ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX277329 | MEL
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◣ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Tcstv3
Cldn34d
Greb1
Rptor
Zfp513
Snx17
Eif2b4
Tbcd
Eif2b5
Txndc11
Brox
Aida
B9d1
Hexb
Setdb1
Scrib
Aaas
Sepsecs
Chmp6
Tmed2
Rilpl1
Dok3
Ddx41
Ndufaf5
Esf1
Epg5
Atf6
Kpna1
Mtmr10
Cox6c
Olfr806
Ttyh2
Rpl38
Nkx2-6
Gpn3
Fam216a
Mrpl44
Get1
Pold3
Armc1
Abhd6
Mapkbp1
Fitm2
Ndufa9
Akap3
Il31ra
Sass6
E030030I06Rik
Cenps
Dync1i2
Zfp949
Ufl1
Pus1
Ep400
Zdhhc1
Terf2
Mvk
Mmab
Opa1
Rnf7
Ndufb8
Hif1an
Sec31b
Vps72
Pip5k1a
Med17
Stk32c
Lrrc27
Tsfm
Klhl18
Kif9
Borcs7
Pcdh20
Lamtor5
Uqcc3
Ubxn1
Dus2
Ddx28
Timm50
Crebl2
Zfp846
Dnajc16
Casp9
Cul2
Ndufs4
Zpr1
Bud13
Sdad1
Lypla2
Gale
Prrt2
Maz
Kpna6
Crlf3
Atad5
Ift22
Syngr1
Rpl3
Xpc
Lsm3
Wwox
Cog7
Pop7
Rtcb
Yipf2
Timm29
Aldoa
Tmem205
Ccdc159
Rab3d
Plppr2
Tlcd3b
Ppp1r7
Pask
Tnfaip8l2
Tmod4
Scnm1
Lysmd1
Cdca4
Setd4
Cbr1
Zdhhc7
Zfp933
Nuf2
Med6
Pdcd7
Pigu
Akirin2
Calcoco1
Snrpc
Pole3
Alad
4933430I17Rik
Mrpl19
Mis18bp1
Sugp2
Armc6
Bbs5
Dhx16
Fbxw4
Zfp668
Zfp646
Aldh9a1
Retsat
Elmod3
Wdr12
Carf
Rab5if
Rhot1
Atrn
Clptm1
Apoc2
Oasl1
Clcn7
Gss
Mccc1
Mink1
Psmd9
Aadacl2fm1
Zc3h18
Fyco1
Xcr1
Slc18b1
Rps12
Get4
H4c14
H3c13
H2bc18
Cluh
Bod1l
LTO1
Rnf113a1
Ndufa1
H2bc21
H2ac21
H2ac20
Mgst3
H4f16
H2aj
Dis3l2
Ppp6c
Ndufb5
Mrpl47
Tbcb
Polr2i
Ovol3
Olfr1274
Marchf3
Raver1
Sstr1
Erc1
Med18
Med23
Riok1
Cage1
Mtif3
Frg1
Rbm8a
Pex11b
Itga10
Trmt1
Nacc1
Rbl2
Smarcal1
Nme1
Gatad2b
Sspn
Kif2c
Slc25a32
Dcaf13
Rnf123
Mst1
Eif3c
Pcmt1
Nup43
Fntb
Tgfbr3l
Map2k7
Mtrex
Dhx29
Dmap1
Als2
Tars
Jund
Iqcn
Drg2
Rnf10
Coq5
Treml4
H2bc6
H4c4
H3c4
H2bc7
H2ac7
Dcp1a
Mff
Gpatch1
Blmh
Rab27a
Pigbos1
Pigb
H1f3
H3c6
H2bc8
H2ac8
Cep63
Anapc13
Aebp2
Gtf2b
Atad3a
Gmfb
Cgrrf1
Gzmk
Nxpe5
Smg8
Tyw3
Cryz
Snapc2
Ctxn1
Vta1
Csf2ra
Ranbp6
9930021J03Rik
Ccdc57
Pds5b
N4bp2l2
Hdhd3
Col6a6
Ier3ip1
Heatr1
Pkig
Mettl25
Ccdc59
Zfp560
Poc5
Gspt1
Stk35
Rp9
Bbs9
Tmem250-ps
Gorasp2
Usp39
0610030E20Rik
Ap1g1
Smarca4
Ddx42
Ccdc47
Wdr43
Rrp1
Pacsin3
Arfgap2
Tmem129
Tacc3
Slbp
Ikzf5
Acadsb
H3c15
H3c14
H2ac19
H2ac18
Pdcd2l
Cep295
Rsrc2
Kntc1
Sde2
Fdxacb1
Alg9
1110032A03Rik
Rabl6
Ccdc183
Ndufs3
Kbtbd4
Wdr5
Lsm6
Tmem18
Irf2bpl
Pbk
Mtmr2
Gm10710
