ChIP-Atlas: Target genes

Potential target genes for HDAC3

Query protein: HDAC3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10045306 | LNCAP
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
HDAC3's Target genes

◢ HDAC3: Average

◢ SRX5930120: Acute myeloid leukemia

◢ SRX5930121: Acute myeloid leukemia

◢ SRX017705: CD4+ T cells

◢ SRX5457145: K-562

◢ SRX5457146: K-562

◢ SRX8976672: KYSE-410

◢ SRX8976673: KYSE-410

◢ SRX8976674: KYSE-410

◢ SRX8976675: KYSE-410

◢ SRX8976676: KYSE-410

◢ SRX8976677: KYSE-410

◢ SRX8976678: KYSE-410

◢ SRX8976680: KYSE-410

◣ SRX10045306: LNCAP

◢ SRX10045307: LNCAP

◢ SRX3401278: MCF-7

◢ SRX3401281: MCF-7

◢ SRX2140209: MM.1S

◢ SRX5930140: RH-4

◢ SRX5930141: RH-4

◢ SRX059713: VCaP

◢ SRX059714: VCaP

◢ HDAC3: STRING

GET4
CDK4
UBE2Q1
HEXA
AP5Z1
KAT5
CUTA
WASHC2A
ILF3
RPUSD4
FAM118B
ATP6V0D1
LAMP1
UVRAG
OSGEP
APEX1
WASHC2C
MTHFR
CLCN6
DVL2
MCOLN1
MFSD1
SLC35A5
ATG3
WDR62
THAP8
RAD9A
ATP6V1G1
TMEM116
ERP29
PIP4P1
HAGH
FAHD1
HPS5
GTF2H1
CLCN7
COMMD9
GBA
HOOK2
TPP1
UBE2B
CDKL3
AFF4
SPNS1
TBC1D30
GNS
SPPL3
THRAP3
BHLHB9
TRAPPC2L
GALNS
RNASEK
SGTA
CLN3
FAM174C
NEURL2
CTSA
DHX35
COMMD8
AMDHD2
HOXC13
SGO1
SLC33A1
ATP6V1C1
TRMO
UBAP2L
C1orf43
LAMTOR1
HNRNPH2
GLA
SERF2
ATP6V0B
KDM4C
CEP162
GTF2A1
VPS33A
KLHL12
RRAGB
STX4
BAX
CREBRF
NPTN
DUS3L
SPG21
SHPK
CTNS
ADNP2
RRAGC
RMND1
ARMT1
PLD3
C19orf47
SLC38A7
FNIP1
UBN1
GLYR1
IQCG
LMLN
PRDX6
VPS11
ZNF292
NAPA
CTDP1
SUPV3L1
SPATC1L
PRPSAP2
SUMF1
TOP3A
SMCR8
BLOC1S1
TBRG4
ATP6V1E1
C5orf51
NAGPA
TMEM248
ATP6V1H
RPL5
SLC35B2
HNRNPA2B1
CBX3
YJU2
G6PC3
ZNF507
WBP2
TIMM22
TOGARAM1
KLHL28
DNAJC13
TSSC4
NUF2
MORC2
UBAP2
DNPEP
RAP2A
METTL25
CCDC59
NOL8
CENPP
MYDGF
ATXN3
CCDC174
POLR3B
PIK3R3
MARCHF8
ARFGEF2
PRMT3
NME1
COMMD4
NUP214
DPP9
ATP5MC2
POLG
EIF2S1
ATP6V1D
GNB2
WASHC5
NSMCE2
CACYBP
NR1D1
EFTUD2
