ChIP-Atlas: Target genes

Potential target genes for HDAC3

Query protein: HDAC3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX8976673 | KYSE-410
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
HDAC3's Target genes

◢ HDAC3: Average

◢ SRX5930120: Acute myeloid leukemia

◢ SRX5930121: Acute myeloid leukemia

◢ SRX017705: CD4+ T cells

◢ SRX5457145: K-562

◢ SRX5457146: K-562

◢ SRX8976672: KYSE-410

◣ SRX8976673: KYSE-410

◢ SRX8976674: KYSE-410

◢ SRX8976675: KYSE-410

◢ SRX8976676: KYSE-410

◢ SRX8976677: KYSE-410

◢ SRX8976678: KYSE-410

◢ SRX8976680: KYSE-410

◢ SRX10045306: LNCAP

◢ SRX10045307: LNCAP

◢ SRX3401278: MCF-7

◢ SRX3401281: MCF-7

◢ SRX2140209: MM.1S

◢ SRX5930140: RH-4

◢ SRX5930141: RH-4

◢ SRX059713: VCaP

◢ SRX059714: VCaP

◢ HDAC3: STRING

MTRNR2L8
MTRNR2L2
MRPL11
TMEM199
POLDIP2
GRB7
ERAL1
SLC45A4
MRPL45
MTRNR2L9
C8orf33
SFSWAP
RBBP8NL
UBE3B
KCTD10
CRBN
RGPD2
RGPD1
BHLHE40
POLR3F
DZANK1
POLR2J3
PSMD3
CLPTM1
C1orf174
VIRMA
GRHL2
MIEN1
PSMB7
LAMP1
SLC35B1
RBM48
PEX1
PGAP3
ERBB2
TSR3
GNPTG
POLR2J
IDH3B
UNC13D
STARD3
LZTR1
ZNF383
ATF3
TFPT
PRPF31
RAD51AP1
C12orf4
TJP2
POLR2J2
ISY1-RAB43
ISY1
SMN2
SMN1
VAC14
SLIRP
ALKBH1
MTBP
MRPL13
SUPT4H1
HES1
HAGH
FAHD1
RBBP5
C16orf91
UBQLN1
TET3
GATB
DMAC2
NDUFA2
IK
NDUFB3
FAM126B
THAP7
STAT6
SOCS2
MRPS11
MRPL46
HEXA
FLOT2
SKIL
TRMT1
PHAX
STX16
RRP15
TOMM22
YAP1
U2SURP
PCNP
ZBTB45
UBE2I
SALL4
ELP3
NAGPA
KRT80
SLC25A53
LPCAT3
SUPT6H
SDF2
VPS50
HEPACAM2
MRTO4
EMC1
TSFM
SMG7
SUMF1
TRIB1
MOCS3
DPM1
SUPT7L
SLC4A1AP
TBRG4
CDKAL1
ZNF576
IRGQ
SAP30BP
RECQL5
SLC25A45
LMAN2
RPS26
TRAF4
TRMO
NEURL2
CTSA
CASC3
ATP5MF-PTCD1
ATP5MF
PFKM
SENP1
SNRPE
DNAJC11
GOLM2
ATG14
METTL2A
ZSCAN25
MFSD3
EIF3H
FAIM
SERP1
EIF2A
DDX46
SUPV3L1
BRIX1
KAT5
MTO1
METTL25
CCDC59
METTL2B
STYXL1
MDH2
HEMK1
REEP4
TFAP2C
RTF2
NDUFAB1
