ChIP-Atlas: Target genes

Potential target genes for HDAC3

Query protein: HDAC3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5457146 | K-562
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
HDAC3's Target genes

◢ HDAC3: Average

◢ SRX5930120: Acute myeloid leukemia

◢ SRX5930121: Acute myeloid leukemia

◢ SRX017705: CD4+ T cells

◢ SRX5457145: K-562

◣ SRX5457146: K-562

◢ SRX8976672: KYSE-410

◢ SRX8976673: KYSE-410

◢ SRX8976674: KYSE-410

◢ SRX8976675: KYSE-410

◢ SRX8976676: KYSE-410

◢ SRX8976677: KYSE-410

◢ SRX8976678: KYSE-410

◢ SRX8976680: KYSE-410

◢ SRX10045306: LNCAP

◢ SRX10045307: LNCAP

◢ SRX3401278: MCF-7

◢ SRX3401281: MCF-7

◢ SRX2140209: MM.1S

◢ SRX5930140: RH-4

◢ SRX5930141: RH-4

◢ SRX059713: VCaP

◢ SRX059714: VCaP

◢ HDAC3: STRING

ALDH18A1
WDTC1
SLC39A10
DDX17
STRBP
EIF4G2
SLC25A25
NAIF1
EPC2
HNRNPA2B1
CBX3
WASF2
SEPTIN7
GABARAP
NUDT3
GSK3B
GPR137
BAD
RSF1
AAMDC
RPGRIP1L
FTO
FAM72D
FAM72C
MSMO1
USP49
SRSF1
DDX42
CCDC47
MAN1B1
SERPINI1
PDCD10
MDM2
DAGLA
SMARCD2
GP1BB
FANCA
XPO7
FAM72A
WBP2
PMS1
ORMDL1
MEMO1
MOB1B
AURKAIP1
WWOX
INO80C
MAN2A2
PPP6R1
NFU1
CAPRIN2
INTS10
TMEM59
TCEANC2
PRAME
FAM72B
DICER1
BACH2
DENR
E2F6
YJU2
AIFM1
ADGRL1
CDK12
CSTF2
KANSL3
ZNF33B
RFX1
CFAP36
PSMD5
TBL1X
CMIP
KIAA1586
MARCHF2
TJP3
TRUB2
COQ4
PI16
HDAC6
TRIM37
CEP43
ARMC8
CTBS
NFE2
NCAPD2
MRPL51
PCIF1
ZNF451
SYT7
NEXN
XRCC5
KDSR
NR4A1
MAP3K1
WDR74
TNPO3
SPINK4
SCN9A
KLHL22
NXT2
GYPE
CENPF
PAXBP1
IL1R1
CAPS2
VWA7
CASS4
KDM3A
GTF3C2
ZNF497
VILL
PLSCR1
ATAD2
BTNL10
LZTR1
CASC3
GBA
EML2
KLLN
ZNF408
ARHGAP1
TCP11L2
PTCD3
POLR1A
CHCHD2
ZNF609
FKBP8
GYPB
P2RX6
HPN
NUP214
RCHY1
TMEM18
RPS11
H4C4
MAD1L1
TSC1
GFI1B
WDR89
CRKL
H4C8
ZNF165
NDUFS7
GNB2
DNAJB2
MAPK14
ILF2
PSIP1
DNAJB12
FBXW11
MBD2
PRDX1
SLFN14
FUT10
CCDC200
GOLGA8B
BAG6
APOM
USP11
PPIL2
AP1G1
SIRT1
PLSCR2
