ChIP-Atlas: Target genes

Potential target genes for HDAC3

Query protein: HDAC3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5930141 | RH-4
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
HDAC3's Target genes

◢ HDAC3: Average

◢ SRX5930120: Acute myeloid leukemia

◢ SRX5930121: Acute myeloid leukemia

◢ SRX017705: CD4+ T cells

◢ SRX5457145: K-562

◢ SRX5457146: K-562

◢ SRX8976672: KYSE-410

◢ SRX8976673: KYSE-410

◢ SRX8976674: KYSE-410

◢ SRX8976675: KYSE-410

◢ SRX8976676: KYSE-410

◢ SRX8976677: KYSE-410

◢ SRX8976678: KYSE-410

◢ SRX8976680: KYSE-410

◢ SRX10045306: LNCAP

◢ SRX10045307: LNCAP

◢ SRX3401278: MCF-7

◢ SRX3401281: MCF-7

◢ SRX2140209: MM.1S

◢ SRX5930140: RH-4

◣ SRX5930141: RH-4

◢ SRX059713: VCaP

◢ SRX059714: VCaP

◢ HDAC3: STRING

WASHC2A
HEXA
LAMP1
AP5Z1
KCNMA1
TNC
NEURL2
CTSA
WASHC2C
STRA6
ARID5B
CCDC200
GET4
SUMF1
KAT5
CLCN7
ZNF668
COMMD9
WBP1L
CLN3
C1QTNF1
RMND1
ARMT1
MSS51
RRAGC
PVALEF
AATK
TRMO
SEMA3D
MTHFR
CLCN6
MTRNR2L2
MYOG
FHL2
VPS33A
AMDHD2
ZNF507
NAGPA
MTRNR2L8
DOK7
SLC35A5
ATG3
HAGH
FAHD1
FSCN1
ETV4
PDE4DIP
C20orf141
SPNS1
SULF1
SYNPO2L
TBL1X
MEF2D
BAX
HNRNPH2
GLA
ATP6V0D1
CLIP1
CEP162
TBC1D1
IFNAR2
UBE2Q1
MXRA7
CDK4
HRCT1
TNNT1
CCN2
MYBPC2
TMEM167B
GPSM1
INO80C
FREM1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
ACOT9
MCOLN1
ABLIM1
AFAP1
CDCA7L
NR4A1
CHD3
CNN3
BLOC1S1
CREB5
OPRD1
HHIPL2
ABHD2
HES1
MFSD1
DGLUCY
HOXC13
RYR1
SERTAD2
HNRNPD
EYA1
ATP13A5
VPS11
LFNG
HPS5
GTF2H1
ETS1
KDM1A
MINDY2
GUCA2A
TRIM62
FAM110A
AMOTL2
INTS12
GSTCD
SMYD1
TRIM55
ZNF609
POLR2M
CCNI
HERC5
TXLNB
SBK2
SCN3B
SMARCD2
CITED2
YBX3
TBC1D9
SPATC1L
KAZN
ATP6V1C1
MAST4
OSGEP
APEX1
DUSP5
ZAR1L
BRCA2
GRN
WASHC5
NSMCE2
KDM3A
HMX3
COMMD4
TBC1D19
BLCAP
ZBTB18
MNAT1
PPP1R3D
FAM217B
TNNT2
INTS10
KCNF1
DUSP6
NCAM1
RIN2
ITGB3BP
EFCAB7
SLC4A2
CDK5
