ChIP-Atlas: Target genes

Potential target genes for HDAC3

Query protein: HDAC3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10045306 | LNCAP
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
HDAC3's Target genes

◢ HDAC3: Average

◢ SRX5930120: Acute myeloid leukemia

◢ SRX5930121: Acute myeloid leukemia

◢ SRX017705: CD4+ T cells

◢ SRX5457145: K-562

◢ SRX5457146: K-562

◢ SRX8976672: KYSE-410

◢ SRX8976673: KYSE-410

◢ SRX8976674: KYSE-410

◢ SRX8976675: KYSE-410

◢ SRX8976676: KYSE-410

◢ SRX8976677: KYSE-410

◢ SRX8976678: KYSE-410

◢ SRX8976680: KYSE-410

◣ SRX10045306: LNCAP

◢ SRX10045307: LNCAP

◢ SRX3401278: MCF-7

◢ SRX3401281: MCF-7

◢ SRX2140209: MM.1S

◢ SRX5930140: RH-4

◢ SRX5930141: RH-4

◢ SRX059713: VCaP

◢ SRX059714: VCaP

◢ HDAC3: STRING

GET4
CDK4
UBE2Q1
HEXA
AP5Z1
KAT5
CUTA
WASHC2A
ILF3
RPUSD4
FAM118B
ATP6V0D1
LAMP1
UVRAG
OSGEP
APEX1
WASHC2C
MTHFR
CLCN6
DVL2
MCOLN1
MFSD1
SLC35A5
ATG3
WDR62
THAP8
RAD9A
ATP6V1G1
PIP4P1
TMEM116
ERP29
HAGH
FAHD1
CLCN7
GBA
COMMD9
TPP1
HPS5
GTF2H1
HOOK2
UBE2B
CDKL3
AFF4
SPNS1
TBC1D30
GNS
SPPL3
THRAP3
TRAPPC2L
GALNS
BHLHB9
RNASEK
SGTA
CLN3
FAM174C
NEURL2
CTSA
COMMD8
AMDHD2
GTPBP6
HOXC13
SGO1
SLC33A1
ATP6V1C1
TRMO
HNRNPH2
ATP6V0B
UBAP2L
C1orf43
LAMTOR1
KDM4C
SERF2
CEP162
GTF2A1
VPS33A
KLHL12
RRAGB
STX4
BAX
CREBRF
NPTN
LZTFL1
DUS3L
SPG21
ADNP2
SHPK
CTNS
RRAGC
RMND1
ARMT1
PLD3
C19orf47
UBN1
GLYR1
IQCG
LMLN
SLC38A7
PRDX6
FNIP1
VPS11
ZNF292
NAPA
CTDP1
SUPV3L1
SPATC1L
SUMF1
PRPSAP2
BLOC1S1
TBRG4
ATP6V1E1
NAGPA
TOP3A
SMCR8
TMEM248
ATP6V1H
SLC35B2
C5orf51
RPL5
HNRNPA2B1
CBX3
ZNF507
WBP2
TIMM22
TOGARAM1
KLHL28
G6PC3
NUF2
RAP2A
DNAJC13
TSSC4
MYDGF
YJU2
CCDC174
ATXN3
MORC2
POLR3B
DNPEP
PIK3R3
UBAP2
MARCHF8
ARFGEF2
CCDC59
PRMT3
NOL8
CENPP
NME1-NME2
NME1
COMMD4
DPP9
ATP5MC2
GNB2
WASHC5
NSMCE2
CACYBP
NR1D1
NUP214
EFTUD2
CCDC103
KHDRBS1
