNG10
DNAJC25
TRDMT1
GGPS1
ARID4B
SNF8
TAF13
BRF2
H2BU1
H2AW
RANBP6
YTHDF2
ZNF589
DCPS
DHPS
SCAF11
PRR25
CEP78
FZD1
MAP2K3
LEPROT
LEPR
UPF3A
FBXO27
NXF1
CHD2
UBA52
RPLP0
TSFM
UBR4
GET4
C1orf54