ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9730733 | THP-1
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◣ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

UBC
WDR74
PABPC4
H1-3
TRIT1
H4C3
H1-6
EXO5
YBX1
SRSF3
AIF1
PRRC2A
H3C13
H2BC18
ZFP69
SZT2
MED8
SIRT4
H4C6
CTPS1
SVBP
ERMAP
ZMPSTE24
H4C15
H4C14
RLF
NFYC
PARP2
H4C11
CCDC30
ZMYND12
PPCS
SLC3A2
PPIE
CITED4
C6orf226
H1-2
TMEM107
SRSF7
EIF4A1
ATP6V1G2
NFKBIL1
DDX39B
SMAP2
CDC20
HSP90AB1
H4C12
EEF1A1
H4C1
H3C1
H1-1
CIRBP
H2BC21
H2AC21
H2AC20
H4C4
H2BC6
ZNF684
H3C2
H2AC4
H4C2
COL9A2
RPS27
RAB13
RPLP0
ATF4
ZNF669
ZBTB4
SLC35G6
POLR2A
KLF7
INO80D
H2BC4
H2AC6
IBA57
SELENOT
P4HB
MRPS18B
AGPAT2
RPL10A
HEXIM2
NCL
TP53BP2
MLLT11
CDC42SE1
NASP
PEX6
PPP2R5D
RPS8
KCTD18
DESI2
H2BC12
H2AC12
GABPB2
MAT2A
MFSD2A
H2BC8
H2AC8
RPL5
SNX19
EIF1
MCL1
SRSF10
RPS6
H3C7
H2BC9
H4C7
H2BC5
H1-4
SRP9
FASN
SCMH1
HMGA1
RPL12
LRSAM1
NLRX1
ACTRT3
PPIA
H3C3
H2BC3
MARCHF7
MAD2L1BP
S100A13
CHTOP
ST3GAL3
ZNF124
AMD1
PABPC1
PCIF1
ID1
SRSF2
MFSD11
HNRNPAB
NDUFAF3
DALRD3
C2orf69
POLDIP3
HMGN2
P3H1
LEMD2
TUBB4B
RFX3
DDX5
H3C8
H2BC10
SMARCA4
PUF60
FOXJ3
HNRNPH1
ATAD2
RPL10
MIA3
ZC3H10
RPL41
GBA
ZC3H4
DNAJB4
KHDC4
HSD17B8
RING1
SFPQ
RPS3
RPL18A
PDCD6
FUS
OARD1
NFYA
RPS20
DCAF12
ZNF572
RSRP1
SRF
QSER1
ARF1
CYC1
ELOB
GPX1
C19orf48
RNPEP
H3-3B
UNK
TBCC
BICRAL
BZW1
RELT
SF1
ZNFX1
NOP58
H2AX
DDX19B
AARS1
RBM12B
EIF3L
ANKRD54
ZFAND3
TRAM2
ZNF691
E2F3
H1-10
NSD2
RBM14-RBM4
RBM14
SRSF6
EGR1
UHRF2
ZNF7
LOC730098
CCL27
SEPHS2
ZBED4
ZBTB37
SLC38A2
PYCR2
RBMX
GRIN2D
KDELR1
REEP4
KCNQ4
MOB1A
SEC16A
C9orf163
AHCTF1
EEF2
B3GALT4
VPS52
RPS18
TAF7
UBAP2L
C1orf43
NFKBIA
H3-2
MDM4
PNRC2
H2BC11
H2AC11
H4C9
ZNF672
DENND6B
RNF151
SLX1B
SLX1A
BOLA2B
BOLA2
NDUFB10
RPS2
SULT1A4
SULT1A3
RPL30
H3C11
H1-5
H4C13
XKR9
LACTB2
RPL13A
KIF5B
C6orf62
DENND4B
ELAC1
FARSA
CALR
ERLIN2
SMURF2
HYI
NSMAF
ELOVL1
ANKMY1
DUSP28
RPS10-NUDT3
RPS10
CEBPA
LAPTM5
RNF220
H4C8
RCC1
GTF2IRD2B
MTF2
CRK
RBM12
CPNE1
RNF224
CYSRT1
NAE1
RNF208
CPT2
PNP
TAF15
SLC39A7
RXRB
MRPL2
KLC4
ZC3H6
ZNF670
ZNF326
ACBD6
PKMYT1
TUBB
KATNBL1
MDC1
SLC16A3
CFD
PPP1CC
ZNF253
TOR4A
ZNF627
ZFP69B
APOM
BAG6
TSPAN10
NPLOC4
SLC25A44
GPANK1
CSNK2B
C6orf47
LY6G5B
GTF2IRD2
TMEM69
GPBP1L1