ATP6V1H
CXXC5
CUTA
KDSR
S100A2
MRPL44
ZNF32
TCEAL7
DYSF
ARID5A
LACTBL1
ARID1A
SSX2IP
ATP6V1G1
SNRPB2
TCF4
PIP4P1
MSMO1
FAM240C
SUPT7L
SLC4A1AP
CAPS2
LTBP1
KANSL3
FUT10
MYL4
SSTR5
USPL1
HMGB1
MAPRE2
C2orf49
CFLAR
VASH2
KLHL12
TXNIP
RBM28
MTF2
PEX3
ADAT2
RGS3
GFRA1
LIMCH1
MARCHF8
RAD9A
GTF2B
PROSER1
NHLRC3
INMT
KANSL1
EPHA3
PSMD3
MYLK2
SSBP1
NAV2
MAPK10
STYXL2
MTRNR2L9
RPUSD4
FAM118B
VPS50
HEPACAM2
WDR74
NDUFA4
SELENOH
METTL7B
SLC25A34
PELO
ITGA1
ICE2
CCNG2
ELOVL6
PTPRD
COLEC12
ZNF292
SH2D3C
EFNA1
MRPS23
OSBPL7
ANKRD12
TBC1D30
GNS
SUGCT
MPLKIP
CHMP2B
TPP1
MUSTN1
ILF3
RNASEK
SHB
HMGCS1
DES
RBPJ
CALM2
IRF2BPL
TACR3
MTRF1L
SMAD3
HES6
PPP6R1
INKA2
DDX20
FOSB
MC2R
ECH1
ALLC
MDM2
E2F6
PAFAH2
NAGLU
TBPL1
NAA38
PMEPA1
RCBTB1
ZBTB40
PLEKHD1
SH3BP4
STMN1
CRBN
MYLK4
IRF9
BHLHE40
SNX16
THOC1
IPP
ACHE
NOXO1
TSR3
GNPTG
C5orf51
AZIN1
CDC42EP3
AMPD3
PTK6
SYTL3
SSBP2
ARHGAP24
COMMD2
RBSN
CGGBP1
C3orf38
UTP18
MBTD1
ARFGEF2
SRSF7
ATP8A1
WWOX
CDK5RAP1
RASGRP3
MAMSTR
G6PC3
PKM
AASDH
UVRAG
ZNF217
FZD1
BCAT1
NUP107
HIF3A
VGLL3
CTHRC1
COPS4
METTL9
ANKRD1
OTUD7B
TOR1AIP1
PELATON
RPS7
SREBF1
VTA1
NMBR
NOTCH2
SLC24A1
TRIL
STING1
DVL2
SH2B1
SHPK
CTNS
CHRNA1
GTF2A1
PSIP1
MAP3K7CL
NFE2L2
MTFR2
TTC9
KDM4C
LZTS2
APP
GRAMD4
ARSG
USP15
SAV1
SYT7
RPL27
TTC26
YARS1
S100PBP
NACA
RBMXL1
KYAT3
RTN2
SYNRG
HSPB7
MADD
PUM3
RARB
TSPAN33
TRIM72
ELAC2
NDUFV2
NRAS
NBPF1
KYAT1
SPATA9
RHOBTB3
DYRK1B
FSD2
SLF2
DUSP10
MTBP
MRPL13
USP30
ST7
NUF2
RAB5B
ANKRD40
TNFRSF19
IMPACT
NEXN
TMEM100
NEBL
IL21R
CPA1
AAAS
CCDC107
TNNC2
COX16
PFDN4
ARL14EP
MRPS31
WDR11
ZBTB26
RAMP1
RPS12
PRR5
THAP10
LRRC49
GSPT1
PRR5-ARHGAP8
TM9SF4
DNAJC25-GNG10
DNAJC25
DRG2
LRRC17
ZNF654
ZNF572
MRPL34
DEPTOR
MYL12A
KAT6A
RTTN
ACVR1
CCDC88A
POMZP3
ATP6V0B
KDM8
IKBKG
ATP2A1
RARA
NME1
TARS2
BRF2
NKIRAS1
NR1D2
KIAA0895
ANLN
JMJD1C
GOSR2
WBP4
ELF1
STAT3
MTERF1