VCPIP1
C8orf44-SGK3
STX6
ATP6V0E1
TMEM258
FEN1
EIF2S1
ATP6V1D
POLG
USPL1
HMGB1
ANKRD12
SCAMP3
HSPBAP1
TBL3
MMACHC
CCDC163
SF3A3
NDUFS7
ADCK1
SLC35A4
APBB3
CPEB4
UTP11
NEU1
PSMC4
TOR1AIP1
PBRM1
GNL3
TMEM259
ARRDC4
ITFG2
EEF1A1
GABARAP
FEM1A
FRMPD1
SLC36A1
THNSL1
SOD2
WTAP
EMC2
UROS
BCCIP
RPS27
MRPL24
MSL2
NUDCD3
SCYL3
MRPL27
EME1
PDE12
MRPL48
QTRT1
ZSCAN22
MYL12A
LEMD3
UBE2J2
CACUL1
ATG4C
KANSL2
CYCS
SHC1
CKS1B
MIS18BP1
RPL27
S100A13
CHTOP
TOM1
PTBP1
ZNF56
AP3S2
ANKHD1-EIF4EBP3
ANKHD1
RFESD
TIPARP
CCNL1
CDIP1
CCNT1
VPS26A
LRRC56
CCNYL1
RBBP5
LAMTOR5
CRNKL1
CFAP61
CEP350
H4C15
H4C14
NUFIP2
CHMP7
MED11
ZZZ3
SNRPE
LONP1
CATSPERD
SLX1B
SLX1A
BOLA2B
BOLA2
BOLA2-SMG1P6
SARS2
MRPS12
TSNAX
CREBL2
MRPL3
SNRPA
C19orf54
MRPS23
BORCS7
MSMP
MRPL55
PARL
ZNF687
TRAPPC8
DUS2
DDX28
GTF2H2C
GTF2H2
CASC3
MTF2
STAT3
THAP5
DNAJB9
ITGB3BP
EFCAB7
CHD3
PAXBP1
GABPB2
THOC3
DFFA
ZMPSTE24
DNAJA3
MVK
RABL3
PIK3C2A
GTF2E1
ATAD2
CAND1
SF3B5
MTRNR2L8
B3GALNT2
ACAD9
RC3H2
CKS2
RBM6
CFAP251
CXXC1
BUB3
RPS26
CSTF2T
N6AMT1
SIKE1
RNMT
FAM210A
GTF3C4
DDX31
RNF43
LSR
GTF2H2C_2
SRSF3
TIMM17A
FITM2
ZNF672
GLMP
PDAP1
BUD31
JMJD1C
HACD2
C8orf37
GID4
ATPAF2
DUSP12
SRSF1
PRPF6
IFT43
CDK7
TNPO2
CSNK1G3
CTSL
INTS7
DTL
DHDDS
MLEC
TM9SF4
BUB1B
DNAJC25-GNG10
DNAJC25
MTIF3
CCDC124
ZBTB40
LTA4H
PPRC1
TCP11L1
SLC25A53
CACTIN
FDXACB1
C11orf1
GDAP1
TDG
HDGFL2
BCLAF1
SKAP2
GORAB
ZNF140
IFT57
U2SURP
CSTF1
AURKA
C12orf66
CEP63
ANAPC13
MTFR2
GABPA
ATP5PF
DOHH
SLC25A32
DCAF13
ATG5
NSG2
NUP153
VPS50
HEPACAM2
HSPA5
SEC11A
ASH1L
ZNF850
C11orf65
HPS1
GFM1
CLSTN1
KIF15
KIAA1143
RORC
USP30
THAP6
GSTA4
NAT10
RPLP2
CD164
BCAR3
ERRFI1
ZNF565
ZNF146
SELENOH
FNTB
COX14
SGF29
NCL
HNRNPC
AURKAIP1
RPL38
DRG1
ASNS
NUP107
RPL22L1
EPRS1
TMEM170A
ZNF408
ARHGAP1
PPP4R3A
OXSR1
NPM1
ARMC5
BANP
KEAP1
DCAF8
DOP1B
COPS7A
HDAC6
ZFYVE26
RPS29
GRN
EXO1
HDAC2
WWOX
TRUB2
