ChIP-Atlas: Target genes

Potential target genes for HDAC3

Query protein: HDAC3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5930141 | RH-4
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
HDAC3's Target genes

◢ HDAC3: Average

◢ SRX5930120: Acute myeloid leukemia

◢ SRX5930121: Acute myeloid leukemia

◢ SRX017705: CD4+ T cells

◢ SRX5457145: K-562

◢ SRX5457146: K-562

◢ SRX8976672: KYSE-410

◢ SRX8976673: KYSE-410

◢ SRX8976674: KYSE-410

◢ SRX8976675: KYSE-410

◢ SRX8976676: KYSE-410

◢ SRX8976677: KYSE-410

◢ SRX8976678: KYSE-410

◢ SRX8976680: KYSE-410

◢ SRX10045306: LNCAP

◢ SRX10045307: LNCAP

◢ SRX3401278: MCF-7

◢ SRX3401281: MCF-7

◢ SRX2140209: MM.1S

◢ SRX5930140: RH-4

◣ SRX5930141: RH-4

◢ SRX059713: VCaP

◢ SRX059714: VCaP

◢ HDAC3: STRING

WASHC2A
HEXA
LAMP1
AP5Z1
KCNMA1
NEURL2
CTSA
TNC
WASHC2C
STRA6
ARID5B
GET4
SUMF1
KAT5
ZNF668
CLCN7
COMMD9
WBP1L
CLN3
C1QTNF1
RMND1
ARMT1
MSS51
RRAGC
PVALEF
AATK
TRMO
SEMA3D
MTHFR
CLCN6
MTRNR2L2
MYOG
FHL2
VPS33A
AMDHD2
NAGPA
ZNF507
DOK7
SLC35A5
ATG3
HAGH
FAHD1
FSCN1
ETV4
C20orf141
MTRNR2L8
SPNS1
SULF1
TBL1X
SYNPO2L
MEF2D
BAX
HNRNPH2
IFNAR2
ATP6V0D1
CLIP1
CEP162
TBC1D1
UBE2Q1
MXRA7
CDK4
HRCT1
TNNT1
CCN2
INO80C
MYBPC2
TMEM167B
FREM1
GPSM1
ACOT9
MCOLN1
ABLIM1
AFAP1
BLOC1S1
CREB5
CDCA7L
NR4A1
CHD3
CNN3
OPRD1
HHIPL2
ABHD2
HES1
MFSD1
DGLUCY
HOXC13
LFNG
SERTAD2
RYR1
EYA1
HNRNPD
TRIM62
ATP13A5
HPS5
GTF2H1
VPS11
ETS1
KDM1A
MINDY2
HERC5
GUCA2A
FAM110A
INTS12
GSTCD
AMOTL2
SMARCD2
SMYD1
TRIM55
ZNF609
CCNI
POLR2M
SBK2
TXLNB
SCN3B
CITED2
YBX3
ZAR1L
BRCA2
DUSP5
TBC1D9
SPATC1L
ATP6V1C1
KAZN
MAST4
OSGEP
APEX1
WASHC5
NSMCE2
BLCAP
GRN
KDM3A
PGS1
HMX3
TBC1D19
TNNT2
COMMD4
ZBTB18
PPP1R3D
FAM217B
MNAT1
INTS10
KCNF1
DUSP6
NCAM1
RIN2
ITGB3BP
EFCAB7
SLC4A2
CDK5
DYSF
ATP6V1H
SNRPB2
KDSR
ZNF32
CXXC5
CUTA
MRPL44
S100A2
ARID5A
TCEAL7
