ChIP-Atlas: Target genes

Potential target genes for HDAC3

Query protein: HDAC3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX8976673 | KYSE-410
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
HDAC3's Target genes

◢ HDAC3: Average

◢ SRX5930120: Acute myeloid leukemia

◢ SRX5930121: Acute myeloid leukemia

◢ SRX017705: CD4+ T cells

◢ SRX5457145: K-562

◢ SRX5457146: K-562

◢ SRX8976672: KYSE-410

◣ SRX8976673: KYSE-410

◢ SRX8976674: KYSE-410

◢ SRX8976675: KYSE-410

◢ SRX8976676: KYSE-410

◢ SRX8976677: KYSE-410

◢ SRX8976678: KYSE-410

◢ SRX8976680: KYSE-410

◢ SRX10045306: LNCAP

◢ SRX10045307: LNCAP

◢ SRX3401278: MCF-7

◢ SRX3401281: MCF-7

◢ SRX2140209: MM.1S

◢ SRX5930140: RH-4

◢ SRX5930141: RH-4

◢ SRX059713: VCaP

◢ SRX059714: VCaP

◢ HDAC3: STRING

MTRNR2L8
MTRNR2L2
TMEM199
POLDIP2
GRB7
ERAL1
SLC45A4
MRPL45
C8orf33
SFSWAP
UBE3B
RGPD2
RGPD1
RBBP8NL
POLR2J3
CRBN
POLR3F
DZANK1
CLPTM1
C1orf174
PSMD3
BHLHE40
VIRMA
MIEN1
GRHL2
TSR3
GNPTG
PSMB7
SLC35B1
LAMP1
PGAP3
ERBB2
RBM48
PEX1
ZNF383
ATF3
UNC13D
STARD3
LZTR1
POLR2J
TJP2
TFPT
PRPF31
HES1
MTRNR2L9
MTBP
MRPL13
C16orf91
ISY1-RAB43
ISY1
UBQLN1
DMAC2
POLR2J2
SLIRP
ALKBH1
RRP15
HAGH
FAHD1
RAB3IP
MRPS11
MRPL46
RBBP5
VAC14
RAD51AP1
C12orf4
SKIL
STAT6
IDH3B
SMN2
SMN1
THAP7
NDUFA2
IK
NDUFB3
FAM126B
TET3
SOCS2
ITFG2
PHAX
GATB
HEXA
FLOT2
TOMM22
TRMT1
UBE2I
MRTO4
EMC1
YAP1
LPCAT3
STX16
TSFM
U2SURP
SALL4
SAP30BP
RECQL5
SUPT6H
SDF2
MOCS3
DPM1
RPS26
VPS50
HEPACAM2
SLC25A53
ZNF576
IRGQ
ELP3
SMG7
NAGPA
TBRG4
PCNP
KRT80
NDUFAB1
TRMO
SUPT7L
SLC4A1AP
TRIB1
ZSCAN25
METTL2A
SUMF1
MFSD3
NEURL2
CTSA
LMAN2
DDX46
ZBTB45
DNAJC11
KAT5
SNRPE
CDKAL1
FAIM
PFKM
SENP1
C19orf48
ATP5MF-PTCD1
ATP5MF
STYXL1
EIF3H
SLC25A45
TTI1
RPRD1B
CCDC59
TAS1R1
NOL9
TRAF4
TBL1X
ATG14
REEP4
MTO1
ZNF17
ASB6
COLEC11
BRF2
GET3
SERP1
EIF2A