COQ4
PCNX4
AHCYL1
ZFYVE19
DNAJC17
RNF224
ORC2
L3HYPDH
JKAMP
AKAP9
BMS1
TMBIM6
NOL7
ZNF714
CFAP43
ADAT1
WDR55
TTC14
GPHN
ZNF682
BOLA1
AAAS
UTP23
CUL5
TAMM41
DNMT1
WDR13
RAB18
DAZAP2
SF3A2
PLEKHJ1
PRC1
DENND4A
TBC1D32
LUC7L2
FMC1-LUC7L2
FMC1
MRPS21
LPCAT3
EIF1AD
BANF1
RPS11
CHD1
HSPA9
WDR89
RIOK3
DNM2
RPS14
RPL37
EXOSC3
IQCH
AAGAB
CZIB
PSMC5
FTSJ3
PRRG2
NOSIP
NTMT1
WDR4
MZF1
KTI12
GOLGB1
PRKCSH
CCDC151
MRPS18B
SLC3A2
HOXB7
TRIP4
SRCAP
LOC730183
PRKCI
BCL9
IPO13
TOMM20
UBE4A
CIART
GTPBP4
PLEC
KHSRP
SMARCAL1
PIGO
CCT2
RTTN
TTBK2
SMIM15
C5orf49
POLR2J3
BAG6
SIRT4
PDCD11
ATP5MD
ITGB1
IP6K1
ASCL5
UTP3
KMT5C
SETD3
CCNK
DYRK1B
C10orf88
PSMD9
HPD
TAF13
MFSD4B
RETREG2
CNPPD1
ZNF77
TBC1D22A
SCAF11
TAF12
POC1B-GALNT4
GUK1
ESCO1
WDR5B
NPRL2
CYB561D2
TFPT
PRPF31
PSME3
USP28
SYS1
KIFC1
ZSCAN32
ZNF174
PPT1
PDCD6
ELP3
IPO11
ZAR1L
BRCA2
RSRC1
PPP2R1A
PCNX3
ESD
RBM48
PEX1
C19orf48
IFRD1
PRCC
TOMM70
LNP1
PARP2
ZNF219
IGIP
SMIM10L1
PRH1-TAS2R14
C17orf97
PDGFB
TPM3
TMEM80
DEAF1
STX16
CBWD5
STT3B
EIF1
TM2D1
AK2
ANAPC10
ABCE1
JUP
GLRX5
ZNF165
RAD51AP1
C12orf4
ZNF497
DCP1A
TMF1
RPS13
SLC25A46
SEC23B
CDK20
BLOC1S6
SLC35B1
SSBP1
DSTYK
H2AZ2
VMAC
NDUFA11
THG1L
USP54
RB1CC1
FDPS
RPS3
CWC25
TOM1L2
DRC3
RNPS1
MRPS31
CFAP20
RBMXL1
KYAT3
INTS9
HMBOX1
PNPLA6
SEPTIN2
HDLBP
CLN6
OSBPL8
FTSJ1
EIF4G2
RRP15
MRPL21
IGHMBP2
ULK4
MRPS33
MCCC1
SP2
FUS
IFT172
NUDT15
GINS3
DDX21
ZBTB3
EIF4A3
NUTM1
NOP10
TCAIM
L2HGDH
DMAC2L
SLC39A10
LZTR1
FAM227B
DTWD1
POT1
ZSWIM3
ACOT8
HTR5A
ZNF622
NCBP2AS2
NCBP2
COPS4
SRSF11
CSDE1
WDR36
PRORP
PPP2R3C
FAM53C
CDC25C
PSMD6
NFX1
TADA1
ARF4
ACBD6
COA6
PCCB
TRAF6
RAG1
SLC30A5
NAA25
STK19
DXO
LOC389831
HMGCR
POLR3G
MBLAC2
ANKRD46
PSMD3
SMN2
SMN1
PMVK
ARL4A
POLR1B
SACM1L
CTH
CCDC30
ZSCAN25
GOSR2
GNL2
QTRT2
CCDC191
PRPF38B
RALBP1
VCP
SLC25A13
RBM4
EIF4A1
ZBTB45
SLC25A26
TMEM87A
GANC
CIPC
NEDD4L
RAB5A
EFHB
