ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX236483 | ES cells
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◣ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Tcstv3
Kpna1
Txndc11
Hexb
Greb1
Brox
Aida
Il31ra
Cldn34d
Olfr1274
Fbxw4
Vmn2r102
Gtf3c6
Aldh9a1
Gm10710
Dchs2
Rsph3b
Sspn
Dnah7b
E030030I06Rik
Eapp
Ube2j2
H2bc4
H2ac6
Drg2
Dcp1a
Cd209a
Taf12
Gmeb1
Smim17
BC107364
Arl4d
Col6a6
Sfi1
Eif4enif1
Csf2ra
H1f3
H3c6
H2bc8
H2ac8
Abhd6
LOC666331
Gm11634
Olfr806
Mrpl39
Ap1g1
Tti2
Tex14
Sirt4
Aadacl2fm1
Pknox1
Kif2c
Nkx2-6
Setd4
Cbr1
H2bc6
H4c4
H3c4
H2bc7
H2ac7
Sytl3
Ifna13
Wwox
Txnip
H4c6
H4c14
H3c13
H2bc18
Slc14a2
Uba2
Cerk
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
Fcgr4
H4c9
H2bc12
H2bc11
H2ac12
H2ac11
Rbm17
H3c8
H2ac10
H4c8
Lrrc2
Dnttip2
Cacng2
Rdm1
Tal2
Tmem107
Agk
Atp6v1h
Mymx
Slc29a1
Fyco1
Xcr1
Alyref2
Tmem270
Ninl
Cldn13
Dpagt1
Hmbs
H2ax
Armc5
9130023H24Rik
Mrpl44
Sema4b
Smim12
Ethe1
Zfp143
H3c3
H2bc3
H1f2
Scnn1g
Mrpl1
Smg8
Hdhd3
Esr1
Tmem54
Hpca
Ccdc83
Mcl1
Ndufs7
Atp5g1
Pus1
Ep400
Trp53rkb
H3c15
H3c14
H2ac19
H2ac18
Ndufc2
Ptges2
Mybpc3
Mybl2
Ints12
Gstcd
Raf1
Cryzl2
Rsph3a
Dmap1
Pafah2
Cox8b
Ndufaf5
Esf1
Jph2
Ap3s2
Irgc1
Rbpj
Hsd17b11
Rnf125
Gm5820
Npas4
Fbxo9
Cilk1
Cryaa
Wwp1
Eif4e2
Chrng
Cuedc1
Rps19bp1
Atf4
Sf3a3
Tph2
Spp1
Ints10
H4c3
H1f6
Med23
Klhl20
Cd37
Utp3
Spats1
Nme1
Ntn5
Megf8
Apela
Nuf2
Tnrc6b
Pipox
Grhpr
Plpp3
Gdf3
Apobec1
Ints1
Cltc
Eif4b
Mtf2
Trmt44
Acox3
Gorasp2
Rab33b
Oasl1
Ndufs3
Kbtbd4
Zfp609
Alpk3
Ppil3
Nif3l1
Cfap100
Slc39a4
Cpsf1
Sntb2
Fam149b
Ecd
Trpv4
Ppp1r10
Mrps18b
Atat1
H4c11
Irak2
Lrrc59
Eipr1
Palb2
Dctn5
Dhx8
Gm3776
Mrpl21
Ighmbp2
Poldip3
Scrib
Nsa2
Gfm2
Rer1
Morn1
C2cd5
Gins3
Scarf1
Rilp
H3c7
H2bc9
Sit1
Ccdc107
Bcl2l1
Tpm1
Opa1
Ubd
Psrc1
Olfr95
Olfr94
H3f3c
Ndufaf1
Tnks1bp1
Snrpe
Rbm34
Vps28
Ppid
Carns1
Dhx16
Ncam1
Cep85
Sde2
Thumpd3
Tdg
1190007I07Rik
Syt5
Slc33a1
Rint1
Pus7
Sox2
Tmem211
Jam2
Adnp
Ptpn6
Grcc10
Mtg1
Ripor2
H3c2
H2ac4
Mettl25
Ccdc59
Tm7sf2
Zfpl1
Vps51
Tmem262
Cdca5
Ppp2r5c
Ube2q1
Chrnb2
Sec24d
Tafa5
Dhx30
Kcnk9
H4c2
Mlf2
Cacnb3
Chgb
Mrps21
Ube2l3
Rimbp3
Etl4
Zyg11a
Rubcn
Fyttd1
Gbx1
Trap1
Trp53rka
Hrh2
Aaas
Kdm6b
Rabggtb
Msh4
Snrpc
Eps15l1
Ppp1r11
Znrd1as
Znrd1
Gpatch8
Rnf39
Capns1
H4c12
H2bc15
H2ac15
Cdkn2aipnl