TTC31
CCDC142
BRIX1
ZSCAN22
PPWD1
CENPK
DDX23
DIABLO
HEMK1
METTL2B
SUPV3L1
CCDC97
ATG101
RAE1
UPK3BL1
BNIP1
CHMP7
TFAP2C
POLR1H
ATAD2
ZNF3
LSG1
VPS33A
SRI
RTF2
TRIP4
PSME3
ZGPAT
ARFRP1
SYT12
TOP3A
SMCR8
CASC3
NME1-NME2
NME1
ZNF165
HUS1
DDX41
EIF3F
MAPKAPK5
SH2B1
TIMM22
TUFM
ZNF524
FIZ1
RCE1
ZZZ3
BMS1
MED20
BYSL
DLC1
DOK7
FAM133B
GRK7
BIRC3
LARP1
TXN2
EIF5A2
PHF3
S100A2
PSMD1
DPP3
GTPBP4
AXL
GTF3C5
TIMM50
RBM42
ABCB8
UPK3BL2
ECH1
RTEL1
GCN1
FIS1
STX6
TBL3
MED6
TBL1XR1
ZNF830
CCT6B
ATP6V0D1
ZC3HC1
ZRANB2
VPS37A
CNOT7
MIEF1
KRR1
MRPL1
KCTD11
WASHC5
NSMCE2
EIF1AD
BANF1
POMZP3
CDK5RAP2
YJU2
ZNF408
ARHGAP1
ZNF2
TIPARP
TBC1D17
AKT1S1
SPHK2
RPL18
COX16
ZCWPW1
MEPCE
TRMT2A
RANBP1
TTC32
SSNA1
ANAPC2
USP30
SEPTIN9
VPS11
NFKBIA
MTX1
THBS3
PRR3
GNL1
PSMG2
CEP76
PDCD6IP
LRRC23
CHRM3
GFM1
LANCL2
GPATCH3
RXRA
ATP6V1C1
COPS7B
UTP20
TJAP1
PBX2
DDX11
BIRC2
PDAP1
BUD31
ZDHHC6
VTI1A
SLX4IP
PPP1R37
GLCCI1
COASY
FCF1
AREL1
ZFP64
CDK12
EVPLL
RPL26L1
NUS1
EIF3E
UQCRQ
GDF9
KAT8
RPS12
ZNF579
NGDN
CDK11A
TSR1
NUP214
TSN
MRPS7
GGA3
FSCN1
MED4
ASH2L
PNO1
EXOC5
AP5M1
ZNF335
PUS10
PEX13
SART3
ISCU
MED23
AURKAIP1
CCNT1
RPS14
RPL23A
COG2
PMPCA
ENTR1
MTHFR
CLCN6
DGAT2
SF3B3
COG4
PGGT1B
DNAH5
SEC13
LSM5
ERLIN2
RASEF
PHF5A
ACO2
TMEM101
TMEM208
LRRC29
YIPF3
POLR1C
GRWD1
PLAGL1
URM1
GTF2H3
EIF2B1
ERGIC2
KMT5C
DNTTIP2
GJB7
NVL
HSPBP1
RRNAD1
ISG20L2
SPNS1
OAZ3
MRPL9
DNAJC30
BUD23
ANXA3
KRT17
MUL1
NUDCD3
MAP3K7
SF3A3
LRFN4
NDUFB5
MRPL47
RWDD1
ALKBH3
HR
MRPL48
KPTN
NOC2L
ZFPL1
CDCA5
PRSS22
RBM19
OPA1
PNMT
MACROD1
BLOC1S1
FOS
WDR53
FBXO45
FAM162A
CCDC58
SKIDA1
ACP3
PRKG2
PARL
C5orf51
DHRS3
PHB2
NDRG1
SEMA3B
MRPL10
LRRC46
NDUFA9
AKAP3
MED1
IPO11
TNFRSF12A
SEMA4B
WASHC1
SNRPB2
HCAR2
INTS1
FOXA2
MRPS15
FAM83A
PFDN1
TRIM29
ZNF16
LIMA1
TCERG1
SETD3
CCNK
UBXN1
ZCCHC4
MB
GSN
ADPRS
PCID2
CUL4A
NDUFA10
PPFIBP2
