ChIP-Atlas: Target genes

Potential target genes for HDAC3

Query protein: HDAC3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX8976676 | KYSE-410
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
HDAC3's Target genes

◢ HDAC3: Average

◢ SRX5930120: Acute myeloid leukemia

◢ SRX5930121: Acute myeloid leukemia

◢ SRX017705: CD4+ T cells

◢ SRX5457145: K-562

◢ SRX5457146: K-562

◢ SRX8976672: KYSE-410

◢ SRX8976673: KYSE-410

◢ SRX8976674: KYSE-410

◢ SRX8976675: KYSE-410

◣ SRX8976676: KYSE-410

◢ SRX8976677: KYSE-410

◢ SRX8976678: KYSE-410

◢ SRX8976680: KYSE-410

◢ SRX10045306: LNCAP

◢ SRX10045307: LNCAP

◢ SRX3401278: MCF-7

◢ SRX3401281: MCF-7

◢ SRX2140209: MM.1S

◢ SRX5930140: RH-4

◢ SRX5930141: RH-4

◢ SRX059713: VCaP

◢ SRX059714: VCaP

◢ HDAC3: STRING

MRPL11
GRB7
MTRNR2L8
MTRNR2L2
TMEM199
POLDIP2
SLC45A4
SFSWAP
ERAL1
RBBP8NL
UBE3B
KCTD10
RBM48
PEX1
GRHL2
STARD3
NAGPA
STAT6
TOMM22
TSR3
GNPTG
VIRMA
C8orf33
CRBN
BHLHE40
C1orf174
TRIB1
FLOT1
MIEN1
POLR3F
DZANK1
MOCS3
DPM1
LAMP1
SALL4
SLC35B1
YAP1
TET3
PHAX
IDH3B
MRPL45
PSMD3
THAP7
TRMT1
MTBP
MRPL13
SOCS2
KAT8
NEURL2
CTSA
PSMB7
ZZZ3
FLOT2
SUPT6H
SDF2
UNC13D
DNAJC11
EIF5A2
SPNS1
POLR2J
LZTR1
EIF2D
SLIRP
ALKBH1
RGPD2
RGPD1
CLPTM1
SAP30BP
RECQL5
HAGH
FAHD1
MTRNR2L9
VAC14
POLR2J2
POLR2J3
ZNF335
ATP5MF-PTCD1
ATP5MF
SMG7
MRTO4
EMC1
GATB
PFKM
SENP1
METTL25
CCDC59
GET3
SMN2
SMN1
CDKAL1
SEMA3B
PLAGL1
PGAP3
ERBB2
LANCL2
CENPBD1
SUPV3L1
RTF2
TMEM41A
ZBTB45
RBBP5
ZNF383
SLPI
FAIM
SRI
AXL
SKIL
PSMD1
FAM98B
SUMF1
MRPS15
ABT1
AAAS
ISY1-RAB43
ISY1
DDX41
TRAF4
ZSCAN22
COASY
REEP4
TXN2
MTA3
KCNG3
C16orf91
RRP15
HES1
TFPT
PRPF31
GOLM2
SART3
ISCU
NUP214
UBE2I
RPS16
CACTIN
HEXA
RAE1
BIRC2
RPTOR
LSG1
DMAC2
ATG14
NGDN
SYT12
LAMA3
VPS50
HEPACAM2
SLC25A53
GPRC5A
SLC25A45
ATAD2
KRR1
LRRC23
ATF3
LRRC46
SUPT7L
SLC4A1AP
STX6
