ChIP-Atlas: Target genes

Potential target genes for HDAC3

Query protein: HDAC3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX8976680 | KYSE-410
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
HDAC3's Target genes

◢ HDAC3: Average

◢ SRX5930120: Acute myeloid leukemia

◢ SRX5930121: Acute myeloid leukemia

◢ SRX017705: CD4+ T cells

◢ SRX5457145: K-562

◢ SRX5457146: K-562

◢ SRX8976672: KYSE-410

◢ SRX8976673: KYSE-410

◢ SRX8976674: KYSE-410

◢ SRX8976675: KYSE-410

◢ SRX8976676: KYSE-410

◢ SRX8976677: KYSE-410

◢ SRX8976678: KYSE-410

◣ SRX8976680: KYSE-410

◢ SRX10045306: LNCAP

◢ SRX10045307: LNCAP

◢ SRX3401278: MCF-7

◢ SRX3401281: MCF-7

◢ SRX2140209: MM.1S

◢ SRX5930140: RH-4

◢ SRX5930141: RH-4

◢ SRX059713: VCaP

◢ SRX059714: VCaP

◢ HDAC3: STRING

MTRNR2L2
MTRNR2L8
MRPL11
GRB7
TMEM199
POLDIP2
CRBN
GRHL2
UBE3B
KCTD10
ERAL1
SFSWAP
TOMM22
MRPL45
RGPD2
RGPD1
ISY1-RAB43
ISY1
PSMD3
STARD3
POLR2J3
RBM48
PEX1
MTBP
MRPL13
GET3
SLC45A4
RBBP8NL
PGAP3
ERBB2
SUPT6H
SDF2
UNC13D
TSR3
GNPTG
KAT8
STAT6
MTRNR2L9
LZTR1
SLIRP
ALKBH1
POLR2J2
TOP3A
SMCR8
TSFM
SEMA3B
ATP5MF-PTCD1
ATP5MF
SALL4
HEXA
HES1
C1orf174
TET3
SAP30BP
RECQL5
RBBP5
VPS50
HEPACAM2
MOCS3
DPM1
TRIB1
POLR2J
SRI
ZNF335
PDAP1
BUD31
TXN2
DMAC2
UBE2I
DNAJC11
RTF2
GFM1
AXL
MRPS15
NCBP2AS2
NCBP2
MRTO4
EMC1
PSMD1
NEURL2
CTSA
SOCS2
DDX23
UPK3B
MIEN1
RPS26
CCDC97
SMN2
SMN1
YAP1
ZNF830
CCT6B
TJP2
ABCB8
IDH3B
INO80D
LRRC47
C8orf33
BLOC1S1
NAGPA
SLC25A45
LAMP1
CDKAL1
NGDN
MED6
PDCD6IP
SEPTIN9
LRRC46
SLC35B1
SNRPE
TBRG4
ZZZ3
MAP3K7
RPL23A
PALB2
DCTN5
TAS1R1
NOL9
PPWD1
CENPK
CENPBD1
SUPT4H1
LRRC29
DDX46
EIF3H
ZSCAN25
PRPF6
THAP7
ELP3
RPTOR
TRMT2A
RANBP1
SUPT7L
SLC4A1AP
ZNF165
ZNF383
PHAX
SPNS1
STX16
C16orf91
WASHC5
NSMCE2
ATG14
BHLHE40
PFKM
SENP1
PSME3
ZNF408
ARHGAP1
SLC25A53
SUMF1
NDUFA2
IK
KRR1
DIABLO
