ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX620288 | NIH/3T3
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◣ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Tcstv3
Txndc11
Sspn
Pgk1
Aldh9a1
Il31ra
Hexb
Kpna1
Dnah7b
Greb1
Rsph3b
Cerk
Col6a6
Gm10710
Dchs2
Rsph3a
Zfp945
Ccn1
Nkx2-6
Errfi1
Ifrd1
Serpine1
Egr1
Flnc
Ier2
Actg1
Cd209a
Thbs1
Olfr1274
Nr4a1
Actb
Dusp1
Dusp5
Osbpl1a
Abca3
Abca17
Ptgs2
Tmem125
Cldn34d
Ubc
Prdx2
Junb
Vim
Mt1
Mt2
Gm525
Tpm1
Fos
Brox
Aida
Oasl1
Zfp791
Olfr806
Dnajb1
Abhd6
Sgk1
Homer1
Mbd6
Ddit3
Btg2
Ccn2
E030030I06Rik
Hspa5
Atp5g1
Gadd45g
Id3
Zyx
Pknox1
Cox8c
Rps19bp1
Atf4
Ttc4
Ifna13
Csf1
Hspa8
Ugdh
Jun
Syn2
Dcaf5
Tulp4
Insig1
Zfp598
Npw
Gm13285
Gm13290
Gm13289
Gm13287
Gm13279
Gm13278
Gm13275
Gm13288
Gm13277
Ier3
Flot1
Tmem18
Vcl
Fn1
Arc
Arl4d
Btg1
Vmn2r4
Celf2
Hmox1
Ifnz
Gm13272
Mat2a
Timp2
Prickle1
Egr3
Tle1
Calm1
Gtf2i
Zfand5
Gm13276
Slc2a1
Asmt
Med23
Wwox
BC005537
Palld
Rubcn
Fyttd1
Myh9
Pdlim5
Tab1
LOC666331
Gm11634
Jund
Iqcn
Ier5
Tmsb4x
Nol12
Lgals1
Plk2
Sf3a3
Mcl1
Dnaja1
Ccl7
Csf2ra
Pald1
Trim50
Fkbp6
Polg2
Ddx5
Cep95
Map7d1
Trappc3
Rdm1
Smad1
Kdm2a
Fyco1
Xcr1
Nemf
Speer4f1
Tex14
Itga5
Hmgcr
Tob1
Srxn1
Sqle
H3c3
H2bc3
Gm3448
Gm3417
H3c2
H2ac4
Tcte3
H4c2
H4c1
H3c1
Gm3435
F3
Noct
Prdx1
Ap1g1
Aaas
Bod1l
Utp14b
Acsl3
Cav1
Zfp36
Plekhg2
Tob2
S100a3
S100a2
Blmh
1810013L24Rik
Cdkn2aipnl
Nme1
Unk
H3f3b
Ermard
Sdc4
Mtf2
Prkce
Mia2
9030025P20Rik
Trib1
Zfat
Cltc
Arl8b
Phlda1
Rps29
Lrr1
Myl12a
Mrpl20
Ccnl2
Gtf3c3
Mrps2
1700007K13Rik
Gm13286
Gm13283
Gm13271
Olfr938
Utp3
Hmgcs1
Lyrm2
Lrp12
Ftl1
Bax
Nfat5
Yap1
2200002J24Rik
Lmna
Tiparp
Smo
Marveld1
Ppia
Ccl2
Atp2a2
Nipbl
Fth1
Rasl2-9
Ctnnb1
Rpl10a
Zswim6
Ankrd40
Drg1
Oxct1
Traf6
Fabp12
Id1
Hnrnph3
Arl14ep
Pbld2
Rel
Csrp2
Dnajb4
Fubp1
Ctnnd1
Btbd18
Cdc42ep3
Tapbp
Rgl2
Shld2
Glud1
Sesn1
Fosb
Snx18
Fem1b
Notch2
Lrp6
Nrf1
Fbxo7
Bpifc
Tpt1
Lbh
Kansl3
Fer1l5
Camk2d
Mideas
Frg2f1
Foxj3
Cldn12
Cpd
Gorasp2
Rcn2
H3c15
H3c14
H2ac19
H2ac18
H1f3
H3c6
H2bc8
H2ac8
Ppp1r15a
Plekha4
Actr3
Ifi211
Sox9
Cavin1
Qser1
H3c11
H2bc22
H2ac22
H1f5
Them4
Vamp4
S100a6
S100a5
S100a4
Septin9
Glis1
H2bc6
H4c4
H3c4
H2bc7
H2ac7
Zfp36l2
Rtn4
Rpl22l1
Azin1
Eml4
Dnajc24
Tox4
Rab2b
Eef1a1
Uspl1
Tcea1
Mrps33
Acap2
Mterf1a
Idi1
Cul1
Lsm11
Tnfrsf12a
Thoc6
Hcfc1r1
Cldn6
Cldn9
H2-DMa
Brd2
Htra2
Dqx1
Lox
Zfp142
Bcs1l
Sfi1
Eif4enif1
Hbegf
Surf6
Rpl7a
