ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX367329 | 293
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◣ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

MTRNR2L2
MSH3
DHFR
MTRNR2L1
MTRNR2L8
COL23A1
RGPD1
RGPD2
BCAR3
NGB
DUX4
TIA1
POLG
POLR3E
NCOA7
DCT
LUC7L2
FMC1-LUC7L2
FMC1
TRIM7
HEXIM1
MTRNR2L9
SMARCC2
LTA4H
PAMR1
CCDC115
FBXO31
ILF2
FRG2
RAB11A
EIF4A2
PCGF2
PLXDC1
SRSF7
ALOXE3
HES7
H4C8
GTF2B
ELF1
WBP4
DPP9
ZBTB4
SLC35G6
POLR2A
BORCS6
SRSF2
MFSD11
BRMS1
B4GAT1
C19orf48
TOMM20
HSPA6
PSMA3
TUBD1
RPS6KB1
ARF1
SHF
ATF3
BBC3
TUBA1B
IER5
TAF4
H3-3B
ACTRT3
ZNFX1
MYNN
INTS6
SLC1A5
SFPQ
WDR74
KLF6
KNL1
MYLIP
POLDIP3
HNRNPH1
RBBP6
CDC25C
FAM53C
FBF1
PABPC4
RPL13
DDX5
HSPA8
ZNF143
ZBED9
H2AZ1
DNAJB14
CEBPA
RPL38
HMGN4
GSTA4
H4C15
H4C14
ADAMTS1
HNRNPDL
ENOPH1
H4C11
DDX23
MTF2
IFRD2
HEXIM2
LAMP1
CCNL1
RNF151
CTNNB1
FEM1A
ZC3H6
CLTC
DSTYK
UNK
PDE6D
COPS7B
CALR3
C19orf44
EIF2D
NOTCH2NLC
TBL3
TIMM21
FBXO15
TMEM41A
STX18
NCBP2AS2
NCBP2
ABCF2
BRWD1
CALCOCO1
MRPL21
IGHMBP2
UCKL1
TSNAXIP1
RANBP10
ATAD2
PPRC1
DCP1A
UBC
PPP5D1
KMT5B
CALM3
PAFAH2
CHPF2
GSPT1
TMEM199
POLDIP2
POLR2J3
WDR53
FBXO45
HMGB1
SOD2
NOTCH2NLA
WTAP
TMEM222
SPATC1L
GATB
CALM1
FOXJ3
CLPB
OPA1
SSNA1
ANAPC2
RBL1
TSN
SPNS1
CCDC88A
TOMM22
MRM3
GLOD4
SEC13
NDUFS7
ZSCAN22
CYCS
ORMDL3
MRTO4
EMC1
LRP6
TCF3
NOTCH2
AURKAIP1
CALM2
RPL8
COPS8
TIMM22
KBTBD7
UBB
BTRC
NUP214
ZNF34
CNOT1
NMNAT1
LZIC
TMEM115
PEMT
SMN2
SMN1
CCDC77
NDUFS3
KBTBD4
SLC39A1
C16orf91
DOHH
STX16
KMT2D
ST3GAL2
CFAP410
SCAF1
RRAS
CHMP4B
MED23
SYMPK
FOXA3
CTDP1
ZNF337
POMZP3
BOD1
TRIP4
FRG2C
KPNB1
RPS3
AP2S1
PSMD3
AMD1
PRCC
AHCYL2
PNKD
TSSC4
WASHC2C
AAMP
RPS20
IST1
TCEA2
SNX17
EIF2B4
ZBTB45
ING3
PEX3
ADAT2
CRTC2
PA2G4
CLEC16A
HTRA2
DQX1
UBE2B
CDKL3
DEXI
TOB2
ADPGK
CKS2
ZNF212
GTF2H3
EIF2B1
SMPD3
PHIP
THRAP3
WASHC2A
HEXA
PEX26
NAGPA
KCTD9
CDCA2
KBTBD6
MRPL24
RPL22
ZFAND2A
TTC13
TSC1
GFI1B
NUDCD1
FRA10AC1
DDIT4
MED15
PPP1R12B
HIKESHI
TRIAP1
ZNF721
PIGG
USP30
ZCCHC4
RPS6KB2
MCM7
AP4M1
NUF2
UBE2D3
NOTCH2NLB
NXF1
PARL
RPL18A
ATP5MF-PTCD1
ATP5MF
KDM5A
RPS28
NDUFA7
H2BC21
H2AC21
H2AC20
OAZ3
ATG14
ZKSCAN2
OSCAR
NDUFA3
INVS
ERP44
MRPL9
SCNM1
LYSMD1
PKM
MAD2L1BP
MICOS13
HSD11B1L
TMEM127
CIAO1
USPL1
FAM207A
IPO11
KCTD5
WDR97
MAF1
PNRC2
RPIA
PANK4
HES5
SCRIB