LAMTOR1
POLR3F
DZANK1
C5orf51
MAN2C1
FUT1
LTO1
CD55
PFDN1
REXO1
ZFYVE26
HAGH
FAHD1
CLPTM1
PSMG2
CEP76
NDUFA9
AKAP3
VPS52
RPS18
ZNF576
IRGQ
KMT5B
GABRR1
XAB2
RAE1
PEPD
GSN
NEMF
MRPL58
NOM1
UBQLN1
NDUFA4
SART3
ISCU
ZCCHC10
NVL
COLEC12
NR1H2
TRMT1
ZNF2
TMEM203
NDOR1
CCDC124
NOC2L
RCE1
METTL2A
CASC3
NOP16
HIGD2A
TRUB2
COQ4
LRFN4
ZG16B
NOL10
DDX41
ZCCHC4
RWDD1
TIMM22
APOBEC3H
GPATCH3
NOL8
CENPP
TRMO
TATDN3
NSL1
PSMB7
SUPV3L1
U2SURP
TRAF4
ZGPAT
ARFRP1
VIRMA
GATB
STYXL1
MDH2
GPRC5A
MAIP1
PRR3
GNL1
NXT2
ZSCAN22
DOHH
CBLL1
CASP8
CPSF1
THUMPD1
LRATD2
BIRC3
BRWD1
TFPT
PRPF31
ZNF507
DPP3
MB
SENP5
VAC14
EVPLL
PRSS22
SART1
FASTK
ZDHHC6
VTI1A
FAM83A
MRPS7
GGA3
BRPF1
PTP4A1
TCTEX1D4
BTBD19
TBL1X
DNAJC30
BUD23
OXNAD1
DPH3
TOMM6
PCYT1A
METTL25
CCDC59
HEMK1
TBC1D15
VPS33A
NUP214
TSN
GCN1
VGLL4
GTPBP4
KMT2A
HUS1
CLCN7
GTF2IRD2
CDK12
EXOSC5
BCKDHA
NCAPH2
LMF2
SEC61B
WDR24
CNPY2
HTRA2
NHP2
TNPO3
LANCL2
EIF2S1
ATP6V1D
ABT1
COLEC11
SETD3
CCNK
LCN2
BABAM1
EIF2D
PMPCB
ZNF212
DOK7
CCNT1
INTS1
SLPI
PSMC3
EPS8
RTEL1
TBL3
IL1RN
SURF2
SURF1
TIMM50
SEMA5B
MRPS11
MRPL46
PNO1
RIN1
ATF3
TMEM40
NDUFB5
MRPL47
MAF1
AP5Z1
TXNL4B
DHX38
TMEM258
FEN1
RCOR3
FUBP3
LIMA1
TIMM23
MED23
ALKBH3
MRPL38
P3H4
FKBP10
RNF207
ZNF668
MRPL21
IGHMBP2
PIK3C2B
ZNF646
SYBU
BMS1
NFKBIA
BIRC2
MDH1B
FASTKD2
UQCRQ
GDF9
NOL11
FLOT2
TAGLN2
KRT17
UBE2M
NOP58
OST4
GFM2
TCERG1
SNRNP200
SNIP1
ZNF524
FIZ1
ATG101
CLDN22
SMPD4
MZT2B
DGAT2
ORAI3
SKIL
YJU2
DHRS3
DNAJB12
FAM222B
KLK6
MAD2L1BP
DDX19A
RASEF
ZNF544
KMT5C
TIMM23B
PARG
RAD51AP1
C12orf4
NUP107
COMMD2
GOSR2
FOXS1
STK19
DXO
CACTIN
SMG8
FOS
PPP1R37
PISD
CDKN2AIPNL
AMDHD2
MAGOH
E2F4
TFAP2C
COX16
DNAH5
SF3B3
COG4
RPL26L1
WDR53
FBXO45
THOC1
GTF2IRD2B
EFTUD2
CCDC103
FANCD2
PDRG1
MDM4
TMEM41A
ICE1
SUGCT
MPLKIP
SCAF11
ADPRS
SMG7
RPS9
LEKR1
VPS11
OAZ3
SLC7A6OS
PRMT7
SLC30A6
PES1
SRD5A1
NSUN2