Atg16l1
Tubg1
Retreg3
Zfp13
Gna15
Tecpr1
Wdr92
Pno1
Vmn2r72
Rprml
Lyzl6
Crhr2
Wdr36
Dop1b
Tex19.1
H3c10
H2bc13
H2ac13
H2bc14
Tmem101
Hmgxb4
Cdiptos
Cdipt
Atp5k
Zbtb37
Ttc14
Edc4
Ttc25
Stx18
Ubxn2a
Atad2b
Sost
Arid5b
Mterf1b
Gjc1
Rptor
Cipc
Zfp638
Cdk5rap1
Dus1l
Ybey
Mcm3ap
Mrps18c
Helq
Mex3a
2410137M14Rik
Atp6v0d1
Agrp
Mrps28
Pou5f1
Polr2j
Ncf2
Mtcl1
Surf6
Rpl7a
Med22
Usp30
Svop
Psmg3
Slc39a3
Rfng
Gps1
Pigc
4930558K02Rik
Kcnh2
Nos3
Chn2
Ndufb8
Hif1an
Sec31b
Ctdsp1
Trir
Tnpo2
Get3
Dync1h1
Pstk
2310057M21Rik
Cbfa2t2
Ttc39d
Srsf7
Ints5
Ganab
1810009A15Rik
Lbhd1
Det1
Trmu
Tacr2
Ndufa9
Akap3
Dus2
Ddx28
Tmed4
Ddx56
Ddx55
Top1mt
Golga7b
Hoxb9
Zmym1
Stat1
Tekt2
Adprhl2
Nol10
Fam169a
Tkfc
Ddb1
Lrp6
Cdc16
Mrps15
Lypla1
Otx2
Hsd11b2
Ubc
Morf4l1
Plxdc1
Cbx7
Chd8
Etnk2
Ren2
Ren1
Ctdsp2
Gstt2
Josd2
Aspdh
Sppl2c
Zcwpw2
Azi2
Arf4
Arhgef12
Cln6
Aqp8
Pik3r2
Mpv17l2
Ifi30
Osbpl1a
Yipf2
Timm29
Sphk2
Spaca4
Rpl18
Fam83e
Zfp532
Gramd4
Faim
Tmem95
Kctd11
Rgs9
Olfr90
Ppp1ccb
Ppp1cc
Sec22b
Cast
Tas1r3
Ints11
Cptp
Pou2f2
Crym
Abca14
Snx18
Ttc4
Prrg2
Nosip
Lefty1
Twistnb
Pigm
Ccdc88a
Pex3
Adat2
Tor1b
Rac3
Pttg1ip
Lrrc45
Cenpx
Ncs1
Dcxr
Naa35
Cntn2
Znfx1
Lima1
Socs3
Tsfm
Med31
4930563E22Rik
Dusp12
Slc35f6
Nynrin
Triml2
Rab3b
Fbxl22
Ooep
Ddx43
H4c17
Mrpl45
Tbcd
Ppard
Celf2
Psmd3
Rps19
Pcdh20
Zfp131
Tmem222
Rrm1
Hgfac
Cd79a
Npy5r
Npy1r
Abca3
Abca17
Srp68
Galr2
Ppan
Angptl6
Tchp
Dcaf11
Necap1
Rapgef1
Shfl
Slc15a1
Chordc1
Trim28
Pofut2
Dffb
Cep104
Man2b2
Ciao3
Zbtb45
Syt3
1700008O03Rik
Eps8l1
Def6
Ift46
Arcn1
Rad54l2
Gpr19
Rpl27
Ifi35
Taco1
Natd1
Nol8
Cenpp
Spry1
Satb1
Nup54
Bms1
Sod2
Xrcc5
Tgm1
Rabggta
Fam220a
Comtd1
A430057M04Rik
Stard10
Atg16l2
Rsc1a1
Kbtbd6
Fes
Ephb1
H4f16
H2aj
Paxip1
Zfp598
Npw
Tmed9
B4galt7
Thap11
Nutf2
Cenpt
Zfpm1
Zfp113
Cops6
Gps2
Eif5a
Ccdc174
Git1
Ankrd13b
Pvr
Hoxb13
Kctd5
Fitm2
Galk2
Cops2
Anapc5
Faf1
Cdkn2c
Htt
Ints4
Rbm28
Nceh1
Gstm7
Gstm6
Chrna1
Bpifb9b
Car5a
Banp
Lag3
Trip4
Pclaf
Ropn1l
Pomt1
Tmem221
Slc27a1
Nxnl1
Sgca
Senp3
Tnfsf13
Tnfsfm13
Tnfsf12
Mical1
Qrich2
Wdr18
Pck1
L1td1
Cobl
Tob2
Rpl5
Pigu
Dhx33
Gatad2b
Tars2
Gne
Zscan22
Fbxo22
Slc36a1
Armc7
Cdk15
Ube2s
Hemk1
6430571L13Rik
Mterf4
Ung
Alkbh2
Zfp57
Rimklb
H2-M5
Gm3448
Gm3417
9030025P20Rik
Usp4
Gpx1
Epn1
Mrps33
Txn2
Sema3b
Fam177a2