METTL1
EEF1AKMT3
KLHL20
C3orf86
TUBGCP5
BCL6
GTF2H4
ASCC1
ANAPC16
SDE2
FAM83A
PIK3R3
PDE4C
ZDHHC6
VTI1A
SLC35E2A
UFD1
CDC45
SAMD4A
RTBDN
CCNI
RBPJ
ST6GAL1
NOP16
HIGD2A
PRPF38A
ORC1
PXT1
KCTD20
YIF1B
EIF4A2
GDE1
SUPV3L1
TMEM191C
THAP7
SPIDR
WASHC2C
FZD1
POLR2J3
SNRPE
BRWD1
UBE3B
KCTD10
KLHDC9
ATP2C1
BNIP3L
ERCC6L2
TIMM10B
ERMAP
TAF10
ANKFY1
CNKSR3
CLPTM1
NBEAL2
PPOX
SS18L2
SEC22C
GOLM2
LYL1
BRPF1
SOCS2
NDUFS3
KBTBD4
ZNF510
FABP6
CACTIN
RBM39
RAB33B
IL1RL1
TOM1L2
DRC3
TUBE1
FAM229B
TRAPPC9
LSM2
PIH1D2
NKAPD1
ALG14
SEC31A
THAP9
RIPOR3
ZNF74
GP6
QRICH1
PITHD1
UBE2L3
WWP1
PRKCI
REXO4
UBC
RBBP5
VPS52
RPS18
HEPH
UBE2B
CDKL3
SPATA24
ARID1A
DDIT4
TFR2
SLC25A11
RNF167
JMJD1C
SLC35A4
APBB3
TTC12
RTN3
CCDC97
RPA2
VPS13B
GUK1
CSTF2T
ALKBH7
TMEM69
GPBP1L1
FOXJ1
SH2B1
H4C14
ITGB3BP
EFCAB7
KLHL18
KIF9
SF3A3
NOL8
CENPP
INKA2
DDX20
OBSL1
INHA
RNFT1
GABPB2
MRPL11
LPCAT3
UTP18
MBTD1
MAP1LC3B2
C21orf58
PAK1IP1
C6orf52
DGCR8
MARCHF7
WDR83OS
WDR83
FAM53C
CDC25C
CA1
USP3
POLA1
HMBS
TTC26
ATF7-NPFF
ATF7
EGFL7
VAT1
MST1
PTPN12
PDE7A
EZH1
RRN3
C1orf159
BTBD10
IQCH
AAGAB
ATF3
GOLGA3
MED15
PLK3
CCRL2
IREB2
RNF168
RPS26
SLC33A1
EIF1AD
BANF1
PRR5
COQ10B
TBX18
STAT6
TRIM69
TCFL5
SPATC1L
CDC5L
PARK7
TIPRL
ISY1-RAB43
ISY1
HOXB9
MTBP
MRPL13
KCNJ11
SUPT7L
SLC4A1AP
TRMT2A
RANBP1
MRPL54
APBA3
CYB561D1
C9orf16
ECH1
NEU1
C2orf50
H4C3
PPARD
NME1
GDAP1
TXNIP
AQP10
BAZ1B
PRRC2A
SMG7
USP6NL
PSME3
CALM2
VMAC
NDUFA11
ABCF1
TOP3B
HERC1
LMAN2
TPR
ODR4
ATAD3A
RPL11
MYBPHL
GTF2B
METTL25
CCDC59
CCNG2
CFAP20
CRB1
GTF2IRD2
GTF2IRD2B
TRMT10A
MTTP
GAS8
ETFRF1
CFAP94
TRIB1
TRAPPC4
RPS25
ICAM2
TMCO6
S100Z
LRRIQ3
FPGT-TNNI3K
FPGT
ZC3HC1
MRPL40
HIRA
DSTYK
EPS15
DDX41
FDXACB1
C11orf1
TMEM87B
ATG101
NHLRC4
ZCCHC14
SH3BGR
LCA5L
RRP15
MRPL27
EME1
RUNX1T1
YARS2
YARS1
S100PBP
JOSD2
UTP3
TMCC2
MDC1
PPP4R3B
TMC6
IQUB
RHOT1
MYL12A
MRPL48