GID8
DIDO1
PPIL4
SLC39A9
ERH
RICTOR
SF3A3
MTIF2
SRP19
ECH1
SEC13
FBXW2
RBPJ
PIKFYVE
METTL2B
SMIM12
NMNAT1
LZIC
PUS10
PEX13
FEM1A
RBSN
ATP6V1G1
EIF4H
TP53I3
CDK11B
CDK11A
DUS2
DDX28
PLEKHG6
GAR1
FSCN1
SSNA1
ANAPC2
CZIB
LENG8
SRP68
EIF1AD
BANF1
DUSP6
MRPL53
ATP6V1H
FADD
MORF4L1
DHRS13
CYP1B1
PROSER1
NHLRC3
EIF2B2
MRPL1
GTF2H3
EIF2B1
RNPS1
VPS28
NUDT5
CDC123
ZNF256
BAG6
APOM
RUSF1
CBWD5
CBWD3
CWC25
TRIM4
PRKAG1
ALDH18A1
HNRNPA2B1
CBX3
SLC39A10
GET4
WDTC1
EPC2
DDX17
EIF4G2
STRBP
NUDT3
WASHC2A
SLC25A25
NAIF1
GABARAP
SEPTIN7
KAT5
WASF2
WASHC2C
UBE2Q1
GPR137
CDK4
BAD
GSK3B
ATP6V0D1
RSF1
AAMDC
MSMO1
RPGRIP1L
FTO
DAGLA
MDM2
FAM72D
FAM72C
CUTA
RPUSD4
FAM118B
SMARCD2
USP49
DDX42
CCDC47
SRSF1
ILF3
MTHFR
CLCN6
SERPINI1
PDCD10
COMMD9
GBA
MAN1B1
SLC35A5
ATG3
OSGEP
APEX1
UVRAG
FANCA
AURKAIP1
GOLM2
MCOLN1
RAD9A
XPO7
WDR74
NME1
CLN3
HPS5
GTF2H1
PAXBP1
INO80C
FAM72A
CEP162
MFSD1
PPP6R1
DVL2
SLC4A2
FLOT1
ZBTB45
WWOX
ATAD2
PMS1
ORMDL1
CCDC200
SLC25A11
RNF167
PCIF1
UBE2B
CDKL3
PIP4P1
INTS10
GP1BB
E2F6
WBP2
SSBP1
ARHGAP32
MEMO1
UBE3C
MOB1B
MEF2C
RRP15
KANSL3
PTBP1
TRIP4
TNC
HNRNPH2
GLA
ITGB3BP
EFCAB7
KCNMA1
UBAP2L
C1orf43
PASD1
USP30
WDR62
THAP8
TPP1
SUMO3
SH3GL1
SLC33A1
THRAP3
CLSTN1
EIF5A2
ST7
DHX35
ANKS6
HM13
SPATC1L
DAZAP1
NDUFS7
MIER1
SUSD4
XRCC5
TBC1D30
GNS
SLK
ADGRB3
DENR
LPCAT3
VWA7
FGGY
TMEM116
ERP29
ADGRL1
ALG6
SHLD2
GLUD1
SUMO2
NUDCD3
AAAS
SCAMP5
LSG1
DICER1
ZNF497
ADAM23
PLAGL1
BAX
OTUD7A
FAIM
KDM3A
PDE4DIP
LMAN2
RXRA
SH2B1
ARID5B
RMND1
ARMT1
EIF3F
PSMD5
REEP4
FAM72B
SMARCA4
METTL1
EEF1AKMT3
SPHK2
RPL18
STX6
NDUFAB1
KRT80
PRMT3
RABGAP1L
QRICH1
SERP1
KDM1A
EIF2A
SYNCRIP
BLOC1S4
RALGDS
NPEPPS
ATP6V1C1
STAU2
STRA6
HDAC6
MYCL
ACVR1B
NEXN
RRAGC
TMEM18
SBK1
LARP1
SCYL3
PRAME
AP2A2
PPP5D1
NSD1
CALM3
KDM4C
TTC32
RBM39
TMEM59
TCEANC2
MYL12A
TFDP1
HOOK2
CHMP7
UBE2L3
GRHL1
ZNF33B
HOXC13
