ChIP-Atlas: Target genes

Potential target genes for HDAC3

Query protein: HDAC3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5930140 | RH-4
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
HDAC3's Target genes

◢ HDAC3: Average

◢ SRX5930120: Acute myeloid leukemia

◢ SRX5930121: Acute myeloid leukemia

◢ SRX017705: CD4+ T cells

◢ SRX5457145: K-562

◢ SRX5457146: K-562

◢ SRX8976672: KYSE-410

◢ SRX8976673: KYSE-410

◢ SRX8976674: KYSE-410

◢ SRX8976675: KYSE-410

◢ SRX8976676: KYSE-410

◢ SRX8976677: KYSE-410

◢ SRX8976678: KYSE-410

◢ SRX8976680: KYSE-410

◢ SRX10045306: LNCAP

◢ SRX10045307: LNCAP

◢ SRX3401278: MCF-7

◢ SRX3401281: MCF-7

◢ SRX2140209: MM.1S

◣ SRX5930140: RH-4

◢ SRX5930141: RH-4

◢ SRX059713: VCaP

◢ SRX059714: VCaP

◢ HDAC3: STRING

MTRNR2L2
HEXA
MTRNR2L8
LAMP1
WASHC2A
WASHC2C
AP5Z1
CCDC200
NEURL2
CTSA
TNC
MSS51
CLCN7
ARID5B
WBP1L
ZNF668
C1QTNF1
AFAP1
GPSM1
KCNMA1
SUMF1
ZAR1L
BRCA2
STRA6
KAT5
TRMO
C20orf141
PVALEF
AATK
OR51T1
COMMD9
CLN3
SLC35A5
ATG3
ATP6V0D1
GFRA1
LTBP1
SULF1
FCRLA
FREM1
SNX16
GBA
GET4
MYPN
TNNT1
WDR74
CLIP1
SMYD1
DOK7
FHL2
MYOG
MUSTN1
HDAC9
TBL1X
HAGH
FAHD1
FLCN
B3GALT5
ARL14EP
ZNF507
MYBPC2
HRCT1
AMDHD2
SH2D7
PTPRD
PAFAH2
MTRNR2L9
NAGPA
TCF4
BLOC1S1
MFSD1
RRAGC
SBK2
MAP3K7CL
VPS33A
PDE4DIP
KDSR
TBC1D9
SMARCD2
MYLK4
SPNS1
RPS7
NDUFA4
HNRNPH2
GLA
ITGB3BP
EFCAB7
RASGRP3
BAX
CREB5
RYR1
ANKRD13A
UBE2Q1
SYNPO2L
ANKRD1
RMND1
ARMT1
TMEM167B
FAM200B
BLCAP
CCN2
ALK
HES1
UCHL5
RO60
AMPD3
INTS10
NAV2
SSBP1
KDM3A
FLRT3
CDK4
PPP6R1
EYA1
SLC44A1
OPRD1
MYL12A
ACOT9
SLC25A34
KANSL3
S100A2
MXRA7
SPATC1L
PTK6
NAPA
TNNT2
ZBTB18
SREBF1
RBPJ
VTA1
NMBR
NPEPL1
MAST4
CNN3
MINDY2
G2E3
SEMA3D
MAPK10
YARS1
S100PBP
ACVR1
INTS12
GSTCD
MCOLN1
RGS12
SYTL2
LRRC17
USPL1
HMGB1
ZCCHC24
STYXL2
ZNF335
SSTR5
ABLIM1
NUDCD3
KDM1A
CCNG2
CGGBP1
C3orf38
G6PC3