C19orf48
TBL1X
GET3
BNIP1
TTI1
RPRD1B
ZSCAN22
DDX23
UPK3BL1
TTC31
CCDC142
COLEC11
DDX41
CHMP7
ZNF17
BRF2
RAE1
EIF5A2
ZNF524
FIZ1
TRIP4
SYT12
POLR1H
ZNF3
DOK7
TAS1R1
NOL9
PPWD1
CENPK
GTPBP4
TOP3A
SMCR8
TIMM22
DIABLO
CCDC97
RAB3IP
ASB6
ZGPAT
ARFRP1
ATG101
ZZZ3
SRI
ZNF830
CCT6B
ATAD2
MAPKAPK5
HUS1
BIRC3
RCE1
WASHC5
NSMCE2
PDCD6IP
PHF3
VPS33A
NME1
LSG1
GTSF1L
ECH1
ZNF2
TXN2
AXL
PSMD1
BMS1
SLX4IP
UPK3BL2
LARP1
S100A2
MIEF1
PSME3
USP30
DPP3
FAM133B
DLC1
ZNF165
EIF1AD
BANF1
NFKBIA
VPS37A
CNOT7
SH2B1
EIF3F
MED20
BYSL
TUFM
PDAP1
BUD31
TIMM50
TJAP1
TBL3
TBL1XR1
PRR3
GNL1
ZNF408
ARHGAP1
SPHK2
RPL18
LRRC23
GTF3C5
SCARB1
WDR72
WDR18
GCN1
MED6
POMZP3
PBX2
RTEL1
ZC3HC1
RBM42
FIS1
DDX11
ATP6V0D1
TIPARP
ZRANB2
ZNF579
GFM1
GPATCH3
COX16
EVPLL
MRPS7
GGA3
ABCB8
ATP6V1C1
SSNA1
ANAPC2
GRK7
MTX1
TBC1D17
AKT1S1
YJU2
MRPL1
MED23
ZFP64
LANCL2
SEPTIN9
TTC32
PSMG2
CEP76
COPS7B
RWDD1
KAT8
KRR1
RXRA
UTP20
BIRC2
PNO1
PHF5A
ACO2
CDK5RAP2
PPFIBP2
NGDN
VPS11
FSCN1
NDUFB5
MRPL47
FAM162A
CCDC58
RPS12
SYT1
KCTD11
RPL26L1
CDK11B
CDK11A
PMPCA
ENTR1
PUS10
PEX13
COASY
SETD3
CCNK
FCF1
AREL1
YIPF3
POLR1C
TRMT2A
RANBP1
DNAH5
INTS1
SEC13
UQCRQ
GDF9
RPL23A
ERGIC2
PPP1R37
MTHFR
CLCN6
ZDHHC6
VTI1A
GTF2H3
EIF2B1
GRWD1
TSR1
NOC2L
PGGT1B
SGSM2
GLCCI1
TMEM101
DNTTIP2
DGAT2
RASEF
EIF3E
NDUFA9
AKAP3
ALKBH3
MUL1
EXOC5
AP5M1
AURKAIP1
BLOC1S1
RBM39
PHB2
RBM19
SEMA4B
MAP3K7
CDK12
NUDCD3
RPS14
PRSS22
NUS1
ZNF335
LRRC29
KMT2D
PFDN1
C5orf51
VWA7
LRFN4
ZFPL1
CDCA5
NOC4L
DDX51
CCNT1
DHRS3
SART3
ISCU
KMT5C
SLC9A1
NDRG1
TSN
MAIP1
SF3B3
COG4
TARS2
OPA1
CHRM3
SNRPB2
ASH2L
PLAGL1
WDR53
TSC1
GFI1B
FBXO45
KPTN
PNMT
ANXA3
URM1
RRNAD1
ISG20L2
HCAR2
MACROD1
OAZ3
DNAJC30
BUD23
FOS
MED4
COG2
IPO11
HR
FOXA2
FADD
SPNS1
SF3A3
TCERG1
PCID2
CUL4A
NDUFA10
MRPL55
PMS2
AIMP2
FLOT1
EIF2S1
ATP6V1D
MED1
ACP3
DHX35
MB
ADPRS
SETD1A
CLPB
LIMA1