H2AZ2
DHDH
AP1M1
NCOA4
ATF4
ZBTB45
SSBP1
CEP85L
NR1H3
ACP2
DGCR2
ZNF576
IRGQ
SSBP2
PAFAH2
RGL2
TMEM9
PDAP1
BUD31
H4C11
TRIM6-TRIM34
TRIM6
CTR9
PRPSAP1
TLE2
TAS1R1
NOL9
ETFA
ZNF813
ZNF335
MAPKAPK3
CISH
TRIB3
KDM1A
RCOR3
PHF19
USP9X
TCTEX1D4
BTBD19
HYLS1
GSE1
DKKL1
PPM1D
ARF3
LARS2
IFT172
THEM4
LRRC23
SELENOH
ISG20
FAM156B
FAM156A
NOCT
C19orf25
COX7B
TRMO
NDUFB3
FAM126B
PLS1
TMBIM1
CYTH2
HUS1
PRORP
PPP2R3C
MICOS10-NBL1
MICOS10
USP32
PDCD2L
BRD7
MGRN1
HNRNPH2
GLA
SMG5
BPNT1
C5orf51
GYPA
HNRNPH1
DLAT
KCNAB2
CYP51A1
ZSCAN25
PFDN4
YDJC
PCGF5
KPTN
FUS
RPS9
PPP2R5A
IMPA1
PHF12
NRL
DCAF11
PUS7L
IRAK4
RABEP2
SLC46A3
PRR19
PAFAH1B3
DAB2
CTDSPL2
TRIM5
PSRC1
MTOR
DUSP1
STX6
ZSCAN31
KIF2C
ATG16L2
SLC45A4
TMEM167B
NEK2
ARCN1
MYADM
NUP205
ABHD10
BLVRB
COASY
USP54
CLTCL1
SPRING1
RNFT2
TNFAIP8L1
STARD10
RFC5
CAT
CCNT1
FAM200B
TMEM222
STK40
C16orf46
MDM4
TIMM10
DPY19L4
CDIPT
RFX5
HCFC2
GLT8D2
RIMBP3
HLTF
RPS14
DOHH
ZBTB40
SRFBP1
STXBP4
COX11
KDM5C
GRAP2
TRIP4
PPIH
SDF2L1
OTUD3
KIF23
KAT5
TBC1D30
GNS
ZNF524
FIZ1
DNAJC28
NNMT
NUP155
ZCCHC24
TMEM191B
PNISR
AGBL3
KRT8
KRT18
MAPK1
L3MBTL3
MTIF2
SKIV2L
NELFE
ACSL1
PPIL4
DUSP18
WDR5
CENPN
BMS1
ZMPSTE24
PDXDC1
SLC38A8
PTGES2
MRPS15
ELOVL6
RAD21
IKBKG
TSC22D2
OR52A1
SLC25A37
GAL3ST4
PTMS
NSUN4
SHB
LSR
TMPPE
GLB1
SFSWAP
RBM28
AHCTF1
TRIM28
CCAR2
HEMK1
H2BC18
ZBTB21
SNX24
APRT
COMMD4
COPS4
SETD1A
DCLRE1B
AP4B1
ZKSCAN2
LENG9
ILKAP
YTHDF2
ASXL1
FAM104B
ATP13A3
UBE2I
AHI1
EOLA2
H4C12
NUDCD3
BMF
OCIAD1
DNAJB6
EIF2D
LARP1
DDX39B
TUT1
ETFDH
C4orf46
UNKL
NRSN2
C19orf48
NUMBL
ABHD11
TFPT
PRPF31
ZBTB8OS
RBBP4
GALK2
COPS2
PIGM
TTC39A
TARDBP
SEC22B
GTPBP3
PPP1R37
GSDMD
ZCWPW1
MEPCE
S100A13
CHTOP
DDX18
IPO13
NUDT9
RIOK1
CAGE1
SIRT3
RELA
PSMD13
NUP107
EFTUD2
CCDC103
H4C15
BSDC1
ZDHHC12
WDR73
RPL5
BCAS3
WDR13
NRDC
TMEM37
EIF3F
HNRNPD
YIPF3
POLR1C
DGCR6L
MYL6
MCOLN1
CD55