MATR3
MYH9
HNRNPA2B1
CBX3
C8G
FBXW5
RPS3A
HGH1
POLR2D
SREBF1
PBLD
HNRNPH3
H3-3A
TAOK1
CHAMP1
MAP10
RPL32
ZNF451
SUMO2
TUBA1B
RPL11
LAMTOR1
ZNF623
PSKH1
YWHAH
PPIH
LY6G6F-LY6G6D
LY6G6F
ABHD16A
TRA2B
PPP3CC
GADD45GIP1
HNRNPC
NIPAL2
RPL8
ZNF34
NARF
RDX
EIF4A2
RPL7A
MED22
TNRC6B
GET3
EIF3A
DDX50
CC2D1B
TSPOAP1
H3C15
H3C14
H2AC19
H2AC18
ZBTB22
TAPBP
HSPA9
TOMM6
CCDC137
BBC3
RPL3
CLTA
HYLS1
RPLP1
JTB
UBE2L3
VARS1
RPS19
METTL21A
TARDBP
LAT
TMEM79
SMG5
LIN9
CUL7
FOXP1
CCNL1
DPP8
HENMT1
SUMO3
CLK1
KRAS
ADPGK
PTMA
CDK12
PPT1
ZFP36
SMIM19
SLC20A2
PLEKHG2
SETX
MOB4
MRPS30
PXT1
KCTD20
KNTC1
SLC39A10
HNRNPUL1
DNPH1
JUNB
ZNF24
POLR2J3
EPN1
STXBP3
PAIP1
PSMD8
CANX
C1orf53
ACTR2
H2BU1
H2AW
TRIM27
PFN1
ENO3
RBM8A
MAN2C1
CNPY3
NCOA5
SNAP47
JMJD4
SDCBP
EXOSC3
TEX30
RPL23A
RAB34
COQ8A
SUPT20H
ZFR
SRSF5
DPYSL2
ZNF92
ZCCHC3
YWHAG
CAP1
PSMD14
MTO1
H3C12
H2BC17
H2AC17
SIGMAR1
PCBP2
NFX1
PDLIM2
TRERF1
NPM1
TIMP3
TBL2
BOLA2-SMG1P6
AZIN1
EIF5
GATAD1
SUB1
RBBP6
MRPS18A
ITCH
CARD8
VCP
EPC1
ZBTB44
SRSF1
USP40
TAP2
PSMB8
MDP1
CHMP4A
ID2
CERS2
LYPLA1
CMAS
INTS6
ZBTB45
RHBDD3
EWSR1
NACA
TRIM28
INTS2
ZC3H3
ARL6IP4
DEGS1
RAB7A
BMP8B
TKTL1
TEX28
DIDO1
ANP32E
TGFBRAP1
SLFN11
TNKS
ZNF594
MYL12A
NDUFV3
HPS6
TIA1
RPP25
USP42
TPM3
TESMIN
KCP
PRCC
SLC25A3
DPY19L4
ATP5F1A
SF3B4
GTF2A1
PPIF
CELF1
CGAS
SMDT1
PHETA2
EIF2S2
CDC37L1
MSRA
ABTB1
MUS81
CFL1
AFG3L2
NUDT3
LYPLAL1
BOD1L1
NNT
TREX1
PPP1R15B
SLC30A5
NDUFV2
TOR1AIP2
TOR1AIP1
HNRNPA3
ZNF700
STX10
IER2
ODF3L2
NUP133
OVCA2
PKNOX1
PIKFYVE
BCL7B
H2BS1
CYCS
LDHA
RAB4A
VDAC2
UHMK1
USP47
SPPL2A
DCAF8
SF3A1
CCDC157
RCE1
PRPF38B
HMGB2
SNRPD1
MAK16
SDE2
ZNF200
GRB2
KANSL1L
ECHDC2
H2AZ1
DNAJB14
GOLPH3
GRHPR
H3C10
H2BC13
H2AC13
COX18
LUC7L2
DNTTIP2
ZNF76
RPL26
NFU1
TXNIP
CHMP5
BAG1
MAPK1
RNPS1
NUCKS1
PRPF8
RPL24
TBRG4
THEM4
IMP3
FES
BRWD1
KRCC1
POMK
CTBP1
TRAF7
ATP6V1H
DNAH14
TUSC1
CLIC3
PAXX
PTBP1
DNAJB1
GTF3C6
H4C5
PFKL
EIF4G2
FMC1-LUC7L2
FMC1
PRRC2C
UBR2
RPL36
ETFRF1
CFAP94
FOXD1
CSNK1A1
ZNF93
RPLP2
PIDD1
ACSL3
RC3H1
OAZ1
MBD1
CSKMT
C11orf98
GPSM3
MTCH1
RBM4
RPS15
CEP192
ZNF696
TMEM70
ELOC
DDX59
UBAP2
RPL37A
SLC25A6
CAPRIN1
MYL6
HES6
TOMM20
UBE2V2
MAPK1IP1L
PPP6R3
GNAI3
SCCPDH
EIF3E
SUSD1
NCBP3
KMT5B
CHD1L
RPL36AL
MGAT2
PRKAB2