DNAJC30
BUD23
CLDN22
ZCCHC4
RCOR3
SEPTIN9
LTO1
PHB2
STX16
U2SURP
ACP3
ZDHHC6
VTI1A
TSFM
ZFYVE26
NUDT5
CDC123
NDUFA2
IK
GFM1
E2F4
TOP3A
SMCR8
FOS
NCAPH2
LMF2
ZNF408
ARHGAP1
DOK7
RAD51AP1
C12orf4
WASHC5
NSMCE2
SERP1
EIF2A
COPS7B
SSNA1
ANAPC2
TRMO
ZNF576
IRGQ
UPK3B
PAXBP1
ECH1
KMT5B
PRPF6
ELP5
CTDNEP1
SNRPC
EPS8
LRRC29
FAM133B
SLX4IP
TSN
PUS10
PEX13
RPS26
NCBP2AS2
NCBP2
DNAJB12
DHRS13
MAP3K7
NUP155
BLOC1S1
TTC32
PRR3
GNL1
PRSS22
PKP2
TMEM248
PDAP1
BUD31
SUPT4H1
TMEM203
NDOR1
EIF4A2
NFKBIZ
TRIQK
PLEC
PDRG1
PPWD1
CENPK
SEC13
FAM162A
CCDC58
GINS1
CCNT1
SPHK2
RPL18
TGFA
EIF3F
LIMA1
MAIP1
LRP6
NVL
OAZ3
UBE2L3
FEM1A
ZSCAN25
MRPS7
GGA3
BIRC3
DGAT2
TRABD
GBA
NFKBIA
TBL1X
TIMM23
HSPBP1
COLEC12
COQ5
TRRAP
ORAI3
EFR3A
RRNAD1
ISG20L2
TAS1R1
NOL9
URM1
GCN1
MCM7
AP4M1
SERPINE1
LRRC47
KLK6
C2orf49
CASC3
SEMA5B
DPH7
HNMT
TBRG4
MAGOH
PHF5A
ACO2
SMIM6
POMZP3
RFC4
UBQLN1
RTEL1
NDUFA9
AKAP3
KCTD5
DDIT3
HUS1
TRIP4
ANXA3
RAB3IP
TIMM50
KMT2A
SNRPE
MAN2C1
MAPKAPK5
KPTN
PELATON
VPS11
PDCD6IP
TXNL4B
DHX38
PEPD
ATF6
FANCD2
COQ8B
FAM83A
RASSF6
SLC31A1
FKBP15
GABRR1
TNFAIP1
IFT20
NOL8
CENPP
FSCN1
GTF3C5
ALG10B
CRKL
RPL7L1
ING4
SPINT2
PSENEN
KRT78
C5orf51
ZNF2
DHRS3
RPS14
TEFM
HABP2
TIGD5
EEF1D
ANTKMT
TRMT2A
RANBP1
INTS1
KMT5C
POLE3
C9orf43
UQCC1
MRPL1
CPSF1
KRT80
SF3B3
COG4
ALKBH3
LRCH4
FBXO24
ID1
SMG8
PSMD6
REXO1
MRPL27
EME1
WDR24
PNMT
POU5F1
DDX23
METTL2A
RBM28
GLCCI1
CDC23
DNAJA3
CMTR2
NUS1
CLCN7
DNAH5
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
TMEM120A
DPP3
GSDMD
MAF1
CDK5RAP2
GOLGA3
FOCAD
PRR15
ZGPAT
ARFRP1
HSPA9
ENO3
MYNN
ATP6V1G1
ERP27
NDRG1
MAP2K3
NME1
TMEM18
LMAN2
GTF2H4
COMMD2
PMPCB
PIGO
SCAND1
ENOSF1
CEP63
ANAPC13
SNIP1
MRPL53
TMEM127
CIAO1
MBOAT7
NUDCD3
PSMG2
CEP76
GFM2
SREK1IP1
CWC27
GRWD1
FCF1
AREL1
BCL3
LEKR1
TMA16
ACSL1
RWDD1
GOSR2
TM9SF4
PHF3
HR
PPARD
ANKRD36C
AMDHD2