Fam177a
Ankrd35
Tmem242
Eif2b3
Sfrp4
Lsg1
Tmem191c
Lhfpl5
Hsd3b4
Gm4450
Setd5
Dync1i2
Slc9a1
Gabpb2
Stx16
Fndc3b
Mnat1
Abcc4
B4galt3
Trem2
Pirt
Mc5r
Kpna7
Gjb3
Dapp1
Piezo1
Mrpl35
Immt
Sdad1
Phactr4
Acp6
Smim8
Crocc
Zfp710
Tdgf1
Nanog
Epp13
Ccdc110
Bfsp1
Zfp791
Snrpd1
Esco1
Zc3hc1
Dennd6b
Zranb1
Fntb
Med4
Hint3
Mfng
Nfatc4
Dcaf5
Med27
Ulk1
Dnajc11
Psd
Fbxl15
Gnai2
Pspn
Clpp
Alkbh7
Sec13
Wdr24
Stub1
Jmjd8
A930018P22Rik
Mtmr6
Cpsf4l
Atp1b2
Uqcrc1
Errfi1
Rab1a
Ssbp1
Zscan25
Kbtbd7
Atg101
Zbtb34
Rbp7
Nat8f4
Alpl
1700001P01Rik
Ing1
Cars2
Cwc25
Timm50
Jtb
Cdk20
Gp1bb
Septin3
Gm5544
Hspa8
Rnf216
Vps18
Pde6d
Cops7b
Mdm4
Tomm7
Gcnt2
Gstm1
Tex46
Kdm1a
Spata24
Prob1
Pnmal2
Pnmal1
Grtp1
H4c1
H3c1
H1f1
Dpy19l4
Phf2
Ints3
Ccar1
Cnot10
Zbtb40
Myo18a
Tk1
Afmid
Nudt13
Sec24a
Sar1b
Get1
Nr1h3
Acp2
Mphosph10
Mcee
Ddx20
Eif3g
Smim26
Dtd1
Flnb
Sptbn1
Sppl2a
Htra2
Dqx1
Snw1
Vpreb1
Top3b
Igll1
Klhdc4
Ift22
Sec23a
Gemin2
Chd9
Cebpe
Mllt6
Smim4
Nt5dc2
Liph
Adora1
Esyt2
Rhot1
Uri1
Parl
Ssr2
Fnbp1l
Tet1
Spic
Fam240a
Krr1
Doc2g
Riok1
Cage1
2700062C07Rik
Kdm5b
Pxk
Ndufv1
Myo10
Dstyk
Vinac1
Ttl
Naglu
Mrpl28
Pgap6
Enpp3
Ahdc1
Zscan10
Fam166b
Upk3bl
Plekhh1
Dppa5a
Syngr1
Rpl3
Nufip2
Uqcc3
Ubxn1
Pkm
Mrpl58
Aftph
Cdk5rap3
Scgb1a1
Smug1
Mdp1
Casq1
Sulf2
Pycard
Olfr1499
Sf3b2
Gal3st3
Wdr74
Stx5a
1700092M07Rik
Cox7a2
Zmynd15
Med11
Bloc1s4
Psmd6
Tmem208
Lrrc29
U2surp
Rtca
Dbt
1700020L24Rik
Zfp979
Epb41l4a
Dact3
Mtmr10
Fra10ac1
Exosc6
Eps15
Zscan12
Zfp600
Ppp6c
Arl8b
Poglut3
Mrpl30
Mitd1
Dennd2c
Lefty2
Plvap
Apol9b
Ifitm1
Cacng3
Sgk1
Zfp207
5730455P16Rik
Aacs
Atp5g2
Champ1
Traf4
Cr1l
Sptbn4
Plekhb1
Camk2b
Psmd7
Clk4
BC049762
Pcbp2
Snrnp27
Fmnl3
Pom121
Napg
Pdk1
Plekhm3
Naxe
Pld3
2310022A10Rik
Scn5a
Gm15517
Dhrs7b
Acp4
Jund
H3c11
H2bc22
H2ac22
H1f5
Hmox1
Slc2a1
Atp5g3
Anapc10
Abce1
Trip6
Srrt
Vdac1
Olfm1
Tnpo3
Atad3a
Plekhf2
Pdss1
Erfl
Snrpd3
Gucd1
Aasdh
Mcrip2
Nfkbie
Dcaf10
Ndufc1
Naa15
Mta2
Psmf1
Wdr90
Mok
Zfp738
H2bc1
H2ac1
Tmem151b
Gemin6
Acp5
Ccdc92b
Zfp36
Klf2
Arl14ep
Zc3h10
Rpl41
Ilf2
Caprin2
Trmt1
Nacc1
Map7d1
Pfdn5
Myg1
Psmc2
Dnajc2
Rps26
Rbsn
Paf1
Med29
Ttc39b
Pcyox1l
Ogt
Acsm3
Iqcn
Cirbp
Fam174c
Ttyh2
Rpl38
Mrps31
Commd2
Kash5
Dmtn
Tsc22d1
Pdss2
9530077C05Rik
Tle3
Tmem115
Anln
Nprl2
Cyb561d2
Lats2
D17H6S53E
Rrp1
Rrp15