C8orf33
GTPBP2
NPRL2
CYB561D2
ZNF444
NOP14
GRK4
TMTC3
CEP290
PPP1R12C
WDPCP
MDH1
PHB
RPS26
TRAPPC3
TMEM79
SMG5
GPAM
DNAJC11
TNFAIP1
IFT20
RANGAP1
FUS
DUS2
DDX28
DIP2A
ZW10
CYP51A1
SLC35B4
MXD4
UBR2
FARSA
CALR
ATXN2L
C1orf159
MAPKAPK5
BRIX1
ZNF384
RBM42
SRSF11
ADNP
TMEM208
LRRC29
ZC3H10
RPL41
MRPS15
ZNF56
CCAR2
C8orf58
NUP153
PGBD4
EMC7
KAT7
UBQLN1
PCID2
CUL4A
PEX14
DFFA
TBRG4
RLF
BANP
ALKBH3
INTS9
HMBOX1
PSMD11
PINX1
MRPS35
MFN2
CHD2
DNAJA3
UBE2Q1
BOD1L1
SCGB1C2
SLC25A19
UBQLN4
LAMTOR2
NKIRAS1
C19orf53
COMMD1
WBP1
INO80B
KDM4B
HMGCL
DPP8
DCAKD
CCT4
GHITM
PSMF1
CCDC146
NSFL1C
ZFYVE1
MMACHC
CCDC163
FBXW11
GID4
ATPAF2
NME1-NME2
NME1
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
TAF5
TMEM70
ELOC
AP2M1
PBLD
HNRNPH3
RIC8B
STK25
LRRC40
SPRYD4
TRIP12
FBXO36
LUC7L
NMT1
TOR1AIP2
TOR1AIP1
RPL15
SCGB1C1
SLC33A1
NOC4L
DDX51
VPS37A
CNOT7
TTC33
MRPL20
PHF23
GABARAP
UCHL5
RO60
ENDOV
DOLPP1
AHCTF1
ZNF420
CIC
ZFYVE19
DNAJC17
PIGU
ZGPAT
ARFRP1
TEPSIN
NDUFAF8
NTAN1
SP2
RBM6
CSRNP2
SPTLC1
HNRNPAB
COMMD9
STAU1
ACOX3
ARHGEF12
MDM4
IDH3B
LETM1
DNAJB12
PHF12
RCL1
CCP110
TCF12
SMARCAL1
RPL29
CANT1
ABRAXAS2
EIF3F
MRPL58
LONP1
CATSPERD
TFPT
PRPF31
SUFU
ACTR1A
RALBP1
BIRC5
DCAF10
PHF13
SECISBP2
H2BC5
H1-4
TRMT44
GFUS
UBL7
HSP90AB1
SUPV3L1
MTMR2
GTF2H4
HSP90B1
GTF2I
ARF4
SNAPC3
TSC2
NTHL1
CTU1
ZFPL1
CDCA5
FDPS
COQ9
CIAPIN1
DDX49
COPE
DNM1L
ARHGAP9
JOSD2
ASPDH
COG2
ZNF749
SART1
GTF3C5
ZSWIM8
CHCHD1
PIK3R3
MRPS16
HSPA5
SNX1
CIAO2A
TRAF7
RCOR1
MARS1
SNRNP70
RAB5C
TMEM262
TMEM59
H2AX
BOLA1
RPL12
LRSAM1
DCAF8
DCAF1
WASHC5
NSMCE2
RWDD1
DDX1
NDUFV1
WAPL
DESI2
CAND1
RPS7
TNFRSF12A
THOC6
HCFC1R1
MRPL39
CHCHD3
TRAK2
STRADB
B3GALNT2
IP6K2
GABPB1
SOX6
C11orf58
SSBP1
CRBN
VCPIP1
C8orf44-SGK3
TOP3B
TLE3
ODF3L2
COX7C
SLC7A6OS
PRMT7
CCDC59
PNRC1
WDR87
SIPA1L3
FBXO46
MCU
TTC4
PSMD2
SF3A3
TRMT61B
TEKT2
ADPRS
SLC3A2
USP48
PRKACA
PABPC1
PIK3IP1
ZNF500
PTEN
KLLN
BICD2
THYN1
ACAD8
SLC24A1
INTS14
H3C13
H2BC18
SIRT2
NFKBIB
IPPK
SRSF1
SKIV2L
NELFE
SMIM13
PSMD4
SSR3
METTL9
SERBP1
BRF2
FAM228B
FAM149B1
ECD
UBE3B
ZNF148
GTF2H2C_2
PLEKHM3
TIMM13
GFM1
NDUFB5
MRPL47
CCDC90B
MUS81
CFL1
RPS16
RPS19
ATF4
TARBP2
MAP3K12
MANF
SRRD
HPS4
TMEM217
TBC1D22B
TMEM242
COQ7
TRUB1
VIRMA
RUVBL1
COPS7A
NOLC1
CAPN10
LARS1
UBA52
RPLP1
CMTR1
SESN1