LACTBL1
ARID1A
ATP6V1G1
SSX2IP
TCF4
PIP4P1
FAM240C
MSMO1
SUPT7L
SLC4A1AP
LTBP1
CAPS2
RAD9A
KANSL3
FUT10
MYL4
USPL1
HMGB1
SSTR5
INMT
CFLAR
EPHA3
KLHL12
C2orf49
VASH2
TXNIP
MTF2
PEX3
ADAT2
RBM28
GFRA1
RGS3
LIMCH1
METTL7B
GTF2B
PROSER1
NHLRC3
MARCHF8
PSMD3
KANSL1
MAPK10
SSBP1
NAV2
STYXL2
MYLK2
ZNF292
RPUSD4
FAM118B
VPS50
HEPACAM2
NDUFA4
SLC25A34
PELO
ITGA1
CCNG2
SELENOH
ICE2
TPP1
TBC1D30
GNS
ELOVL6
PTPRD
COLEC12
MRPS23
SHB
SH2D3C
EFNA1
OSBPL7
ANKRD12
SUGCT
MPLKIP
MUSTN1
ILF3
CHMP2B
RCBTB1
MDM2
IRF2BPL
DES
RBPJ
CALM2
TACR3
HMGCS1
CRBN
RNASEK
IPP
MTRF1L
IRF9
SMAD3
MC2R
HES6
PPP6R1
E2F6
FOSB
ECH1
INKA2
DDX20
SYTL3
ALLC
PAFAH2
TBPL1
NAGLU
NAA38
STMN1
RASGRP3
SH3BP4
PLEKHD1
PMEPA1
ZBTB40
MYLK4
THOC1
ACHE
BHLHE40
NOXO1
AZIN1
CDC42EP3
VGLL3
TSR3
GNPTG
C5orf51
SSBP2
PTK6
COMMD2
COPS4
CGGBP1
C3orf38
AMPD3
ARHGAP24
SRSF7
PDE4DIP
ATP8A1
UTP18
MBTD1
RBSN
ARFGEF2
WWOX
PSIP1
CDK5RAP1
G6PC3
MAMSTR
TTC9
PKM
UVRAG
ZNF217
AASDH
NUP107
FZD1
BCAT1
METTL9
ANKRD1
HIF3A
OTUD7B
CTHRC1
TOR1AIP1
LZTS2
PELATON
BEST3
RPS7
VTA1
NMBR
SREBF1
SHPK
CTNS
STING1
TSPAN33
TRIL
DVL2
SH2B1
SLC24A1
INTS14
NFE2L2
CHRNA1
GTF2A1
MAP3K7CL
KDM4C
MTFR2
APP
GRAMD4
ARSG
RPL27
TTC26
USP15
RBMXL1
KYAT3
SYT7
YARS1
S100PBP
RTN2
HSPB7
SAV1
MADD
NACA
RARB
SYNRG
NDUFV2
TRIM72
ELAC2
PFDN4
NBPF1
PUM3
RPS12
NRAS
ACVR1
SPATA9
RHOBTB3
DYRK1B
KYAT1
FSD2
USP30
BRF2
DUSP10
WBP4
ELF1
ANKRD40
TNFRSF19
SLF2
COX16
RAB5B
UGGT1
NEBL
MTBP
MRPL13
ST7
NUF2
WDR11
TMEM100
IMPACT
IL21R
CPA1
NEXN
AAAS
CCDC107
TNNC2
ZNF335
POMZP3
MRPS31
NOTCH2
GSPT1
ZBTB26
RAMP1
CAV3
ARL14EP
THAP10
LRRC49
MCM6
DEPTOR
TSFM
MYL12A
TM9SF4
PRR5
DRG2
DNAJC25-GNG10
DNAJC25
LRRC17
ZNF654
PRR5-ARHGAP8
MRPL34
NME1-NME2
NME1
KAT6A
RTTN
IKBKG
KIAA0895
ANLN
ZNF572
CCDC88A
ATP6V0B
LOC389831
KDM8
ATP2A1
RARA
JMJD1C
GOSR2
MTERF1
ZSCAN30
STAT3
NKIRAS1
NR1D2
RGMB
FLOT1
ZCCHC4