VWA7
TTC31
CCDC142
PIK3C2B
ARL14EPL
LSM14B
LIN52
ALDH6A1
KAT5
KLHL32
MED1
NDUFAF4
GJB5
EXOSC10
TFAP2C
PFDN1
SOD2
SNRNP200
WTAP
SLC7A6OS
PRMT7
RABL2A
LARP1
SCAF11
RPS9
RFFL
DDX56
NR1D1
AURKAIP1
REXO4
TIMM23B
PARG
MRPS33
GRK7
PPIP5K2
BBS10
SSBP1
TMEM40
ZNF17
GTF2IRD2
SSBP2
ZNF629
CTDSP2
ALG10
ETV4
MTIF2
PSMD12
MINK1
TMEM242
MRPS22
RAB24
PRELID1
COA8
BAG5
SMARCD1
NDUFB5
MRPL47
TPD52L2
ALDOA
MRPS34
EME2
MDM2
CEP162
USP30
LRFN4
GPR39
DUSP6
CHRM3
C12orf73
NUP107
EIF2S1
ATP6V1D
EIF1AD
BANF1
NDUFAB1
XAB2
TAGLN2
SH2D4A
FMN1
CCDC124
SKIDA1
HTRA2
PRKAR1A
PROCA1
RNF223
HEMK1
RPL37
ADPGK
XRCC6
DESI1
SF3A3
MED20
BYSL
PNKD
MRPL38
UBE2Q1
METTL2B
RCE1
RBM19
FAM110A
TMEM39A
FGD3
TRIM56
MTARC1
TAF6
CNPY4
RAD52
TBCB
POLR2I
ZNF805
GLIS2
VPS52
RPS18
GTF2H3
EIF2B1
FAM222B
EVPLL
LEO1
TSSC4
UNC50
COA5
WDR53
FBXO45
IPO11
PROSER1
NHLRC3
JRK
ZNF623
MB
CCZ1B
LENG8
TWF1
TJP2
ZNF497
ATP6V1H
SYT1
HAX1
PARL
IGFL4
TOMM40L
BNIP1
TMPRSS4
VARS1
RHOT2
MRPL4
MCCC1
PLXNB2
NAPA
COMT
PPP6C
MRPS11
MRPL46
CSTF1
AURKA
RASEF
DNAH2
ZSCAN21
BRPF1
SETD3
CCNK
UBFD1
EARS2
RNF128
NOP16
HIGD2A
STAM2
TPGS1
FBXO11
IVNS1ABP
RECQL4
LRRC14
MRPL20
SLC33A1
SART1
TRIM29
MPHOSPH10
MCEE
GFUS
KLHDC7A
LGALS8
LMNA
WDR72
TINAGL1
FBXL18
RPS21
LYRM4
FARS2
PLEKHG6
CTTN
KIAA0100
SH2B1
KAT6A
PDE12
ANAPC5
NAMPT
SRRD
HPS4
TCERG1
FADD
EXOSC3
NSFL1C
PDE4DIP
STYXL1
MDH2
PTP4A1
MRM3
GLOD4
DCUN1D5
BRIX1
CCAR2
RNF139
COIL
CIAO3
C6orf132
ARHGAP32
PTCD3
POLR1A
PA2G4
RASA3
TMEM123
LCMT2
ADAL
CLCF1
OPA1
RNF39
NR1H2
UMAD1
SNRPD3
GUCD1
ZKSCAN4
LAPTM5
NDUFS7
GOSR1
TMED10
PPAN-P2RY11
PPAN
STPG2
HBP1
TUBA1C
PSMD5
RFESD
TBCK
AIMP1
UBOX5
FASTKD5
DHX8
ZNF3
OGG1
HIF3A
SUGCT
MPLKIP
ZNF213
MYL12A
MRPS23
XPC
LSM3
COMMD5
EIF5
TUBGCP6
SCARB1
KCTD11
USP32
ZC3H3
BBS1
ZNF256
MDH1B
FASTKD2
ZNF302
SYVN1
ESRP1
KRIT1
ANKIB1
METTL1
EEF1AKMT3
ZNF668
ZNF524
FIZ1
CDK11B
CDK11A