MRPL55
VWA7
MAPK14
SETD1A
DRG2
MRPS34
EME2
MYL12B
ZMAT2
UTP3
KMT2D
PIK3C2B
RINT1
SNRPB
MAGEF1
QRICH1
TSC1
GFI1B
MRPL40
HIRA
LMNA
CDC5L
CTTN
MRPS26
TAGLN2
CDC23
TTC6
FOXA1
VASP
FLOT1
EPS8
MTIF2
PSMC3
MRPS22
SEMA6A
CSTF1
AURKA
GTF3C3
AP5Z1
PAXBP1
PTP4A1
CLPB
TMPRSS4
NUP107
TAF6
CNPY4
NUP85
ING5
SREK1IP1
CWC27
SEC61B
ALG2
MBD6
FADD
TMEM41A
CNPY2
DDX49
COPE
SRP68
TIMM9
KIAA0586
MORF4L1
TXNL4B
DHX38
PDE12
CDK5RAP1
LIF
ADAR
XPO4
DENR
MAN2C1
PTPN12
DUS2
DDX28
GUCA2A
ANAPC5
PPP5C
DHRS13
SYT1
TRIM4
ATP6V1H
ELAPOR2
TIPIN
NUDT5
CDC123
NR1H2
PIGO
STK36
RNF25
TOMM6
CCDC43
LONRF3
MAF1
PARP4
UPK3B
CWC25
FASTKD2
OGG1
SLC25A11
RNF167
METTL1
EEF1AKMT3
SMG8
MCM7
AP4M1
CCZ1B
JADE2
MRPL58
SRD5A1
TMEM203
NDOR1
EXOSC5
BCKDHA
PEPD
PNKD
TGIF1
C15orf62
C6orf226
NDUFA4
NFX1
SKIV2L
NELFE
GPRC5A
TPD52L2
LZTS2
TGOLN2
PKP2
ITGB1BP1
CPSF3
COPS8
LTO1
UBE2L3
PPIL3
NIF3L1
SNRPD2
QPCTL
S100A6
ME1
DROSHA
C5orf22
SNRPC
BCL3
ERCC5
SURF6
CWF19L1
GABRR1
ISG20
RPS21
PES1
PRR19
PAFAH1B3
ZNF384
PMEPA1
TRMT112
PRDX5
COMMD5
RAB5IF
ZNF561
CD63
ADPGK
MTMR14
MRPL12
XAB2
SLC24A1
INTS14
TINAGL1
SPRYD4
SSBP1
RNF19A
NPAS1
UBE2M
ZCRB1
PPHLN1
WDR46
PFDN6
ANKRD22
RUSF1
PABPC4L
LRCH4
FBXO24
MEGF8
MBNL2
SKA3
MRPL57
ALDH18A1
HNRNPA2B1
CBX3
GET4
SLC39A10
EPC2
WDTC1
DDX17
EIF4G2
NUDT3
STRBP
SLC25A25
NAIF1
GABARAP
SEPTIN7
WASHC2A
WASF2
WASHC2C
UBE2Q1
GPR137
BAD
CDK4
GSK3B
RSF1
AAMDC
MSMO1
RPGRIP1L
FTO
DAGLA
MDM2
CUTA
CLCN7
SMARCD2
USP49
DDX42
CCDC47
SRSF1
RPUSD4
FAM118B
GBA
ILF3
SERPINI1
PDCD10
COMMD9
MAN1B1
ATP6V1G1
FAM72C
SRGAP2B
FAM72D
OSGEP
APEX1
SLC35A5
ATG3
UVRAG
MCOLN1
FANCA
RAD9A
SRGAP2
FAM72A
XPO7
CLN3
HPS5
GTF2H1
INO80C
MFSD1
PPP6R1
SLC4A2
DVL2
PCIF1
CEP162
UBE3C
AMDHD2
EIF2D
ARHGAP32
WWOX
PMS1
ORMDL1
MEF2C
MEMO1
PTBP1
UBE2B
CDKL3
PIP4P1
CLSTN1
ZNF668
GP1BB
INTS10
SH3GL1
SUMO3
WBP2
E2F6
ANKS6
UBAP2L
C1orf43