TLN2
BTG2
SYTL3
MYO18A
KLHL12
ABHD2
SNRPB2
IFNAR2
PPP1R3D
FAM217B
SERP1
EIF2A
ATP6V1C1
MED18
PBK
UTP3
MAMSTR
ERI1
SUPT7L
SLC4A1AP
CBWD5
CBWD3
SEM1
ODF2L
RPA3
HOXC13
BCAT1
TDRP
TNPO3
SLC25A26
TACR3
TNNC2
CASD1
ST7
KANSL1
MTHFD2L
CEP162
WRN
PURG
MTBP
MRPL13
MDM2
RAD9A
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
COMMD4
TBC1D19
VAMP5
NCAM1
TRIM62
CCNI
ASB18
COX7A2
PROSER1
NHLRC3
DZIP3
CIP2A
RAP1B
SSBP2
ANKRD12
TMBIM4
RRAS
RPUSD4
FAM118B
VPS11
THAP1
NOXO1
CDC42EP3
SLC4A2
PIP4P1
RRP15
PPIP5K2
MARCHF8
CDK5
SLF2
TANK
RBM48
PEX1
CHMP2B
TPP1
CRYAB
DVL2
E2F6
FIP1L1
CAND1
UVRAG
CCDC174
PCBP2
FITM1
RRN3
PLEKHS1
ATP6V1H
MNAT1
SMAD3
SPATA9
RHOBTB3
MAP3K7
MTF2
AZIN1
TSPAN31
GRN
UBB
DARS1
NUP42
MUSK
PSMA5
SH2B1
PIH1D2
NKAPD1
THAP10
LRRC49
LRRC58
RXRG
WBP11
C12orf60
STAT1
SF3A3
AFF1
ZNF32
RPL22L1
FANCC
CACYBP
GTF2B
WDR11
THUMPD3
NFIA
LFNG
PEX3
ADAT2
NAGLU
DENND2A
INPP4B
POLR2M
SH2D3C
TUBA1B
RTKN
ATP6V1G1
MSL2
CCDC146
PPP4R3B
N4BP2L2
TTC30A
EXOSC8
DNTTIP2
KCNF1
INMT
DBF4B
MTMR9
LOC100421372
HSPA14
CDNF
WASHC5
NSMCE2
PNPT1
CHRNG
KRTAP5-3
RBMS3
OSGEP
APEX1
ARMC8
HNRNPD
CCDC15
PLEKHD1
TSR3
GNPTG
EPS8
TBC1D30
GNS
JMJD1C
PPM1D
MRPL44
VGLL3
ZNF143
RBBP5
POMZP3
SLC35E2A
NUP205
ZNF519
VPS50
HEPACAM2
COX16
ANKRD40
NKAP
THADA
SELENOT
KLHL41
STK36
RNF25
SH3BP4
RGMB
SGIP1
STXBP5
PFDN4
MTMR14
MYL12B
TPM2
C2orf49
POLR3F
DZANK1
TAMM41
OTUD7B
TP53RK
TMEM230
SCAF11
SGO1
ZNF212
KYAT1
ARHGAP24
HSD17B11
WASL
MATR3
PPCDC
KLHL7
INO80C
ZNF609
ERCC6L2
ATP6V1E1
DCAF10
FREM2
MEF2C
NUF2
MMADHC
TRIM55
ZNF397
PUM3
SLC38A7
ATP5F1E
KAT6A
SETDB1
MTERF1
RHOJ
ZNF644
NKIRAS1
ZSCAN30
SHPRH
RPL15
TNFRSF19
WDPCP
MDH1
NEXN
WARS2
FAM240C
CAV3
CRBN
NUP107
RPL27
ARID1A
FAF1
COMMD1
RTN4
MOB4
KANSL1L
KRT80
ZNF830
CCT6B
RAB5B
CITED2
DAB2
CFAP69
HRC
PCOTH
MIPEP
CDC7
XRN1
CHMP7
CCAR2
FANCD2
TTC26
MTFR2
ATP5MC1
MC2R
ZNF343
COMMD2