CCDC103
VCPIP1
C8orf44-SGK3
KHDRBS1
NDUFS7
STX6
ADCK1
ATP6V0E1
WDR74
TMEM258
FEN1
PSMC4
USPL1
HMGB1
ANKRD12
SCAMP3
HSPBAP1
MMACHC
TBL3
SF3A3
SLC35A4
APBB3
CPEB4
EMC2
UTP11
EEF1A1
UROS
BCCIP
NEU1
TOR1AIP1
PBRM1
GNL3
PDE12
MYL12A
TMEM259
ARRDC4
FEM1A
ATG4C
GABARAP
FRMPD1
CYCS
SLC36A1
THNSL1
SOD2
WTAP
RPS27
S100A13
CHTOP
MRPL24
MSL2
ZSCAN22
PTBP1
NUDCD3
SCYL3
MRPL27
EME1
MRPL48
QTRT1
LEMD3
UBE2J2
CACUL1
CDIP1
KANSL2
LAMTOR5
SHC1
CKS1B
MIS18BP1
RPL27
TOM1
MED11
ZNF56
ANKHD1-EIF4EBP3
ANKHD1
RFESD
TIPARP
CCNL1
VPS26A
CCNT1
LRRC56
CCNYL1
RBBP5
H4C14
SLX1B
SLX1A
BOLA2B
BOLA2
BOLA2-SMG1P6
CRNKL1
CFAP61
CEP350
CHMP7
NUFIP2
ZZZ3
TMEM39A
SNRPE
SARS2
MRPS12
TSNAX
CREBL2
ZNF33B
LONP1
CATSPERD
SNRPA
C19orf54
MRPL3
MRPS23
BORCS7
MRPL55
MSMP
PARL
SF3B5
RC3H2
ZNF687
DUS2
DDX28
CKS2
TRAPPC8
CASC3
MTF2
STAT3
THAP5
DNAJB9
PAXBP1
ITGB3BP
EFCAB7
TIMM17A
CHD3
GABPB2
DUSP12
JMJD1C
SRSF3
THOC3
DFFA
ATAD2
ZMPSTE24
DNAJA3
MVK
RABL3
PIK3C2A
GTF2E1
GTF2H2
CAND1
B3GALNT2
ACAD9
CFAP251
CXXC1
TCP11L1
RBM6
BUB3
PDE4DIP
CSTF2T
N6AMT1
MTIF3
RPS26
FDXACB1
C11orf1
SIKE1
GTF3C4
DDX31
RNF43
RNMT
FAM210A
C12orf66
LSR
GLMP
BCLAF1
ZNF672
FITM2
GTF2IRD2
HACD2
C8orf37
GTF2IRD2B
IFT43
SLC25A32
DCAF13
GID4
ATPAF2
CDK7
CSNK1G3
HPS1
SRSF1
PDAP1
BUD31
PRPF6
INTS7
DTL
TNPO2
CTSL
GFM1
TM9SF4
DHDDS
MLEC
GOLM2
BUB1B
SELENOH
AURKAIP1
CCDC124
ZBTB40
DNAJC25-GNG10
DNAJC25
PPRC1
BMS1
GDAP1
LTA4H
SLC25A53
CACTIN
BCL9
GORAB
TDG
ZFYVE26
RPS29
HDGFL2
EPRS1
SKAP2
EXO1
DCAF8
IFT57
U2SURP
CSTF1
AURKA
MTFR2
GABPA
ATP5PF
TARS2
DOHH
CEP63
ANAPC13
WDR13
RNF224
TMBIM6
ATG5
NSG2
NUP153
VPS50
HEPACAM2
HSPA5
ASH1L
C11orf65
UTP23
MRPS21
SEC11A
KIF15
KIAA1143
ZNF850
CLSTN1
RCHY1
GSTA4
NAT10
BCAR3
ZNF565
ZNF146
RORC
USP30
RPLP2
FNTB
CD164
COX14
ERRFI1
SGF29
DNM2
EIF1AD
BANF1
NCL
HNRNPC
CZIB
PSMC5
FTSJ3
RPL38
DRG1
ASNS
ZNF408
ARHGAP1
NUP107
SRCAP
LOC730183