SRPRB
OGA
SNX17
EIF2B4
PDCD6IP
UMAD1
ICE2
SRSF7
ZNF561
DDX19A
RAB30
TRAPPC12
MBD4
IFT122
TMEM167B
ATF7-NPFF
ATF7
RPL35A
SLC39A6
SMIM20
RBM18
MRRF
KRTAP5-7
KRTAP12-2
DCTN4
ACSL1
SKA3
MRPL57
ARIH1
TAF9
RAD17
AK6
GTPBP10
MFAP1
THOC1
RRN3
RGS3
AATF
FBXL19
MRPS18C
HELQ
NFYC
TRA2B
DELE1
PNP
ABT1
ALG14
TBC1D17
AKT1S1
ZNF529
UBFD1
EARS2
TMEM230
SHF
TTC23L
RPS5
GOPC
TCTN3
RASSF1
DPP8
PPP2R3B
EIF2B3
LRIG2
STXBP4
COX11
RPLP0
ARL6
ZNF335
NDUFA4
FZR1
OPA1
DNAJC19
ABCF1
NACA
DDX11
ADK
LRP2BP
ANKRD37
ZNF829
ZNF568
SMIM4
PTRHD1
CENPO
MYG1
RCCD1
RPS6
RSU1
HSPA13
THAP7
LANCL2
PPOX
TBC1D19
EIF3D
USP1
RMI1
HNRNPK
HAUS5
SEC11C
CNOT1
RTEL1
DDX18
NRL
DCAF11
BCAS3
ALG1
TSACC
CCT3
ABCA3
GSPT1
SFPQ
TTC4
PPP3CA
KBTBD6
TRAPPC3
MPDU1
LOC100996842
ZNF383
VAC14
NOP16
HIGD2A
DNTTIP2
SCNM1
LYSMD1
TSNAXIP1
RANBP10
TMEM144
NUDCD2
HMMR
AGFG2
TNPO3
PES1
SRSF6
PHF12
DGLUCY
RBL1
RPS6KA5
NADK
ZNF791
ZNF490
ERAL1
TMEM208
LRRC29
RAB5B
MMADHC
MAP2K7
TUT1
RAMAC
MED28
STOML2
RPGRIP1L
FTO
QRICH1
CCDC107
KLHL18
KIF9
WARS2
PGK1
CLTC
ACTR1A
NFATC2IP
SBDS
ZNF300
WDHD1
SOCS4
SUPT7L
SLC4A1AP
STYXL1
GTF2H4
CHCHD2
CCDC146
TRAPPC4
RPS25
TATDN3
NSL1
NUP42
FAM214A
TRMT112
PRDX5
TGOLN2
DMTF1
VIPAS39
AHSA1
RNF121
LOC100133315
LAPTM4A
DPAGT1
TMEM183A
TOR3A
MLF2
SEPTIN7
METTL1
EEF1AKMT3
HERC5
TRMT61B
AHCTF1
DNAJC28
PTPN4
EIF3B
NECAP1
RBM14-RBM4
RBM14
ALKBH3
EMC4
RPS20
TBC1D23
COPB2
PDE4DIP
SURF6
KIF22
ZNF286A
STXBP3
STAT2
ZNF585A
LYSMD3
KIF20A
BRD8
TMEM59
DIABLO
SEC61B
ALG2
GALK2
COPS2
DMXL1
WDR48
SCN11A
FBXL12
H4C2
NPAT
ATM
NLGN1
AIP
RECQL
GOLT1B
CALR3
C19orf44
SFSWAP
ECH1
BNIP1
VEZT
FGD6
DCAF10
ERLIN2
ZBTB6
SRRT
PRPSAP1
CCDC90B
INTS4
UFSP2
FAM71E1
EMC10
OSBP
RPAIN
NUP88
ZNF613
AGTRAP
SMG7
COX16
ATXN7L2
XAB2
INKA2
DDX20
SREBF1
RAB10
ISG20
CCDC12
TARS1
G3BP1
SYVN1
RNF6
SNAPC5
KHDC4
ZNF184
SH3BP5L
COX8A
CNPY2
NOL12
ATP5MC1
HSPH1
CDK19
ASNSD1
ASDURF