ZNF335
RGMB
GPRC5A
ZCCHC4
MSL2
PRKAG2
MYO18A
ASB18
CAV3
HRC
NFIB
KLF7
TMEM242
MAST2
SNRPB
STX16
HDAC9
SYTL2
RHOJ
MCM6
GBA
AIFM1
TEFM
ARMC8
PBK
CDK6
SLC33A1
KLHL32
NDUFAF4
TSFM
TOP3A
SMCR8
PLEKHM3
FAM185A
SETD3
CCNK
ATR
VPS13B
INO80B
FLOT1
NAPA
RPL5
CBWD5
CBWD3
CBWD6
WDR75
MMADHC
PLSCR1
CDON
TNFRSF12A
RBL1
DCLRE1B
AP4B1
SH2D7
RPN2
MROH8
SF3A3
MTHFD2L
CASZ1
PALLD
AXL
ZSCAN30
ZCCHC3
PIKFYVE
TBL1XR1
TERF1
PSMB7
MEMO1
MPHOSPH10
MCEE
THAP5
DNAJB9
RUSC2
PNKD
MTMR14
PCNX4
POLDIP3
EPM2A
BET1
ARHGEF6
PTK2
LAMTOR1
COMMD8
DMAP1
CLK1
NPEPL1
DDX1
VMP1
PTRH2
PDZRN3
PRDX6
PLAAT5
NSUN4
KCTD9
CDCA2
POLR1F
H2AZ1
COL12A1
ELAPOR2
LRRC58
RFC1
SEMA6A
LEFTY1
IRAK1BP1
ATF3
THRAP3
FOS
CBLL1
SLC25A32
DCAF13
NLK
ARL8B
USP37
CNOT9
SULF2
MFAP4
RBM39
KLHDC10
HELB
MTREX
DHX29
WDR36
CRNKL1
CFAP61
AIG1
EIF2B3
GTF2H2C_2
GTF2H2C
LRTM1
OBSL1
INHA
TRIB3
SGIP1
SLC1A4
RBM24
BDKRB2
ACSL3
PLS1
SDHD
RCAN1
OSBPL9
EML2
HBS1L
ID1
HSPBAP1
MFAP3L
FITM1
USP47
MRPS5
CXCL3
CALD1
FAM200B
LRIG3
ZC3H15
XKR7
TRIM32
BMPER
ASTN2
SERPINI1
PDCD10
CSTF1
AURKA
SLC30A6
DDX18
TMBIM4
APBA1
IARS1
PCOTH
MIPEP
SECISBP2L
HOMER3
DHX35
TTI1
RPRD1B
STX18
NKAP
GBE1
KRTAP4-1
KIAA1522
CTBP2
METTL3
RPS6
GRPEL2
SVIL
HIBCH
DCTN1
MEGF10
C12orf66
RPL11
TGFBR2
RAB18
NPAS4
CSRP1
PALB2
DCTN5
ARNT
SLC25A26
FAM200A
DENND2A
ZMIZ1
SLC51B
UBE2B
CDKL3
UBC
SS18
PDCD11
ATP5MD
PGM1
DPH5
PDSS2
PHACTR2
DOCK7
MRPS15
CCDC174
MAPKAPK3
CISH
YTHDC1
SDHAF3
TPM2
RXYLT1
PIGL
ECHDC1
CYP2U1
CACNA2D4
PSME3
ZCCHC24
TAMM41
MED28
IMPDH1
ITGB1
NYNRIN
FAM186A
CCSER1
GRWD1
UBE2D3
CCNC
STK36
RNF25
CLDN12
DAB2
HMGCR
FLRT3
ZSWIM7
WASHC4
TTC19
STRIP2
NT5C3A
OXNAD1
DPH3
ERGIC2
STX5
CHRNG
VPS45
TAOK3
KRT80
SLC26A11
RUNX1T1
PPCDC
N4BP2L2
NUDT9
UBXN4
AAR2
RNF6
PIGC
MCL1
TRDMT1
RTCA
PTDSS1
PMAIP1
MTERF3
SEPTIN9
ATF6
TUBE1
FAM229B
CNOT2
SLC38A2
ZSCAN9
NFIA
ERMARD
HIPK1
RBMS1
EIF2S2
ZMAT1