PIGO
RPL22L1
PPP4R3A
NPM1
BANP
KEAP1
ARMC5
PPP1R10
MRPS18B
ZNF77
TMEM170A
DOP1B
COPS7A
C5orf49
PLEC
GRN
H4C15
OXSR1
SLC3A2
TRUB2
COQ4
HDAC6
AHCYL1
ZFYVE19
DNAJC17
HDAC2
ITGB1
NOL7
L3HYPDH
JKAMP
IP6K1
POLR2J3
WWOX
DYRK1B
PCNX4
ZSCAN32
ZNF174
ORC2
CFAP43
AKAP9
ADAT1
TFPT
PRPF31
WDR55
TTC14
GPHN
BOLA1
SYS1
SF3A2
PLEKHJ1
ZNF714
ZNF682
TBC1D32
AAAS
LUC7L2
FMC1-LUC7L2
FMC1
TAMM41
DNMT1
RAB18
DAZAP2
PRC1
DENND4A
STX16
LPCAT3
HSPA9
RPS11
CHD1
WDR89
CUL5
RIOK3
EXOSC3
IQCH
AAGAB
IPO13
NTMT1
MZF1
TM2D1
HOXB7
TRIP4
RPS14
RPL37
THG1L
DCP1A
PRRG2
NOSIP
PRKCSH
CCDC151
WDR4
KTI12
GOLGB1
TOM1L2
DRC3
PRKCI
SLC25A26
USP54
KHSRP
TOMM20
UBE4A
SMARCAL1
CIART
CCT2
RTTN
GINS3
FDPS
TTBK2
SMIM15
OSBPL8
LZTR1
RRP15
PDCD11
ATP5MD
ASCL5
UTP3
GTPBP4
SETD3
CCNK
SIRT4
FUS
TAF13
RETREG2
CNPPD1
EIF4G2
BAG6
APOM
SCAF11
KMT5C
TAF12
C10orf88
POC1B-GALNT4
POC1B
PSMD9
HPD
ARF4
MFSD4B
TBC1D22A
PSME3
USP28
CBWD5
GUK1
ESCO1
PPT1
WDR5B
NPRL2
CYB561D2
ZSCAN25
ELP3
IPO11
KIFC1
PDCD6
PCNX3
ESD
RBM48
PEX1
ZAR1L
BRCA2
IFRD1
PRCC
TOMM70
LNP1
RSRC1
PPP2R1A
TPM3
TMEM80
PDGFB
DEAF1
C19orf48
STT3B
PARP2
SMIM10L1
PRH1-TAS2R14
PRH1
EIF1
ZNF219
IGIP
C17orf97
JUP
TMF1
CDCA3
AK2
ANAPC10
ABCE1
SEC23B
GLRX5
CDK20
SLC35B1
ZNF165
RAD51AP1
C12orf4
SSBP1
ZNF497
UMAD1
DSTYK
H2AZ2
RPS13
RB1CC1
SLC25A46
RPS3
NEDD4L
FTSJ1
BLOC1S6
CWC25
RNPS1
MRPS31
TAF9
RAD17
AK6
SMIM20
SEPTIN2
HDLBP
L2HGDH
DMAC2L
MRPL21
IGHMBP2
MRPS33
RPL35A
VMAC
NDUFA11
CFAP20
IFT172
UBFD1
EARS2
NUDT15
RBMXL1
KYAT3
INTS9
HMBOX1
DDX21
ZBTB3
NUTM1
NOP10
CLN6
PNPLA6
TCAIM
SLC39A10
MCCC1
RRN3
FAM227B
DTWD1
SP2
AATF
SKA3
MRPL57
ZNF529
NFYC
POT1
ZSWIM3
ACOT8
HTR5A
ZNF622
TTC17
ABT1
SRSF11
COPS4
CSDE1
PSMD6
TADA1
ACBD6
TRAF6
RAG1
SLC30A5
NAA25
NCBP2AS2
NCBP2
PRORP
PPP2R3C
FAM53C
CDC25C
NFX1
FBXL19
COA6
PCCB
FZR1
PMVK
WDR36
STK19
DXO
POLR1B
HMGCR
ARL4A
ANKRD46
POLR3G
MBLAC2
CCDC30
OPA1
GNL2