DPY19L4
MYLK4
COA6
SPATA25
H3C15
H3C14
H2AC19
H2AC18
HAGH
FAHD1
POLR2E
ASXL1
RFXANK
BORCS8
CFAP20
CDKN2AIPNL
KDM4A
EIF4A1
TFRC
SPRED1
NLK
ZC3H3
PCBP2
RPLP0
SF3B2
GAL3ST3
CLP1
CACTIN
REXO1
BUB3
KAT8
WNK1
NDUFAB1
ATRIP
PTDSS2
WBP2
TMEM230
BUB1B
GTF2H2C
WRNIP1
EEF2
PARK7
KPTN
NEURL2
CTSA
TACO1
KMT2B
XRRA1
SPCS2
RCOR3
ZFYVE28
ZNF225
RNASEH2C
PPAN-P2RY11
PPAN
ANGPTL6
SLX1B
SLX1A
FAF1
BOLA2B
SRP68
GALR2
ZER1
ZNF518A
GPANK1
EMP3
CSNK2B
SLC4A2
CDK5
XPOT
PHB2
BOLA2
EEF1A1
TIGD6
HMGXB3
PALB2
DCTN5
CWC25
BMS1
MRPS11
MRPL46
RANBP2
USP15
WDR25
WARS1
CCDC150
ZNF189
MRPL50
CEP350
C5orf51
SEC11C
RERE
RPP30
MEIOSIN
CFAP99
EIF2S2
UBN1
GLYR1
OAZ1
VCP
RPL23A
RAB34
HIF1AN
PTBP1
NOL10
ZNF140
CHCHD6
RTF2
SUMF1
SNRPD3
GUCD1
FASTKD1
RPL3
NDUFS2
ADAMTS4
SPHK2
RPL18
CDK8
SUGP1
SELENOH
MAU2
DGAT1
RAD23A
CCNT2
SEC61A1
C12orf43
TATDN3
NSL1
PHAX
TRMU
LRCH4
FBXO24
WDR4
RAB1A
POLR3D
B4GALT7
NCDN
KIAA0319L
CCDC124
ZNF451
TEFM
MRPL3
FAM156A
TMEM69
GPBP1L1
VPS33A
ZNF2
SMIM12
ZNF527
PANK3
FAM156B
CLDND1
PEPD
SEPTIN9
HIRIP3
CNPY2
CAPN15
CNIH4
FAM83E
PPIA
TOP3A
SMCR8
SFSWAP
RTTN
UBAC1
GET3
TOP2B
NABP1
IPO7
COMMD2
ZNF133
RPS3A
TTBK1
CNOT4
AKIRIN2
ZNF805
AP5Z1
CTF1
BCL7C
FANCD2
PCNP
RPL6
MRPS23
CCDC86
ATP5PO
SRPRA
SPRYD3
RASEF
MRPL48
TOR1A
L3MBTL2
TSFM
DYRK1B
SNAP47
USP35
KCTD21
JMJD4
STMN3
RTEL1
DDX46
TIMM50
ZNF335
LRFN3
SDE2
BOLA2-SMG1P6
MAGOH
PKN2
SEL1L
SCAMP3
DUS3L
SERPINI1
PDCD10
USP42
CASC3
EIF2B5
TAS1R1
NOL9
RBSN
TMEM258
FEN1
MRPL55
RAD54L2
GPAA1
EXOSC4
CDK5RAP1
CCNC
GATAD2A
RPLP2
PIDD1
CLCN7
HNRNPL
INTS1
SLMAP
FAM133B
SURF6
TBC1D22A
HBS1L
MTR
CCNI
MRPL44
PPP6C
FAM89B
PSME3
CIAO3
FAM187A
ABT1
RPTOR
AARS2
TUBGCP3
MRPL4
IARS1
FBXW2
API5
DRG2
H4C12
SERP1
EIF2A
PDCD4
UFSP2
C4orf47
DYNC1I2
EFTUD2
CCDC103
ZNRD2
EIF1
TMEM186
PMM2
RAB5IF
C12orf73
TMEM160
REXO4
ADAMTS13
MXI1
TMEM43
CHCHD4
TFEB
EIF5
MON2
ZNF26
ZBTB7B
PPIL4
ZC3H11A
ZBED6
RANBP1
ECSIT
VIPAS39
AHSA1
APTX
DNM2
LTO1
NUS1
GARS1
ATG7
PCM1
C6orf47
ACAD9
VPS4B
TBCCD1
DNAJB11
C6orf89
EIF3C
TBCB
POLR2I
OVOL3
PSMD8
WDR43
VPS50
HEPACAM2
TVP23B
AJUBA
SH2B1
EIF3CL
SRP9
ZNF567
CBWD5
FBXO48
APLF
NOP53
FAM227B
DTWD1
ZNF554
DVL2
TUBGCP6
BDP1
RPGRIP1L
FTO
ZSWIM9
LIG1
EIF3D
NFYC
AKAP8
MIA3
ATP6V1G2
RAD52
RFX1
MRPL37
CYB5RL
STOML2
ARFGAP2
ZNF419
ATP6V0B
POR
CCND3
LY6G5B
RBM28