SEC61B
MYL12B
PARL
RPL7L1
PIK3C2B
TAF6
CNPY4
HSPBP1
MBD6
TNFRSF12A
SPDYE14
SPDYE10P
TPRKB
MRPS26
UBXN1
MRPS15
AAAS
TAGLN2
MAPK14
CDC5L
TRIM29
CTTN
ZNF16
DENR
KRT17
PAXBP1
NUP107
ZCCHC4
MRPL48
ING5
FAM83A
GSN
ZMAT2
DRG2
LRRC46
BBS1
SKIDA1
TMPRSS4
MRPS34
EME2
AKAP10
PSMC3
SNRPB
GJB7
AP5Z1
CSTF1
AURKA
TMEM41A
SREK1IP1
CWC27
CDC23
LMNA
ZNF394
KMT5B
PTPN12
PTP4A1
MRPS22
GTF3C3
MAGEF1
TIMM23
DUS2
DDX28
MRPL40
HIRA
NFX1
RINT1
PPP5C
EPS8
PDE12
NUDT5
CDC123
TIMM9
KIAA0586
ADAR
TPD52L2
XPO4
SLC25A11
RNF167
SRP68
TRIM4
RBX1
SEMA6A
NMT1
DCAKD
TXNL4B
DHX38
BOD1
UBE2L3
CDK5RAP1
PARP4
SBNO1
QRICH1
MDGA1
MAN2C1
ATP6V1H
CCAR2
MINK1
CNPY2
COPS8
ANAPC5
TTC6
FOXA1
CD63
LIF
SNX16
RBSN
PRKG2
MRPS18A
METTL1
EEF1AKMT3
GABRR1
UTP3
EXOSC5
BCKDHA
PKP2
DDX49
COPE
TIPIN
C6orf226
ZNF26
UPK3B
CCDC43
SMG8
CWC25
LZTS2
SKIV2L
NELFE
CWF19L1
ARHGEF5
MDH1B
FASTKD2
MED30
NUP85
DHRS13
LTO1
RPS9
MAF1
RPS21
MIDEAS
TGIF1
DROSHA
C5orf22
PES1
PEPD
AAR2
PIGO
PRKCSH
CCDC151
C15orf62
LONRF3
S100A6
CCZ1B
SNAP47
JMJD4
PNKD
FOCAD
UBE2M
JADE2
TMEM203
NDOR1
MCM7
AP4M1
TOMM6
BCL3
ZNF384
MAGEA2B
MAGEA2
CEP162
NDUFA4
GPRC5A
COMMD5
WDR46
PFDN6
ARL8B
ISG20
TRMT112
PRDX5
CBWD5
CBWD3
CBWD6
CRLS1
LGALS8
ERCC5
PMEPA1
SRD5A1
NSUN2
NOP16
HIGD2A
ZNF256
TINAGL1
RFXANK
BORCS8-MEF2B
BORCS8
SURF6
RAB5IF
SPRYD4
ATP5MC2
ZG16B
PPIL3
NIF3L1
SSBP1
GFM2
ZNF561
NPAS1
SNRPD2
QPCTL
TGOLN2
ADPGK
EIF3D
ITGB1BP1
CPSF3
ZNF292
PRR19
PAFAH1B3
RNF19A
ZNF302
ZCRB1
PPHLN1
SLC24A1
SNRPC
NCDN
KIAA0319L
XAB2
RNF39
MEGF8
MRPS35
WDR74
EIF3K
LRCH4
FBXO24
COMT
PABPC4L
STOML2
RUSF1
TMEM40
ZNF623
ATP5MG
DHX33
GALK2
COPS2
SKA3
MRPL57
LIN52
ALDH6A1
ALDH18A1
HNRNPA2B1
CBX3
SLC39A10
GET4
WDTC1
EPC2
DDX17
EIF4G2
STRBP
NUDT3
WASHC2A
SLC25A25
NAIF1
GABARAP
SEPTIN7
WASF2
WASHC2C
UBE2Q1
GPR137
CDK4
BAD
GSK3B
RSF1
AAMDC
MSMO1
RPGRIP1L
FTO
DAGLA
MDM2
FAM72D
FAM72C