C16orf72
LRIF1
RPS16
VPS72
ZWILCH
RPL4
ZNF131
CNOT1
MRPL37
CYB5RL
RPL21
MKLN1
RCC2
VASP
RAB5IF
ATP5F1B
ETFA
DELE1
HNRNPDL
ENOPH1
CBFB
IPPK
CMPK1
NUDT18
ZNF574
RPS15A
RPL23
H2BC15
H2AC15
C5orf51
C6orf89
RBM25
GNAI2
PPIL1
HIF1A
CTNNB1
EIF2D
RPL22L1
TRIM33
RABL6
LRRC24
C8orf82
ZNF518A
GTF3C3
RAB22A
SLC38A10
C15orf39
IL4I1
NUP62
ATF5
SLC39A13
RC3H2
NAA60
PRRG4
C9orf64
NUP54
GDI2
FBXO4
HSPA4
NSD1
PMPCA
ENTR1
COPS6
ACTN1
AFF4
CBY3
ZNF207
SRCAP
LOC730183
DNAJC27
SUPT3H
RNF135
EEF1AKMT1
DOCK2
HSPA5
RPL13
TPT1
ARHGAP35
TONSL
CALM2
HDAC4
E4F1
RABEP2
VAPA
KDM3B
ATP6V0C
ANKRD13D
SRPRA
TNPO1
PRKCD
PSPC1
SS18L1
PSMA7
UHRF1BP1
GUK1
IPP
NRROS
ZSCAN31
UPF1
RPL37
GTPBP4
NUP42
VPS36
CKAP2
RRNAD1
ISG20L2
TMEM216
CFAP410
UBE2Z
SRD5A1
FOXK2
CCDC116
HNF4G
NELFCD
LZTR1
ZFAND5
TCTA
RHOA
H2AC16
OSBPL5
EZH2
HSPB1
TATDN2
SPI1
ZKSCAN2
DAZAP2
LUC7L3
EIF4H
SETD2
TMEM249
SLC52A2
FBXL6
ELANE
EIF3D
ATP5F1E
GMEB1
RANBP6
LSM4
TRIM11
ATP6V0B
DPH2
ASH2L
B4GALT2
RBMXL1
KYAT3
RPP25L
CYBA
KLF10
NCSTN
COPA
ZNF280D
GPX4
MRC2
RANGAP1
STARD7
SLTM
CXXC5
UQCC3
LBHD1
LIG3
ZC3H7B
SCYL1
CHD2
UBXN8
TAF1D
C11orf54
GART
KIAA1586
SMC5
TCF25
BMS1
ZC3H11A
ZBED6
YY1AP1
DAP3
RPSA
STMN1
CBX5
HNRNPA1
PARN
BFAR
RACK1
ARHGEF2
D2HGDH
UNKL
TPRN
TMEM203
NDOR1
MMAA
RPL14
STT3B
SCAF8
ACAP2
PIGL
NCOR1
ENOSF1
SH3GL1
CHAF1A
PSMB10
CTRL
PTBP3
NDUFB4
KPNA2
ETF1
ETNK1
NSUN4
PPA2
SELENOH
NKIRAS1
RPL15
TEFM
RPL17-C18orf32
RPL17
C18orf32
TOB2
TIGD5
EEF1D
PRPF3
DEF6
LMO4
SET
RPL29
RPL31
MCM3
ADAR
BNIP2
KAZALD1
GRK2
ATP5MC2
CSDE1
CA2
CREBZF
ANP32B
H2BC14
H2AC14
PRR12
HMGB1
TERF2
STAT1
UBE2J2
CAPZA2
WRAP53
TP53
PDF
INPP5D
RPL6
SLC1A5
ATXN2L
TMBIM4
RPL27A
HSPA8
WDR37
TUBA1C
POLG
LRPAP1
MTDH
SART1
MANBAL
PNN
TRAPPC6B
TCTE3
ERMARD
DCPS
RAD23B
PRDM10
PRR25
H2BC7
PAN3
H3C4
H2AC7
XPO7
CST3
PTPN7
IPO9
SPHK2
RPL18
FAM83E
C2CD5
THOC1
SUGP2
ARMC6
BTBD1
INPP5F
MRPL20
USF1
RRP1B
HSF2BP
COPS3
PUM2
ZNF236
SLC26A8
MAPK14
FOSL1
GMIP
GTF2I
ERAL1
VPS29
RAD9B
SNRNP35
CNN2
MROH1
BRPF3
SLC22A16
CEP20
UBE2G1
INPPL1
PIEZO1
PPP6R2
PIH1D1
ALDH16A1
RBM33
NUDC
FBXW4
MTMR10
USP54
ACTB
SRRT
MYH7B
GSS
CEBPG
COX7A2
MYBL2
PARK7
DDX19A
ZNF143
SSBP2
ZMYM4
NSD3
LETM2
PTER
C17orf58
ATXN7L2
TPD52L2
ABHD16B
CCSAP
C1QTNF6
ZNF302
RPAIN
NUP88
PAK2
TRAPPC4