ATR
ICE2
SLC38A2
TMF1
THOC1
UBXN2B
EPHA3
SMARCE1
TRMT5
SLC38A6
FDFT1
STX16
METTL25
CCDC59
DMAC2
C5orf51
KRR1
EIF4A2
ZNF292
PSIP1
CCNC
NDE1
MARF1
C3orf14
DTNA
NXT1
SEMA3A
MFN1
RCHY1
ARNT
ZNF684
PEX2
OGFRL1
CDC37L1
MEF2A
TM9SF4
INKA2
DDX20
TMCO1
IPP
HFM1
CALM2
LIMCH1
HBS1L
LEMD3
ERMARD
MAPRE2
DMTF1
ZCWPW2
AZI2
KRIT1
ANKIB1
ERLIN2
EPM2A
ZNF112
PREPL
CAMKMT
ZMPSTE24
GPN1
CCDC121
TBPL1
ANKRD50
SPAG8
RESF1
ALG9
RPS12
CXXC5
GNG11
DMPK
HOMEZ
HPS5
GTF2H1
CYCS
CNOT2
TXLNB
CEP120
METTL15
KIF18A
BECN1
SERPINI1
PDCD10
LSG1
MRPS23
ZER1
NFIB
SLC33A1
PUS10
PEX13
NBPF1
ATG4C
ZBTB6
HBP1
CFLAR
RAB11A
RARB
SLC35A1
SUGT1
PDAP1
BUD31
NME1
FAM98B
ELOVL6
TMEM39A
LARS2
FRA10AC1
PACRGL
TOMM5
UFM1
STARD4
GADD45A
GMNN
COPS4
SCN3B
DHX8
HIPK1
ACHE
OPA1
FZD1
COMMD3-BMI1
COMMD3
ZCCHC3
MTRF1L
VAMP4
MYCBP2
CPED1
SLC24A1
RPL5
ZCRB1
PPHLN1
COX10
RFX3
HNRNPDL
DDX5
CEP95
APBB2
ELAPOR2
NRAS
TAF13
ALLC
PARP2
PATL1
ZFAND5
HSPE1-MOB4
HSPE1
HSPD1
ING3
MAGI3
CTNNAL1
DUSP6
OXNAD1
DPH3
DGLUCY
NUP54
NDUFV2
GPATCH8
RPS6KA5
SHOC2
BBIP1
PLEKHM3
PPIG
NDUFAF5
ESF1
ANKRD18B
ZRANB2
NEMF
STAG1
THAP5
DNAJB9
ACTR3
STARD3NL
CCN1
MTHFR
CLCN6
SMG8
YTHDF2
DLAT
RIN2
ANO6
EMSY
SCNM1
LYSMD1
GCLM
TRIM45
LDHB
SLC35D1
NUDCD1
TOP3A
SMCR8
PHF5A
ACO2
PCNP
CCDC77
KDM5A
CCDC169-SOHLH2
CCDC169
HACL1
BTD
ATP2A1
ADGRL2
ZNF780A
SLC9B2
PTPN1
ETV4
PLSCR1
TUBE1
FAM229B
RPL21
YTHDC1
SECISBP2
DNAJC24
DCDC1
FOXJ3
RBMS1
ZNF780B
PLS3
MKRN2
CBLB
MTIF2
CRNKL1
CFAP61
CCDC43
USP15
CTH
PIGK
GTF2A1
SNIP1
EIF2AK3
CLDN12
RNF6
TRMT6
MCM8
DPH5
PPP1R8
EHBP1
DBN1
SRRM1
HMHB1
PRDX6
SLC9A8
KDM8
PRKACB
INTS9
HMBOX1
DBT
SULF2
TAF7
PNO1
CSDE1
POMP
METTL7B
ZNF226
BRIP1
WWP2
PSMC2
AIFM1
TEFM
GINS1
SCAND1
MRPS31
SLC2A12
ERLIN1
SLIRP
ALKBH1
RPS29
NOTCH2
NAA38
RPL24
RHOT2
USP16
TUT4
RBM12
PAPOLG
CPNE1
TFPT
PRPF31
OAZ3
SUGCT
MPLKIP
UBXN4
NBPF15
POLI
PGM5
RNF20
WNT2B
RAPH1