NEMF
ZNF646
ARHGEF5
EBPL
TNRC6B
IQCG
POR
RPL35A
KLHL18
KIF9
RPS29
LRR1
TRIAP1
RPL6
PTPN11
ALDH18A1
HNRNPA2B1
CBX3
SLC39A10
GET4
WDTC1
AP5Z1
EPC2
DDX17
EIF4G2
STRBP
NUDT3
WASHC2A
SLC25A25
NAIF1
GABARAP
SEPTIN7
WASF2
WASHC2C
GPR137
CDK4
BAD
GSK3B
ATP6V0D1
RSF1
AAMDC
MSMO1
RPGRIP1L
FTO
DAGLA
FAM72D
FAM72C
CUTA
RPUSD4
FAM118B
SMARCD2
USP49
DDX42
CCDC47
SRSF1
ILF3
MTHFR
CLCN6
SERPINI1
PDCD10
COMMD9
MAN1B1
VPS33A
SLC35A5
ATG3
OSGEP
APEX1
UVRAG
FANCA
MCOLN1
YJU2
RAD9A
XPO7
WDR74
CLN3
HPS5
GTF2H1
INO80C
FAM72A
MFSD1
PPP6R1
ZNF165
DVL2
CDK12
SLC4A2
WWOX
PMS1
ORMDL1
CCDC200
NDUFA4
SLC25A11
RNF167
PCIF1
UBE2B
CDKL3
PIP4P1
INTS10
GP1BB
E2F6
WBP2
MEMO1
UBE3C
CCDC97
MOB1B
MEF2C
KANSL3
PTBP1
PSME3
TNC
HNRNPH2
GLA
ITGB3BP
EFCAB7
KCNMA1
UBAP2L
C1orf43
PASD1
WDR62
THAP8
TPP1
SUMO3
SH3GL1
THRAP3
GPATCH3
CLSTN1
ST7
DHX35
ANKS6
ELP3
HM13
SPATC1L
DAZAP1
MIER1
SUSD4
XRCC5
TBC1D30
GNS
SLK
ADGRB3
DENR
LPCAT3
FGGY
TMEM116
ERP29
ADGRL1
ALG6
SHLD2
GLUD1
SUMO2
ABCB8
SCAMP5
DICER1
ADAM23
BAX
OTUD7A
TNPO3
KDM3A
RXRA
TRUB2
COQ4
ARID5B
RMND1
ARMT1
BMS1
FAM72B
SMARCA4
DDX46
ZNF507
PRMT3
RABGAP1L
QRICH1
KDM1A
SYNCRIP
BLOC1S4
RALGDS
NPEPPS
ATP6V1C1
STAU2
TIMM22
STRA6
HDAC6
MYCL
BAG6
APOM
ACVR1B
NEXN
RRAGC
SBK1
SCYL3
PRAME
AP2A2
PPP5D1
NSD1
CALM3
KDM4C
RBM39
TMEM59
TCEANC2
TFDP1
HOOK2
ZNF830
CCT6B
CHMP7
COX16
GRHL1
ZNF33B
HOXC13
PRKCA
LUC7L2
CAPRIN2
SFXN1
KLHL12
EIF3H
MAN2A2
KDSR
PEAK1
HMG20A
NFU1
KDM7A
NUF2
NSF
RNASEK
SAP30
BACH2
FLYWCH1
TM2D2
ADAM9
CBX7
RPS11
FBXL3
DIP2A
AFF4
MINDY2
JMJD1C
CHD7
WWP1
USP28
FASN
UBE2E2
AIFM1
SLC24A1
CACNA2D2
SPTAN1
S100A2
RFX1
PLEKHF2
FMC1-LUC7L2
FMC1
RCHY1
CCDC174
WBP1L
SYT7
ACTN4
TSC1
GFI1B
RBPJ
DTNB
PHF21A
CFAP206
KMT2D
CUTC
COX15
SNX16
C17orf58
UTP3
RPL5
PRKCE
ZNF609
MSS51
DNPEP
ATG101
FCHSD2
PTK2
PATZ1
C1QTNF1
RPL23A
MAP3K1
MARCHF2
IKZF2
PHIP
COMMD4
TBL3
ZC3HC1