ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5501657 | A-375
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◣ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

GSTA4
H4C15
H4C14
WDR74
TMEM107
COL23A1
GBA
NUF2
FRA10AC1
DSTYK
MTRNR2L1
PHC2
MTRNR2L8
SF3A3
MRPL21
IGHMBP2
INTS5
POLDIP3
CCDC200
STX16
RBBP5
PTPN6
C12orf57
H2BC21
H2AC21
H2AC20
SAR1B
S100A2
UCKL1
EIF2D
SNAP47
JMJD4
FAM227B
DTWD1
SSBP1
HMGB1
USPL1
INTS12
GSTCD
NR1H3
ACP2
SELENOH
H4C8
S100A16
TRIP4
ZBTB45
DRG2
NDUFC2-KCTD14
NDUFC2
TATDN3
NSL1
SMG8
CCNL1
RPS7
H3C13
H2BC18
RPL37
NPAS4
SIRT4
TBC1D19
ZNFX1
NDUFS3
KBTBD4
PSMF1
CCDC107
RAD54L2
H4C11
EIF1AD
BANF1
DCP1A
NMNAT1
LZIC
LMNA
MTRNR2L2
MSH3
DHFR
H3C15
H3C14
H2AC19
H2AC18
CCDC88A
METTL9
YARS1
S100PBP
STAT3
DPY19L4
H1-3
SLC44A1
NOC4L
DDX51
GARS1
POLR3E
MRPS23
H2BC5
H1-4
C17orf75
LAMP1
SEC13
NME1-NME2
NME1
MRPS18C
HELQ
ERCC6L2
SCNM1
LYSMD1
RUVBL1
LRRC37A3
DMAP1
COL16A1
PCID2
CUL4A
UQCC1
ADPRHL1
ETV4
RPS6
STOML2
H1-2
PRRG2
NOSIP
SRSF4
MGAT5B
JRK
DDIT4
GTF2H2C_2
GTF2H2C
TUBGCP3
H4C12
MRPL40
HIRA
MTF2
H3C3
H2BC3
LRRC59
AAR2
KLHL20
PPIP5K2
GIN1
NUP54
TAF1D
C11orf54
AURKAIP1
TVP23B
ARTN
CALHM2
MAT2A
CDKN2AIPNL
KMT2C
MPHOSPH10
MCEE
RGPD1
RGPD2
ARL8B
TSC2
NTHL1
PSMD9
HPD
STX18
CLUH
TEX9
RFX7
NFE2L2
KNL1
VPS28
RASA3
POLG
KMT2E
TTC4
RPLP1
FAM187A
H2BC11
H2AC11
STAG1
WDR24
C12orf65
MRPL1
ELAVL3
PSMD6
TTLL11
JUNB
SMARCD2
TSFM
RARA
DNAJC25-GNG10
DNAJC25
SCAND1
ZNF296
GEMIN7
ATP5MC2
BNIP1
ZC3H10
RPL41
SYT7
SRSF7
RANBP2
DUS1L
REXO4
ADAMTS13
DDX1
GTF2H2
SNRPE
MLEC
F2RL1
ST3GAL2
GINS3
LAMTOR5
RPS20
NUP153
COMMD2
NSUN4
C8orf37
TEKT2
ADPRS
MRPL34
FAM98B
DDA1
ABHD8
PAFAH2
CCAR2
C8orf58
AQR
SDHAF3
TBL3
MCOLN1
LSM12
G6PC3
BANP
COMMD1
CCT4
NR1H2
SLC33A1
DDX19A
MRPS14
ISLR
ADNP
DCAF10
PYROXD2
MRPS35
WBP1
INO80B
RPS19
ALG10B
TMED2
TEX46
KDM1A
PHF12
ESCO1
VIM
GTF3C3
NSA2
GFM2
DHRS3
TEFM
RPL27
MAPK1IP1L
BAX
FAM133B
MAZ
SPRYD4
ZNF749
TRMT61B
RPS3A
PMPCA
ENTR1
TRPM7
TIMM22
SNRNP70
CLCN7
C12orf73
MRPS31
LDAH
SNRPB
CBX5
HNRNPA1
KCNMA1
SFPQ
WDR36
ABCC3
TMEM222
UCHL5
RO60
BRF2
RAB5IF
MED4
AP3S2
NFX1
PSMC2
DNAJC2
H4C3
H1-6
MRPL55
CIAO3
RCAN1
USP30
RPL12
LRSAM1
ZNF398
MTIF2
ZNF425
MORF4L1
EFCAB2
ADAR
PHLDA1
NCOA7
ITPKC
COQ8B
VIRMA
ILF3
ERCC1
UTP3
ACYP2
H4C9
OMA1