QTRT2
CCDC191
PRPF38B
RALBP1
SACM1L
CTH
SLC25A13
PSMD3
ALG1
VCP
TRAPPC12
RBM4
EIF4A1
ZBTB45
GOSR2
RAB5A
EFHB
CIPC
TMEM87A
GANC
OGA
SNX17
EIF2B4
PDCD6IP
ZNF561
ICE2
SRSF7
DDX19A
RAB30
SRPRB
MBD4
IFT122
SMN2
SMN1
TNPO3
TMEM167B
ATF7-NPFF
ATF7
SLC39A6
ELP2
ZNF791
ZNF490
MRRF
KRTAP12-2
DCTN4
ARIH1
MED28
GTPBP10
TCTN3
THOC1
MAP2K7
YDJC
MRPS18C
HELQ
ACSL1
TRA2B
DELE1
RASSF1
PNP
GTF2H4
ALG14
TBC1D17
AKT1S1
RGS3
CCDC146
CCDC107
LRIG2
CLTC
SHF
TTC23L
TMEM230
MFAP1
GOPC
FAM214A
EIF2B3
STXBP4
COX11
RPS5
ZNF829
ZNF568
CBWD3
DNAJC19
ABCF1
NACA
DDX11
ADK
RPLP0
ARL6
MYG1
CALR3
C19orf44
ZNF335
NDUFA4
SURF6
RCCD1
RPS6
RSU1
LRP2BP
ANKRD37
SMIM4
HSPA13
PTRHD1
CENPO
THAP7
COX16
TBC1D19
USP1
HAUS5
CNOT1
LANCL2
INKA2
DDX20
PPOX
RFC4
DDX18
BCAS3
EIF3D
ABCA3
UFSP2
RMI1
HNRNPK
FAM71E1
EMC10
OSBP
SFPQ
TTC4
KBTBD6
TRAPPC3
SEC11C
PPP3CA
MPDU1
LOC100996842
ZNF383
VAC14
ECH1
RTEL1
DNTTIP2
TSACC
CCT3
SCNM1
LYSMD1
GSPT1
TSNAXIP1
TMEM144
RANBP10
NUDCD2
HMMR
AGFG2
NOP16
HIGD2A
SRSF6
PHF12
RBL1
NADK
ERAL1
LRRC29
PES1
KLHL32
DGLUCY
MRPS35
ISG20
RAB5B
MMADHC
TUT1
RPS6KA5
RAMAC
MNT
SLC12A9
LRR1
TRMT5
SLC38A6
STOML2
PACC1
SWSAP1
ARG2
RPGRIP1L
FTO
QRICH1
KLHL18
KIF9
WARS2
PGK1
ORC4
MBD5
TRMT112
PRDX5
ATP5MPL
SBDS
NFATC2IP
ZNF300
WDHD1
SOCS4
ENSA
SUPT7L
SLC4A1AP
UBXN4
CHCHD2
TRAPPC4
RPS25
TATDN3
NSL1
NRL
DCAF11
NUP42
DMTF1
TGOLN2
VIPAS39
AHSA1
RNF121
LOC100133315
LAPTM4A
TP53BP1
TMEM183A
DPAGT1
ACTR1A
TERF2IP
MLF2
KARS1
ARID4A
SEPTIN7
NDUFA2
IK
METTL1
EEF1AKMT3
HERC5
TRMT61B
RPS15
AHCTF1
DNAJC28
PTPN4
PISD
EIF3B
TOR3A
NECAP1
ALKBH3
RBM14-RBM4
RBM14
EMC4
RPS20
COPB2
C6orf89
TBC1D23
KIF22
ZNF286A
STXBP3
STAT2
ZNF585A
LYSMD3
KIF20A
BRD8
TMEM59
TCEANC2
NOTCH2NLC
DIABLO
NOTCH2NLB
NOTCH2NLA
SEC61B
GALK2
COPS2
DMXL1
FBXL12
WDR48
SCN11A
WDR6
NPAT
ATM
NLGN1
AIP
RECQL
GOLT1B
SFSWAP
BNIP1
VEZT
FGD6
DCAF10
SRRT
PRPSAP1
ZBTB6
CCDC90B