PRKCA
LUC7L2
GTF2H4
CAPRIN2
SFXN1
KLHL12
MAN2A2
KDSR
PEAK1
HMG20A
NFU1
KDM7A
NUF2
NAPA
NSF
BNIP1
RNASEK
LRRC23
SAP30
BACH2
FLYWCH1
TM2D2
ADAM9
HSPA9
CBX7
RPS11
FBXL3
DIP2A
AFF4
NOTCH2NLC
MINDY2
RPS14
JMJD1C
CHD7
CSTF1
AURKA
WWP1
USP28
FASN
UBE2E2
AIFM1
SLC24A1
CACNA2D2
SPTAN1
HSPBP1
RAB3IP
S100A2
FAM133B
RFX1
ETV4
PLEKHF2
FMC1-LUC7L2
FMC1
COPS7B
RCHY1
CCDC174
WBP1L
GTF3C5
SYT7
ACTN4
TSC1
GFI1B
TTC31
CCDC142
BRIX1
DTNB
PHB2
PHF21A
CFAP206
KMT2D
URM1
CUTC
COX15
SNX16
C17orf58
UTP3
RPL5
PRKCE
ZNF609
MSS51
COASY
ZNF17
ZNF3
DNPEP
FAM162A
CCDC58
FCHSD2
PTK2
PATZ1
C1QTNF1
MAP3K1
MARCHF2
CCAR2
IKZF2
PHIP
FAM98B
COMMD4
ZC3HC1
MINK1
IFT140
CRAMP1
TMEM242
IGF1R
REXO4
KAT6A
PTPN12
ATXN7L2
GOLGA3
RBKS
BABAM2
TRIQK
EIF4A2
ZMPSTE24
LASP1
UBXN2A
FRMPD1
PXT1
KCTD20
TAOK1
NFASC
KLHL32
CHD1
NDUFB3
FAM126B
CCNI
BSG
PSMA1
FZR1
MAPKAPK5
USF2
CSTF2
TARS2
TMEM167B
UPF1
CRKL
ATXN7L3
ZBTB18
ERGIC2
CHIC2
MED1
OPA1
CHRM3
OAZ1
ADCY9
ZNF292
TIPARP
PKP2
PTPRG
LYPLAL1
CMIP
TEFM
OBSL1
IRF2BP2
INHA
SPRTN
EXOC8
ELAPOR2
PPP2R5A
LCOR
EFNA3
BHLHB9
SLX4IP
SGO1
KLHL22
NOTCH2NLB
NOTCH2NLA
LYPLA1
CFAP36
CABIN1
ERCC6L2
MELK
ZBTB14
TM9SF4
ARMC8
ZNF217
CCDC88A
VILL
SRSF11
AUTS2
RBM14-RBM4
RBM14
PVALEF
AATK
ALG14
C12orf66
SYT12
MED20
BYSL
MAZ
GTF2A1
GFER
AMOTL1
GAB2
GSDMD
HERC5
RPL7L1
RPS12
IQCG
CHEK1
COMMD8
NFE2
MCM7
MAST2
AP4M1
MRFAP1
GNB1
SRSF6
SGTA
PKNOX1
SREK1IP1
RYK
CWC27
ELP5
CTDNEP1
TENT2
PDE12
CTBP1
YTHDF2
STAT5B
LIFR
PTBP3
MRPL27
EME1
MRPS33
MLLT10
SPPL3
C19orf48
THAP1
NDUFS3
KBTBD4
RBM19
MAPKAPK3
COPS4
TPD52L2
BRF2
CACYBP
TJP3
RBM28
MRPL48
SSBP2
UBXN4
PHF3
ZRANB2
GRWD1
SLC35A4
APBB3
SYT1
PARD6B
TRAPPC2L
GALNS
TOR1AIP1
ZNF451
GLCCI1
MTF2
PNKD
PLSCR1
SMURF1
MRPL40
HIRA
CBX6
BBS1
C3orf70
FEZ1
CAPS2
KIAA1586
NEK6
POMZP3
PIK3R3
ATOH7
ARPC2
IPO11
FUT10
NR4A1
C20orf141
ADARB1
PWP2
LRRC40
LOC102724159
RUVBL1