ADGRB3
MOB1B
MIER1
DAZAP1
SHLD2
GLUD1
HNRNPH2
SUSD4
ST7
TNC
KANSL3
SLK
SRGAP2C
KCNMA1
FAM72B
FGGY
SUMO2
TPP1
ALG6
HM13
SCAMP5
WDR62
THAP8
OTUD7A
THRAP3
XRCC5
SLC33A1
ADAM23
SPATC1L
RPTOR
TBC1D30
GNS
SMARCA4
TMEM116
ERP29
ADGRL1
ITGB3BP
EFCAB7
CACTIN
STAU2
RABGAP1L
RALGDS
BLOC1S4
PPP5D1
CALM3
MYCL
PRMT3
ACVR1B
DICER1
BAX
DUSP6
ZNF497
SBK1
NSD1
KDM3A
TRUB2
COQ4
NPEPPS
SCYL3
RMND1
ARMT1
ARID5B
NCBP2AS2
NCBP2
PSMD5
TNPO3
KDM1A
AP2A2
KDM7A
TFDP1
NOL8
CENPP
GRHL1
FLYWCH1
TMEM18
NOP16
HIGD2A
PEAK1
HMG20A
HDAC6
CBX7
STRA6
SAP30
PRKCA
NEXN
DIP2A
UBE2E2
BAG6
SFXN1
RRAGC
KDM4C
FASN
NDUFS7
SPTAN1
PRAME
RPS11
LUC7L2
TMEM59
SYNCRIP
TM2D2
ADAM9
NUF2
HOOK2
CHD7
ZNF507
TMEM40
BRPF1
PLEKHF2
HOXC13
MINDY2
FBXL3
DNPEP
CAPRIN2
C17orf58
MAN2A2
CHIC2
CACNA2D2
NFU1
USP28
PHF21A
MYL12A
ACTN4
KDSR
WWP1
AAAS
RNASEK
FEM1A
BACH2
FMC1-LUC7L2
FMC1
PATZ1
JMJD1C
CFAP206
NAPA
IKZF2
AIFM1
KMT5B
DTNB
CENPBD1
MAZ
IGF1R
KLHL12
USF2
RFX1
SYT7
CUTC
COX15
THAP6
GTF2H4
PHIP
PRKCE
WBP1L
DPP8
ATXN7L3
FAM222B
EIF2S1
ATP6V1D
ADCY9
VPS52
RPS18
UBXN2A
PRPF6
CHD1
LASP1
VGLL4
ETV4
PTK2
ATXN7L2
RBPJ
MSS51
PXT1
KCTD20
FCHSD2
AFF4
RPL5
COMMD2
CABIN1
IFT140
CRAMP1
NFASC
CCDC174
SPRTN
EXOC8
IRF2BP2
BSG
MAP3K1
EFNA3
HSPA9
MARCHF2
C1QTNF1
COMMD4
RBKS
BABAM2
PSMA1
FRMPD1
EIF4A2
LYPLA1
FAM98B
DNAJB12
ABT1
OAZ1
FZR1
TAOK1
GOLGA3
MAPKAPK3
KLHL32
GFER
SCAF11
UPF1
GOSR2
ZMPSTE24
PTPRG
ZBTB14
LRRC47
MRPL21
IGHMBP2
LAMTOR1
CTBP1
TRIQK
LCOR
OXNAD1
DPH3
TMEM242
CCNI
REXO4
TMEM167B
ZNF217
CSTF2
MELK
MAST2
LYPLAL1
GAB2
CCDC88A
AP3S2
CBX6
CD55
CCAR2
SUGCT
MPLKIP
ZNF609
KAT6A
PTBP3
ZBTB18
MLLT10
NDUFS3
KBTBD4
MRFAP1
REXO1
PMPCB
SPPL3
NSA2
GFM2
CMIP
EIF4H
OBSL1
INHA
PKNOX1
SGO1
WDR74
PTP4A3
AUTS2
ARMC8
PTCD3
POLR1A
CFAP36
TEFM
C12orf66
SEMA5B
LIFR
COPS4
RBM14-RBM4
RBM14
GNB1
BHLHB9
PPP2R5A
PVALEF
AATK
ERCC6L2
ULK4
THAP1
HERC5