CUTA
RPUSD4
FAM118B
CLCN7
SMARCD2
USP49
DDX42
CCDC47
SRSF1
ILF3
SERPINI1
PDCD10
COMMD9
GBA
ATP6V1G1
MAN1B1
SLC35A5
ATG3
OSGEP
APEX1
UVRAG
FANCA
MCOLN1
RAD9A
XPO7
NUP214
CLN3
HPS5
GTF2H1
INO80C
FAM72A
AMDHD2
MFSD1
PPP6R1
DVL2
SLC4A2
WWOX
EIF2D
PMS1
ORMDL1
CCDC200
PCIF1
UBE2B
CDKL3
PIP4P1
INTS10
GP1BB
E2F6
ZNF668
WBP2
ARHGAP32
MEMO1
UBE3C
MOB1B
MEF2C
KANSL3
PTBP1
TNC
HNRNPH2
GLA
ITGB3BP
EFCAB7
SEMA3B
KCNMA1
UBAP2L
C1orf43
PASD1
WDR62
THAP8
TPP1
SUMO3
SH3GL1
SLC33A1
THRAP3
CLSTN1
ST7
RPTOR
ANKS6
HM13
SPATC1L
DAZAP1
NDUFS7
MIER1
SUSD4
XRCC5
TBC1D30
GNS
SLK
CACTIN
ADGRB3
FGGY
TMEM116
ERP29
ADGRL1
ALG6
SHLD2
GLUD1
SUMO2
SCAMP5
DICER1
ZNF497
ADAM23
DUSP6
BAX
OTUD7A
TNPO3
KDM3A
NCBP2AS2
NCBP2
PDE4DIP
NOL8
CENPP
TRUB2
COQ4
ARID5B
RMND1
ARMT1
PSMD5
FAM72B
SMARCA4
STX6
ZNF507
PRMT3
RABGAP1L
KDM1A
SYNCRIP
BLOC1S4
RALGDS
NPEPPS
STAU2
STRA6
HDAC6
MYCL
BAG6
APOM
ACVR1B
NEXN
RRAGC
TMEM18
SBK1
SCYL3
PRAME
AP2A2
PPP5D1
NSD1
CALM3
KDM4C
TMEM59
TCEANC2
MYL12A
TFDP1
HOOK2
FEM1A
GRHL1
ZNF33B
HOXC13
PRKCA
LUC7L2
GTF2H4
CAPRIN2
SFXN1
KLHL12
BRPF1
MAN2A2
KDSR
PEAK1
HMG20A
NFU1
KDM7A
NUF2
CENPBD1
NAPA
NSF
RNASEK
SAP30
NVL
BACH2
FLYWCH1
TM2D2
ADAM9
HSPA9
CBX7
RPS11
FBXL3
DIP2A
AFF4
NOTCH2NLC
MINDY2
DNAJB12
JMJD1C
CHD7
WWP1
USP28
FASN
UBE2E2
AIFM1
CACNA2D2
SPTAN1
RFX1
VPS52
RPS18
ETV4
PLEKHF2
FMC1-LUC7L2
FMC1
RCHY1
ABT1
CCDC174
WBP1L
PRPF6
SYT7
SUGCT
MPLKIP
ACTN4
RBPJ
DTNB
PHF21A
FAM222B
CFAP206
CUTC
COX15
C17orf58
RPL5
PRKCE
ZNF609
MSS51
DNPEP
COMMD2
FCHSD2
PTK2
PATZ1
C1QTNF1
MAP3K1
MARCHF2
IKZF2
PHIP
FAM98B
COMMD4
IFT140
CRAMP1
TMEM242
IGF1R
REXO4
OXNAD1
DPH3
KAT6A
LRRC47
ATXN7L2
GOLGA3
RBKS
BABAM2
TRIQK
MRPL21
IGHMBP2
EIF4A2
ZMPSTE24
LASP1
LAMTOR1
UBXN2A
FRMPD1
PXT1
KCTD20
GOSR2
TAOK1
NFASC
KLHL32
CHD1
CD55
CCNI
BSG
PSMA1
FZR1
USF2
CSTF2
TMEM167B
GTF2IRD2
UPF1
CRKL
ATXN7L3
ZBTB18
CHIC2