Dchs2
Ube2j2
Hdgf
Dnttip2
Slc14a2
Oga
Nup54
Diaph1
Fbxw7
Acsf3
Trp53rkb
Rab33b
Gid8
Dido1
Mrpl21
Ighmbp2
H4c3
H1f6
Ppp4r3b
Cd59b
Ints2
Nyx
Nfat5
Gcnt2
Nudt5
Cdc123
Mcl1
Erdr1
Chordc1
Stx8
Cfap52
Vmn2r102
Nup153
Psd
Fbxl15
Ttc39d
Srsf7
Tarbp2
Npff
Map3k12
Taf11
Anks1
Zglp1
Kctd3
Zfp809
Pde6d
Cops7b
Ermp1
Palb2
Dctn5
Prcc
Tspyl2
Lig4
Abhd13
4930415O20Rik
Ccnt1
Slc38a2
Snx5
Mgme1
Tmem248
Hps5
Gtf2h1
Stxbp4
Cox11
Olfm1
Ipo9
Maneal
Gm3448
Gm3417
Tcte3
Ermard
Mrps35
Pyroxd1
Esr1
Tspan4
Polr2l
Cd151
Cdkal1
Nelfa
Samt2b
Asmt
Psmg3
Tatdn3
Nsl1
Rap1a
Nudt13
Uevld
Coa6
Cox8c
Cdh12
Nbas
Zfp511
Tubgcp2
Ap1s1
Dgat1
BC028528
Bnip1
Aph1a
Ifna13
9030025P20Rik
Arl5a
Thg1l
Osbpl1a
Birc5
Swsap1
Epor
Mrpl30
Mitd1
Clpx
Ilf2
Npr1
Dpagt1
Hmbs
H2ax
Phf23
Gabarap
Dvl2
Mrpl35
Immt
Trrap
Tmem130
Mettl9
Tecpr1
2410002F23Rik
H4c11
G3bp2
Clec2g
Commd1
Cct4
Ppip5k2
Gin1
Tbl3
Sympk
Calm2
Slc39a4
Cpsf1
Foxa3
Usp30
Svop
Smn1
Mrpl4
Tbc1d7
Napepld
Srr
Smg6
Polr3g
Mblac2
Xrra1
Spcs2
Pik3r3
Ciart
Uspl1
Zfp207
5730455P16Rik
Dpy19l4
Cdc16
Siah1a
Cdk7
Mfap2
Golga4
Tti2
Birc2
Rprd2
Clcn3
2610001J05Rik
Pts
Nup133
Gm525
Stx16
Wdr36
Ap4e1
Klhdc4
Mrpl1
Atg4c
Tob1
Nemf
Mrpl20
Ccnl2
H3c3
H2bc3
H1f2
H3c2
H2ac4
Spns1
Lat
Gabpb2
Taco1
Atp9b
Actb
Eapp
Luc7l
Fam234a
Mapkapk5
Rita1
Ddx54
Mrps30
Gm3435
Fam189b
Exoc7
H3c8
H4c6
H3c7
H2bc9
Tm7sf2
Zfpl1
Vps51
Tmem262
Cdca5
Lgals8
Rfk
Snrpd3
Gucd1
Rrp15
Cfap45
Ddx19a
Bmpr1b
Prom2
Mrpl2
Klc4
Cul7
Hars2
Hars
Atr
1700065D16Rik
Atp5g1
Morf4l1
Fam149b
Ecd
Tgfb1
B9d2
Tmem91
Copb1
Arhgap11a
Atp1b2
Tchp
Eefsec
Ciao2b
Arf6
Lonp1
Catsperd
Ppbp
Anapc5
Rlf
Pf4
Gsk3a
Aggf1
Hsph1
Rs1
Rsph3b
Ddx3x
Tmub1
Fastk
Agap3
Trim50
Fkbp6
Trmt5
Slc38a6
Gtf2f2
Tmem211
Cct8
Atg16l1
Arnt
Fcgr4
Rusf1
Cdc37
Slc39a1
Tinf2
Nedd8
Gmpr2
Cox5a
Mtpap
Hbs1l
Creb3l4
Rnf180
Insig1
Fmc1
Sec22b
Slc25a51
9530077C05Rik
Anln
Srp19
H4c9
H2bc12
H2bc11
H2ac12
H2ac11
Slc26a8
Mapk14
Zfp26
Ppp1r11
Znrd1as
Znrd1
Rnf39
Wdr61
Prr14l
Depdc5
Slc43a1
Ankzf1
Hspa5
H4c2
H4c1
H3c1
H1f1
Marchf6
Secisbp2l
Slc39a13
Pan2
Il23a
Nsa2
Gfm2
Tcp1
Pnldc1
Mrpl18
Mtg1
Spg11
Sfxn5
Cdk11b
Ubox5
Fastkd5
E130309D02Rik
Tecpr2
Cinp
Arel1
Clasp1
Fcgr1
Stx18
Zfp426
Nvl
Cnih4
Ndufs1
Eef1b2
Pex19
Tex14
Sfi1
Eif4enif1
Htra2
Dqx1
Micall2
Kctd5
Olfr1416
Ndufa10
P4ha3