PRKAG2
KLF7
GPRC5A
MSL2
MYO18A
ASB18
HRC
NFIB
TMEM242
SNRPB
THAP5
DNAJB9
STX16
MEMO1
MAST2
TEFM
HDAC9
SYTL2
PBK
RHOJ
GBA
ARMC8
CDK6
FAM185A
AIFM1
KLHL32
NDUFAF4
TOP3A
SMCR8
SETD3
CCNK
INO80B
AP3S2
MMADHC
VPS13B
NAPA
RPL5
ATR
TNFRSF12A
WDR75
SH2D7
PLEKHM3
PLSCR1
CBLL1
SF3A3
CDON
PIKFYVE
RBL1
MPHOSPH10
MCEE
DCLRE1B
AP4B1
TBL1XR1
SEMA6A
MTHFD2L
CASZ1
RPN2
PALLD
MROH8
AXL
SLC33A1
PNKD
ZCCHC3
PCNX4
EPM2A
RCAN1
ARHGEF6
PSMB7
PTK2
LAMTOR1
MTMR14
TERF1
RUSC2
CLK1
LRRC58
PGM5
BET1
COMMD8
DMAP1
NPEPL1
VMP1
PTRH2
PDZRN3
PRDX6
POLDIP3
DDX1
PCOTH
MIPEP
NSUN4
KCTD9
CDCA2
FITM1
POLR1F
H2AZ1
PLAAT5
COL12A1
ELAPOR2
RFC1
ATF3
TTI1
RPRD1B
TMBIM4
SLC25A32
DCAF13
ARL8B
LEFTY1
THRAP3
FOS
USP37
CNOT9
SULF2
MFAP4
IRAK1BP1
EIF2B3
HELB
NLK
MTREX
DHX29
KIAA1522
AIG1
PLS1
CRNKL1
CFAP61
KLHDC10
GTF2H2C
GTF2H2C_2
WDR36
HBS1L
TRIB3
SDHD
SGIP1
SLC1A4
RBM24
LRTM1
BDKRB2
ACSL3
OBSL1
INHA
HSPBAP1
OSBPL9
MRPS5
CALD1
EML2
FAM200B
ID1
MFAP3L
ZC3H15
XKR7
USP47
CXCL3
LRIG3
NKAP
IARS1
TRIM32
BMPER
ASTN2
SERPINI1
PDCD10
PAXBP1
CSTF1
AURKA
TUBE1
FAM229B
DDX18
STX5
APBA1
GRPEL2
GBE1
SVIL
SECISBP2L
KRTAP4-1
HOMER3
CTBP2
CAP2
STX18
HIBCH
DCTN1
MEGF10
SLC30A6
METTL3
UBE2B
CDKL3
NDUFB5
MRPL47
C12orf66
PALB2
DCTN5
UBXN4
ARNT
TGFBR2
RAB18
HMGCR
PDCD11
ATP5MD
FAM200A
DENND2A
NPAS4
UBC
SDHAF3
SS18
RPS6
PDSS2
PLS3
ZMIZ1
SLC51B
DOCK7
CSRP1
MAPKAPK3
CISH
POLE4
YTHDC1
RPL11
CCDC7
PGM1
DPH5
TRAM1
PIGL
PHACTR2
ECHDC1
CYP2U1
CACNA2D4
MRPS15
PIH1D2
NKAPD1
ZCCHC24
ITGB1
RXYLT1
ZNF790
CCSER1
PSME3
CCDC174
STK36
RNF25
UBE2D3
CCNC
DAB2
FLRT3
MED28
IMPDH1
TPM2
NOTCH2NLA
VPS45
NYNRIN
NOTCH2NLB
OXNAD1
DPH3
ERGIC2
TAMM41
CLDN12
ZSWIM7
WASHC4
TTC19
STRIP2
GRWD1
PPCDC
RUNX1T1
CHRNG
TAOK3
NUB1
NT5C3A
SEPTIN9
KRT80
AAR2
N4BP2L2
NUDT9
PIGC
MCL1
TRDMT1
RTCA
PMAIP1
SLC26A11
SGSH
CNOT2
NFIA
RNF6
RBMS1
PTDSS1
MTERF3
HECA
AMOTL1
ATF6
MED18