INTS7
DTL
ICE2
ZNF280A
TMED7-TICAM2
TMED7
ISOC2
ZW10
ALG8
SUMF1
TRMT1
SEC61B
SLX1B
SLX1A
BOLA2B
BOLA2
BOLA2-SMG1P6
ASB6
MRPL44
PPCDC
TGIF1
ZWILCH
RPL4
GPN3
FAM216A
HSPBP1
PSMA1
CAB39
CPQ
WFDC3
DNTTIP1
DAXX
HEXA
EXOSC5
BCKDHA
ZSCAN32
ZNF174
COA6
USE1
SPOCD1
EVI5L
NR6A1
MSTO1
MAP1LC3C
CEP164
THRAP3
LUC7L2
ERGIC2
MRPS28
GCLC
FOXP4
HPS5
GTF2H1
MAIP1
SAYSD1
SLC39A9
ERH
UTP25
NFE2L2
ZFAND3
USP2
ITGB1BP1
CPSF3
CDC20
HSPA9
RBL1
YTHDC1
UBIAD1
FBXO8
CEP44
TOMM6
IGF2BP3
HDAC8
UQCC2
HARBI1
ATG13
CDK11B
CDK11A
DCAF10
NOL11
ZNF391
BRAF
RIPK2
WDR45
UQCC3
LBHD1
MRTO4
EMC1
GPATCH3
PSMC3
C16orf87
WDR55
PTPN4
RPS19
DMXL1
CDCA7
CPPED1
YIF1A
TRIM41
TTC31
CCDC142
NRAS
C21orf91
PRTN3
ATF2
TADA3
ARPC4-TTLL3
ARPC4
PPME1
C2CD3
HAGH
FAHD1
ZZZ3
ZSCAN22
PEX3
ADAT2
STX4
ABCF3
LRIG2
CXXC1
NFYC
DNAH2
CREB3L3
SLC25A45
MED20
BYSL
STAM2
GTF2H2
UMAD1
DRG2
RPSA
OXSR1
SLC25A16
ATXN7L2
TXN
SYS1
GAGE2A
RPL10A
DLD
NAF1
CACFD1
UTP20
DARS1
IFTAP
NCSTN
COPA
KLHDC10
ZNF562
ZNF473
VRK3
POLR2J2
RPL27
CFAP298-TCP10L
CFAP298
FAM207A
SUCLG1
MFAP3L
TIMM44
POC5
PRELID3A
ZNF442
PICALM
FAM86B1
USP30
AAAS
PRMT3
MRPL1
TBL3
NFX1
VARS1
SYCP2L
STRIP1
ARHGEF1
TAL1
RILP
MYO18B
ZNF846
CDK4
TAF6
CNPY4
RC3H2
PTCD1
CPSF4
DDX59
TBX19
RPL23A
ELAPOR2
CCDC124
TMCO1
MRPS18C
HELQ
ANKRD13A
DYNC2I2
AJUBA
BIRC6
FSIP1
SLC26A6
NDUFB2
FBXL13
ARMC10
PEAK1
HMG20A
KMT2D
GRWD1
RTL10
GNB1L
SLC38A2
PDE4A
HDAC5
TMEM128
RMND1
ARMT1
S100A2
DUS3L
NAA38
LRPPRC
VWDE
EHBP1L1
OR8G2P
CYB5D1
CCT5
ATPSCKMT
ERAL1
SPNS1
POLR3B
TMEM39B
TIPIN
RPS2
G0S2
NUF2
YIPF2
TIMM29
RABGEF1
RSPH14
ADNP
HIPK3
FRAT1
RPUSD4
FAM118B
RPS7
RFXANK
BORCS8-MEF2B
BORCS8
DMAP1
ESCO1
KMT5A
INTS4
COL1A1
SYCN
CNOT10
BAK1
TBRG4
PFKM
SENP1
TTC32
SS18
PPP4R3A
CDK9
UQCRC2
RPL7A
MED22
LRRC61
FDX2
ACTR3C
NAPA
AHCYL2
PRPF8
NFKBIL1
ATP6V1G2
RAPGEF3
MRPL42
LAS1L
FAAP20
EXOG
CLDN23
MRPL45
HES1
VPS50
HEPACAM2