MMAA
LOC100996750
KRTAP4-7
HECA
NDUFB5
MRPL47
AMOTL1
PRKAB2
CHD1L
ZNF780B
PLS3
PGM5
CLUAP1
PXDNL
NANP
POLR3F
DZANK1
PNISR
C21orf91
POGLUT3
STAC3
CAP2
SRI
PAXBP1
CACYBP
MYL12B
ETAA1
ZNF397
ZCWPW2
AZI2
AHI1
ACTR3
RTN4
GNG11
PRR29
NDUFS7
PIH1D2
NKAPD1
SEC31A
THAP9
POLE4
NUP42
SIKE1
ZNF790
ZNF407
ZNF155
TRAM1
SETBP1
PYURF
PIGY
NFATC2
IGFBP5
HERC3
CLASP1
SASS6
SPRYD7
PELI2
AURKAIP1
BRD4
SETDB1
ATF7-NPFF
ATF7
SP2
C10orf88
PEF1
ATP5F1E
STX17
SP9
FGGY
VCPIP1
C8orf44-SGK3
SLC36A1
HBP1
RIOK3
VIPAS39
AHSA1
TOMM34
STK17B
RECK
NXPE3
ANGEL1
ADGRL1
DENND2B
TIMM10
B3GALT5
MTX2
DTNA
RAD18
PTPN21
PIPOX
NUB1
NFXL1
SKIL
MED18
C8orf37
CCDC146
NUFIP2
MRPS18C
HELQ
UTP25
POLR1B
STT3A
ANKRD53
ZSWIM3
ACOT8
GCLM
ZBED5
TPRA1
DUSP3
CNOT4
H2AZ2
DCTN6
MORC2
SUCLG1
ZNHIT6
KRTAP5-3
TP53RK
TNK2
RPL9
LIAS
CDC25B
RFC3
DR1
SHISA2
SH3BP2
ARHGAP29
HUS1
RCHY1
DARS1
BRAF
TYW3
CRYZ
TACO1
OSBP
UQCRB
CCDC138
TMEM106B
TAGLN3
SCFD1
KCNH8
FBXO10
ANKRD65
ACOT11
SS18L2
SEC22C
EMC2
CCDC171
GPR39
CEP120
ALG10B
TRMT6
MCM8
IST1
UFM1
CTNNB1
BLOC1S5
ZBTB38
IMMP1L
ELP4
CWF19L2
CCDC102B
CAMK2D
BCAP29
DNAJB2
ROCK2
CAND1
SF3B5
ZNF484
SF3B6
FAM228B
CSNK1G3
SLC35A1
ERLIN1
SQLE
SNX5
RBBP8
NUDT4B
NUDT4
MGME1
MEGF9
SOCS2
SLC9A1
TBCK
AIMP1
POMP
RPL31
TPK1
MYCBP2
SLC25A36
SDCBP
KLHL40
THAP1
RPL37
ARHGEF12
POT1
NUCKS1
NCSTN
COPA
ICAM2
ADNP
VPS25
CDC7
PEX2
ADGRL2
FRS2
SELENOI
RHOBTB1
LYPD6
ETV1
CFL2
BZW1
ADGRF3
PSMA1
ARHGAP28
THUMPD3
RPL23
SKAP2
ANO6
FUCA2
TOM1
ODF2L
POLR3D
CPED1
NAA16
MTRF1
MPG
MED13
CEP41
YAP1
EIF2D
BIRC2
C12orf73
MDM4
UBB
C17orf75
CLTC
CD63
TTC21B
MRPS10
TMEM64
RPF1
STARD3NL
PHTF1
MAN1A2
RPL21
SCAND1
SLC44A1
RAB30
SRP19
ZSWIM4
CMSS1
ZMYM5
ING3
IDNK
U2SURP
NUDCD3
TNPO3
PSMD5
SPHK2
RPL18
REXO4
SGO1
POLR3B
TUT1
FNTB
RPL15
ZNF684
ALK
ANKRD46
FOXO3B
MTR
EHBP1
CHCHD3
FBXO48
APLF
TOP1
EEF1AKMT1
AFTPH
ZNF408
ARHGAP1
YTHDF2