DAB1
RPL29
TOR1A
MED18
FKBP2
LOC114841035
FZD1
PPP1R14B
MRPL58
EMC3
PPRC1
TOB2
MRPL20
ID1
PURB
VPS36
CKAP2
ILF2
FURIN
AARS2
GPRC5A
HEXIM2
FAM207A
BMS1
H3C2
H2AC4
H4C2
CZIB
H4C1
H3C1
H1-1
RIN1
NOTCH2NLC
C8orf33
CDK5RAP1
COX16
RNF207
ATXN2L
POLR2J
NOL11
MRPS2
C9orf116
FAM228B
TACO1
SF3B6
TMEM101
INO80C
ZER1
GTF2B
TTI2
OTUD7B
RPL26L1
PPP4R2
PLEKHB1
CAPS
ZC3H6
YIPF2
TIMM29
PRPF4
CDC26
VPS72
MBTPS2
BCL3
CCDC59
UBA52
EFTUD2
CCDC103
C19orf67
ZNF3
ZC3HC1
CCDC15
MAP2K3
H4C6
S1PR2
KCTD5
DPP8
UBL7
PNPT1
RRP15
EIF3G
TMEM39B
RPS15A
TBC1D13
CCNT1
HIPK1
ATAD2B
CTNNB1
DCAF8
PHB2
RPTOR
HROB
WDR97
MAF1
PANK4
HES5
IDH3B
SLX1B
SLX1A
BOLA2B
BOLA2
NFKB2
LIG4
ABHD13
GPN1
CCDC121
SNRPD1
MRPL27
EME1
CSKMT
C11orf98
NANOS3
FAF2
UBA2
PRMT5
MBNL2
DUS2
DDX28
PRDX1
WDTC1
TOR2A
EMC4
RASA1
MYL5
ATP5ME
CRB1
EIF2B5
ARID3B
SEC22B
RPGR
NFYC
PARP2
ARL6IP1
TMA16
SLC39A4
CPSF1
ALDOA
TMEM238
RPL28
MLLT11
CDC42SE1
YWHAE
TMEM250
TBL1X
ATP5MF-PTCD1
ATP5MF
COMMD9
TRAF7
MAN2C1
ZMPSTE24
WDR70
H2BC4
H2AC6
SMG7
TBPL1
MACC1
H3C10
PLIN3
HSPA6
H2BC14
H2AC14
OAZ3
MRPL9
C19orf53
TAS1R1
NOL9
EIF2B3
ADAM22
SOS1
FCHSD2
CLUAP1
C16orf90
RPS27
RAB13
ITGB3BP
EFCAB7
TPD52L2
ABHD16B
RRP9
PARP3
OPA1
BTRC
HEXA
DPP9
SNRPB2
LRWD1
ALKBH4
H3C12
H2BC17
H2AC17
H3-2
S100A10
MRPL3
MTR
CIAO2B
CES2
RPS24
POLR3A
BIRC2
DRAP1
C11orf68
SHMT1
DGKD
RNASEH2C
RAD52
SRCAP
LOC730183
RPL5
CD2BP2
SF3B4
TRIB1
SAAL1
ARID1A
TCF12
RFXANK
BORCS8
TMEM230
MIA3
TSNAX
YTHDF2
MYH7B
GSS
BCAT2
ACBD3
INPP4B
FRMD4A
SH3TC2
OSCAR
NDUFA3
RPS16
EPRS1
ZBTB40
HSD17B12
H4C5
CALR3
C19orf44
TAF5
PARK7
PCIF1
IQCH
AAGAB
RBM45
PDE11A
ZNF106
SNAP23
ATF6
IQSEC3
FXYD3
POLR2J3
SART1
DNAJB1
R3HDM2
INHBC
RPL26
C5orf15
NACA
SLC20A1
NAA20
DCLRE1B
AP4B1
MBLAC1
HEATR1
TGFA
CPT2
HPCAL1
RPS3
TMEM79
SMG5
BOD1L1
CNPY2
USE1
ZNF286A
TMEM259
FAM3C
OCIAD1
PDS5A
CNN2
CDC25C
FAM53C
GALK2
PUM3
COPS2
POLR3B
NDUFAF5
ESF1
SYCE2
PPP6R1
IFRD2
SNX17
EIF2B4
RPL22
NUP107
MTOR
PRKAR1B
CDK12
ETV3
FAM200B
NBPF15
H2AX
RBSN
GOLGA1
PBRM1
GNL3
BUD13
THEM4
QTRT1
CEP135
SRA1
YTHDF1
H2BC15
H2AC15
PYGB
GPR180
SEMA3B
NDUFS7
MRPL24
NBPF1
STYXL1
CAAP1
ASB6
ZCWPW2
AZI2
LCMT2
ADAL
BLOC1S6
SRFBP1
POLM
PARD6A
ACD
RBM28
NUCKS1
INPP5F
WWTR1
LY6E
PCM1
INTS4
NDUFA12
ZSCAN30
TSSK6
NDUFA13
ZNF696
H4C4
ADGRG1
PCARE
DOHH