Ubc
Rundc1
Ptges3l
Aarsd1
Sumo2
Commd2
Hpx
Unk
H3f3b
Chmp4b
Zar1l
Brca2
Eif4g2
Abraxas2
Ube4a
Ap3s2
Rrh
Gar1
Cfi
Mrps31
Tmed4
Ddx56
Ldlr
Nudt14
H1f4
Zfp143
Tmem167b
Taf13
Rbks
Babam2
Arpc2
Ints6
Tmed9
B4galt7
Mkrn2os
Mkrn2
Tars2
Lrriq3
Fpgt
Esyt2
Tmem39a
Lancl2
Cyp2w1
Ptar1
Cox19
Gcgr
Tmem125
Serpini1
Pdcd10
Cerk
Ppm1b
Zfp36l1
Bms1
Ppp6r3
Kat2b
Mllt11
Cdc42se1
Vps29
Rad9b
Mrps21
Atp1a1
Erlin2
Ammecr1
Mfap5
Phf20l1
Rab11a
Map3k4
Lrpprc
Cnot1
Gtf2h3
Eif2b1
Man1a2
Chmp7
Pknox1
Cd209a
Pcif1
Rpp30
Cnpy3
Zfp212
Zfp407
Trim29
Slc25a11
Rnf167
Thap11
Nutf2
Cenpt
Pan3
Ythdf1
Birc7
Gp1ba
1810010H24Rik
Selenbp1
Hgsnat
Pdss1
Prdx1
H2bc4
H2ac6
Oxsm
Ngly1
Sacm1l
Rsbn1
Asb7
Zbtb4
Slc35g3
Polr2a
Psmb2
Zfp692
Dus1l
Nop16
Higd2a
Pdzd8
Tmem50a
Syf2
Rsrp1
Snrpa1
Mppe1
Elp5
Ctdnep1
Asic1
Erlec1
Asb3
Selenbp2
Plek
Hnrnpa2b1
Cbx3
Sirt4
Dnajb4
Fubp1
Psmd3
Polg2
Ddx5
Cep95
Ezh1
Asb1
Fosb
Paxip1
Rtn2
Rnf166
Ctu2
Ttll11
Tcerg1
Med31
4930563E22Rik
Txndc17
4933427D14Rik
Vps33b
Ngrn
Coa7
Atp2a1
1700001P01Rik
Caprin1
Rpl23
Copz1
Gtf3c3
Mcph1
Mrpl22
Gemin5
Tmem39b
Ovol2
Matr3
Vegfa
Ppil4
Gsdma2
Prpf3
Txnip
Slc3a2
Rfx3
Khdc4
Anp32e
Nat10
Oaf
Gdf1
Ube3c
Msra
Wdr77
Atp5pb
H2-L
H2-D1
Ppig
Fastkd1
Plin2
Tbck
Aimp1
Klhl7
Espn
Eif2s1
Atp6v1d
Nxt2
Taf4
Trmo
Krr1
Ndufc2
Zfp317
Pml
Gle1
Sec13
Nipsnap2
Mrps17
Pogz
Tfb2m
Cnst
Gtf3c6
Pald1
Ndufs7
Tsg101
Fam83a
Wnk4
Vps25
Ramp2
Tox2
Hsp90aa1
Smndc1
Mre11a
Ankrd49
Ppp1r10
Mrps18b
Atat1
Dhx33
Leng8
Taf5
Mcfd2
Abca3
Abca17
Zfp791
Ddx59
Fra10ac1
Klf4
Nupr1
Slc7a15
Sec61a1
Rpl12
Lrsam1
Rps23
Pmf1
Zfp318
Bzw2
Ankmy2
Anapc10
Abce1
Ttc32
Mis12
Derl2
Ric1
Cdhr4
Inka1
Taf9
Sephs2
Rad17
Ak6
Uba7
Srek1ip1
Cwc27
Trub1
Ctnna3
Atrnl1
Crlf2
Aqp9
Tmem104
Nat9
Havcr2
Polr2m
Nr1h3
Acp2
Dcaf10
Kcne2
Ubxn4
Smim11
Acp6
Nadk2
Samsn1
Kansl2
Nubp1
Ppan
Angptl6
Utp15
Ankra2
Mrto4
Emc1
Med20
Gm20517
Bysl
AI467606
Arl4d
Zfyve1
Snrnp27
Rnf6
Cdk8
Pum2
Prmt7
Safb2
Safb
Plvap
Adcy9
Tmem87b
Arhgap23
2700062C07Rik
Wdr59
Pus7l
Irak4
Saraf
Leprotl1
Ppp3cb
Slc44a2
Ap1m2
Gatad2a
Rps24
Polr3a
Ift172
Gckr
Fndc4
Ssr2
Arhgdib
Erp27
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
Trip4
Pclaf
Zfp653
Eipr1
Fahd2a
Sdf4
B3galt6
Trappc12
Galk2
Cops2
Mapk1
Capza1
Brf1
Vars2
Gtf2h4
Rbbp5
Tut7
Vdac2
Aip
Inpp5k
Atf7