USP30
AGBL3
SAV1
RAB32
VPS45
CLUAP1
TRMT10C
SVOP
OSBPL1A
NCOA5
ETAA1
RTTN
GAR1
POLR2K
TAF1A
KRCC1
TMEM242
UTP23
DNAJC19
ZBTB40
TMA16
GBE1
HELB
MTREX
DHX29
MCL1
SRBD1
GOLPH3L
CYB5R4
KIFAP3
SLC10A7
FBXO4
GPRC5A
MRPL1
LRIG3
LSM8
CDK6
WDR77
ATP5PB
SRSF2
MFSD11
SEC31A
MED4
THAP9
TRMT61B
NACA
RNF103-CHMP3
RMND5A
BAZ2A
C2orf73
PLK2
MXD1
SP2
CCDC138
DYNC2LI1
MIB1
MYL4
NDC80
METTL4
SMAP1
CSTF2T
CBWD6
GSTA4
DYRK2
USP42
RFC3
TTC23
LRRC28
FAM3C
CAVIN2
AGPAT4
PPIH
BMT2
EYA4
FAM133B
RPL11
PRKAG2
PRPF38B
ALKBH8
TNKS
CHD8
RLF
CBR3
ZC3HC1
CENPE
FRS2
OSER1
PHIP
PNISR
SLC25A32
DCAF13
TMEM209
APBA1
FKBP14
SCRN3
CIR1
FAM171B
SMIM12
SMCHD1
UGP2
PPM1B
AIG1
PSMD14
PSMA2
CADM2
SCYL3
TOR1AIP1
TMEM101
TXNDC12
BTF3L4
NUP35
NBEAL1
EXOC4
VIRMA
PROS1
RPL37
CDCA7L
CEP70
RSRC1
RBM22
RXYLT1
SUPT20H
HERC5
ABCD3
ZC3H15
UBXN7
MKLN1
ZCCHC17
SNRNP40
CBX2
FAM126A
RTL8B
MRPL30
MITD1
RPAP2
GLMN
MRPL11
GRB7
ALDH18A1
HNRNPA2B1
CBX3
SLC39A10
WDTC1
SLC45A4
EPC2
DDX17
EIF4G2
STRBP
NUDT3
TMEM199
POLDIP2
SLC25A25
NAIF1
GABARAP
SEPTIN7
WASF2
MRPL45
ERAL1
SFSWAP
GPR137
BAD
POLR2J3
GSK3B
RSF1
AAMDC
MSMO1
RBBP8NL
UBE3B
KCTD10
RGPD2
RGPD1
RPGRIP1L
FTO
GRHL2
PSMD3
DAGLA
FAM72D
FAM72C
SKIL
RAE1
SLC35B1
CUTA
STARD3
C8orf33
TOMM22
USP49
C1orf174
DDX42
CCDC47
SRSF1
ISY1-RAB43
ISY1
ILF3
TRIB1
SOCS2
ZZZ3
STAT6
LZTR1
MAN1B1
THAP7
UNC13D
BHLHE40
PGAP3
ERBB2
MIEN1
POLR2J
TRMT2A
RANBP1
IDH3B
PSMB7
SUPT6H
SDF2
FANCA
CLPTM1
AURKAIP1
SUPV3L1
GOLM2
SNRPE
SMN2
SMN1
YJU2
TET3
RPS26
SALL4
TBRG4
ATF3
ZNF408
ARHGAP1
MOCS3
DPM1
XPO7
SLC25A53
MRTO4
EMC1
NUP214
SRI
YAP1
POLR2J2
TSFM
GET3
PAXBP1
PFKM
SLC25A45
CDKAL1
FAM72A
CASC3
ATP5MF-PTCD1
ATP5MF
SAP30BP
RECQL5
TRMT1
FLOT2
ZSCAN22
U2SURP
ZNF165
ZNF383
SENP1
AXL
CDK12
ZSCAN25
TAS1R1
NOL9
C16orf91
FLOT1
ZDHHC6
VTI1A
GATB
ZBTB45
WWOX
DDX41
ATAD2
NDUFA2
IK
EIF2D
SMG7
GFM1
PMS1
ORMDL1
RTF2
VAC14
SLC25A11