SNX19
ARHGAP19
NUP133
CUTC
COX15
NCOA5
PSMA1
ACBD5
SQSTM1
PSCA
UBE2D3
AP1G1
DIAPH1
LARS2
SACM1L
DHX8
SNF8
E4F1
SECISBP2L
BIN3
RABGAP1L
CISD2
FOSL1
FCRLA
SMN2
SMN1
FARSA
CALR
CCDC124
WDR11
HAUS5
ENO1
ULK4
UTP25
IRF2BP2
H2BC13
H2AC13
TRIAP1
SLC3A2
SPHK2
RPL18
FAM83E
MAGOH
USF1
AVPI1
TPK1
KRR1
H3C8
H2BC10
ARHGEF12
GTF3C5
CWC25
TTC17
CDC73
IMPDH2
TAF12
TBC1D23
RNF166
MITD1
TAMM41
CTU2
YAE1
PKMYT1
PEMT
ZNF721
PIGG
PHAX
RPL6
POLR2C
FBXO31
PTPN11
COMMD4
C1orf74
MAPK8IP3
IREB2
AMACR
ETS1
SSH1
ALDH1A3
ZCCHC4
SLC30A6
GTF2H3
EIF2B1
TBRG4
SRSF2
MFSD11
COPS7A
POR
GGCX
BORCS7
SLC39A3
SEC11A
MSL2
ZNF668
ZNF646
SLTM
COA7
PDS5B
LGALS1
PSMD3
TOR1AIP2
TOR1AIP1
HSPA9
VAMP1
AGAP3
PEX12
EXOSC6
NUP42
TTC1
STX4
INKA2
DDX20
DHRS13
INAVA
SSNA1
ANAPC2
TSN
NSFL1C
PTBP1
POLR2M
NOC3L
MUL1
DDX59
HSPA8
DIDO1
GID8
TMEM208
LRRC29
ING4
RMND1
ARMT1
STMP1
B3GAT3
RSRP1
H3-3B
NOTCH2NLA
NOL7
KLHL12
C8orf76
RARS1
ZCWPW1
MEPCE
ORC5
SLC35E2B
VAMP4
ZDHHC7
MTAP
IGFBP6
SOAT2
SPNS1
LRCH4
FBXO24
RDH5
EDC4
M6PR
KLRG1
CHD1L
RPL23
MZF1
PRDM10
RBM12
CPNE1
RPL24
DCBLD2
ATN1
EML2
PRCC
DNAJC11
ABRAXAS2
MRPL44
SLC25A51
RMDN2
SIK2
AMOTL1
KIF21B
OR2L13
OR2AJ1
SRPRA
FBXW2
RPS13
HEXIM1
RPL35
ARPC5L
MRPL38
TTC14
RINT1
SETDB1
METTL2A
METRNL
RAD23A
LTA4H
GPX1
SLC26A2
ACTN1
COX20
NWD1
RPS28
NDUFA7
FUS
ODF3L2
SLC24A1
INTS14
SH2B1
PPP1R8
AP5S1
IPO4
SAP30
SEC14L1
THOC5
NDUFA9
AKAP3
TBRG1
TTPAL
ZNF256
MRM3
GLOD4
PINX1
UBE2Q1
MRPL48
DDX46
MANBAL
TAGLN2
NCBP3
LTBR
GPN2
C2CD5
NSMCE1
BCL9
KBTBD6
TIGD6
HMGXB3
ERLIN2
FRG1
DENR
MRPL33
LONP2
ABCC11
SLC35A4
APBB3
GATAD1
ZC3H4
RGS3
TIMM50
RPSA
FBXL18
RPL17-C18orf32
RPL17
TAF1B
RPL7A
MED22
YKT6
MTCH2
ISG20
MEOX2
MRPS15
EEF1A1
PNPLA6
STAT1
HDAC4
TPT1
RANBP6
ZBTB37
H2BC7
H3C4
H2AC7
COIL
UTP14A
EPHA3
SPATA25
NEURL2
CTSA
KHDC4
SNAPC5
RAD50
GTPBP6
MFAP3
FAM114A2
ZZEF1
CYB5D2
GABPB2
PSMB7
UTP23
EDEM2
WWP2
MICOS13
HSD11B1L
EIF4A3
ZNF76
UQCRQ
GDF9
MYDGF
PPIL3
NIF3L1
LEO1
SMARCA4
ZBTB38
HACL1
BTD
B9D1
MYEOV
EPOP
TRAPPC3
TUBA1B
GOSR1
SRRM2
GAPDH
ZNF484
EGR1
USP19
NECAP1
WDR55
TSKS
AP2A1
SYTL2
AXDND1
SPAAR
HRCT1
ZSCAN22
C16orf91
SLMAP
MVB12A
MKRN2OS
MKRN2
KIF11
RFC2
PKIG
TOMM40
ARL14EP
MAGOHB
U2SURP
SLC35A3
MRFAP1
CLNS1A
TMBIM6
ANKRD18B
ROBO3
HNRNPH2
ALX1
DNM2
SLC35B1
ALG10
RAD9A
BTG1
GPATCH4