CBWD5
PRKAB2
CHD1L
TCTE3
ERMARD
SLC38A2
ZSCAN9
HIPK1
ZNF780B
EIF2S2
ZMAT1
PXDNL
MMAA
LOC100996750
KRTAP4-7
ZNF484
ZNF397
C21orf91
IST1
CLUAP1
POLR3F
DZANK1
SRI
MYL12B
ETAA1
AHI1
RTN4
GNG11
POGLUT3
ACTR3
CAMK2D
CACYBP
SEC31A
THAP9
NUP42
NCSTN
COPA
HIKESHI
SIKE1
ZCWPW2
AZI2
NANP
IGFBP5
ACOT11
NDUFS7
BRD4
PNISR
FERMT3
CPED1
ZNF407
SETBP1
PYURF
PIGY
PELI2
NFATC2
HERC3
CLASP1
SP2
C10orf88
PEF1
SASS6
ZNF155
STX17
PRR29
AURKAIP1
FGGY
SETDB1
ATF7-NPFF
ATF7
SLC36A1
RIOK3
RAB30
MTX2
ATP5F1E
DTNA
ANGEL1
SP9
NXPE3
RAB3IP
DENND2B
C8orf37
TIMM10
HBP1
VIPAS39
AHSA1
TOMM34
RAD18
STK17B
SPRYD7
RECK
PTPN21
NFXL1
MAN1A2
ADGRL1
MRPS18C
HELQ
DCTN6
B3GALT5
UTP25
POLR1B
VCPIP1
C8orf44-SGK3
ZNHIT6
ANKRD53
ZSWIM3
ACOT8
GCLM
RFC3
PIPOX
DUSP3
SKIL
NUFIP2
MORC2
SUCLG1
KRTAP5-3
TP53RK
RPL9
LIAS
UQCRB
DR1
ZBED5
TPRA1
SCFD1
MPG
CNOT4
ARHGAP29
HUS1
THAP6
H2AZ2
TYW3
CRYZ
STT3A
BRAF
WDFY2
TNK2
CDC25B
CCDC138
TAGLN3
SHISA2
SH3BP2
KCNH8
DSTYK
RRN3
CCDC146
EMC2
DARS1
TACO1
CEP120
ALG10B
CTNNB1
METTL18
C1orf112
CWF19L2
OSBP
UFM1
BLOC1S5
ZBTB38
TMEM106B
MEGF9
FBXO10
FAM186A
CCDC102B
ANKRD65
DNAJB2
CAND1
SS18L2
SEC22C
CCDC171
GPR39
SNX5
NFATC4
MGME1
BCAP29
SOCS2
ROCK2
TBCK
AIMP1
CBWD3
CBWD6
SLC25A26
POT1
SF3B5
SEMA3C
SF3B6
FAM228B
CSNK1G3
JUN
ERLIN1
FRS2
SDCBP
SQLE
RBBP8
IMMP1L
ELP4
POLR2J3
PSMA1
THAP1
ARHGEF12
MDM4
NUCKS1
POMP
TPK1
TRMT6
MCM8
ODF2L
RPL31
CDC7
SEPTIN2
HDLBP
VPS25
VPS72
PEX2
POLR3D
SLC35A1
MYCBP2
SLC25A36
FBXO48
APLF
RHOBTB1
PLCXD2
KLHL40
ETV1
RPL37
AHCYL1
THUMPD3
ANO6
FUCA2
TOM1
ADNP
MRPS10
ADGRL2
CHCHD3
MED13
MAPK1IP1L
EIF2D
CD55
NAPEPLD
ARHGAP28
C12orf73
CCDC15
CLTC
SKAP2
ICAM2
RPL23
SELENOI
PHTF1
NAA16
MTRF1
CEP41
ADGRF3
YAP1
CCNT1
TNPO3
BIRC2
GSN
UBB
TTC21B
TMEM64
SRP19
RPF1
CMSS1
ING3
STARD3NL
IDNK
CFL2
BZW1
U2SURP
NUDCD3
SGO1
POLR3B
RPL21
EXOSC3
C17orf75
RPL15
ZNF684
SLC44A1
ALK
ZSWIM4