Med22
Nipsnap2
Mrps17
Guca2b
Ulk2
Baiap2
Ptbp1
Uvssa
Opa1
Dgat1
Raf1
Ncbp2
0610012G03Rik
Gpatch8
Actn4
Zbtb4
Slc35g3
Polr2a
Ccnl1
Rnft1
Txnrd1
Eid3
Radil
Thap12
Enho
Prkca
Pds5b
N4bp2l2
Ppp2cb
Ankrd1
Nabp1
Ndufs7
Ccdc88a
Kif21b
Sec22b
Hrob
H4c3
H1f6
Poldip3
Cipc
Tbp
Psmb1
Slc25a3
Fasn
Neurl4
Acap1
2810408A11Rik
Stx18
Atp6v1h
Ier5l
Cacybp
Rap2b
Pten
Fam133b
Tnfaip6
Mylip
Tab2
Gdf3
Rps20
Srsf1
Socs3
Ift46
Arcn1
Mrps31
Tlcd1
Rpl23a
Rab34
Proca1
Ubxn2a
Atad2b
Naa16
Mtrf1
Hnrnph1
Hgsnat
Nufip2
Mterf1b
Aacs
Nbea
Dlx2
Pdia3
Catsper2
Slc39a13
Uchl5
Ro60
Txn2
Timp1
H2bc21
H2ac21
H2ac20
Med7
Ddit4
Sh3glb1
Uhrf1bp1l
Cyb5r3
Sgcd
Mapkbp1
Agk
D3Ertd751e
Myo18a
Cyp51
Galk2
Cops2
Ythdf2
Tef
Cebpb
Bhlhe40
Ephb3
Slc25a32
Dcaf13
Lrig2
Medag
Syngr1
Rpl3
Cfl1
Sbno2
Rhoq
Hrh2
Ubb
H2-DMb2
Faf1
Cdkn2c
Wdr25
Wars
Wdr70
Nup155
Rtn3
Vpreb1
Top3b
Igll1
Pcbp2
Fus
Rhob
Gadd45b
Apc2
Pabpc4
Ddhd2
Rps15
Creb1
Ubtf
Pex2
Eci1
Esyt2
Sertad1
Wdr81
Tlcd2
H4f16
H2aj
Fbxw4
H4c14
H3c13
H2bc18
H4bc24
H2bc23
H2ac24
H2ac23
Srsy
Gm21828
H4c18
Cxcl1
Eif1
Cwc22
H1f2
Setd4
Cbr1
Aadacl2fm1
Klf7
H1f4
Eapp
Ube2a
Hnrnpa2b1
Cbx3
H3c8
H4c9
H2bc12
H2bc11
H2ac12
H2ac11
Ttc39d
Srsf7
Ppp1r10
Mrps18b
Atat1
Arf6
H4c17
Tsc22d1
Nfkbia
Kif2c
H2ac10
H4c8
Taf12
Gmeb1
H4c6
Slc35e3
Acacb
Raly
Mdm2
Fam53c
Cdc25c
Zfp143
Gtf3c6
Sp1
H3c10
H2bc13
H2ac13
Cited2
Srsf2
Mfsd11
Adamts1
Fam227b
Dtwd1
Fbxl18
H2bc14
Chac1
Zfp36l1
Cirbp
Mettl23
Sirt4
Rplp0
Gcn1
Cebpd
Cdh12
Sqstm1
Slc38a2
Herpud1
Cdkn1a
Zfp949
Nfkbiz
Fam174c
Pnrc1
Scrib
Sympk
Ppp1r12a
Txnip
Znfx1
Lima1
H1f1
Pcif1
Calcoco1
Tuba1c
Srsf5
Odc1
Efcab2
Clec2d
Yeats4
Tmem167b
Ptp4a1
Hsp90aa1
Tmem107
Slc35b2
Dpagt1
Tuba1a
Sik1
Rbm39
Litaf
Slc14a2
H2bc4
H2ac6
Hmbs
H2ax
Rgs2
Srsf6
Olfr855
Olfr854
Ddx3x
Pcbp1
Srsf3
Slc25a4
Hsp90ab1
Nudt13
Esr1
Tuba1b
Slc3a2
Ywhaz
H3c7
H2bc9
Epc1
Tti2
Ddx23
H4c11
Tmem123
Car5a
Banp
Nup62
Il4i1b
Atf5
Ints6
Vmn2r102
Serinc3
B2m
Zfp207
5730455P16Rik
Cdc42
Tecpr1
Rptor
Zfp513
Snx17
Eif2b4
Pabpc1
9430015G10Rik
Erdr1
Klf6
Zfp869
Usp4
Gpx1
Eif5
Rcc1
Mrpl44
Taf4
Tra2a
Gtf2b
Setd5
Calm2
Pole4
Dync1i2
Kmt2e
Cnot1
H2-L
H2-D1
Col1a1
Dstn
Mpdu1
Eif4a1
Larp4
Napepld
Phlda3
Hnrnpab
Tmem50a
Syf2
Rsrp1
Itgb1
Smim10l1
Med1
Cdk12
H4c12
H2bc15
H2ac15
Phf12
Ncl
Hexim2
Rsrc2
Kntc1
Ppbp
Amn1
Selenop
Rap1b
Stat3
Zfp963
Flna
Emd
Sde2
Coq10b
Shc1
Lmbrd1
G3bp1
Atox1
Trib3
Scaf1
Rras
Tmed2
Rilpl1
Urgcp
Lag3
Gcat
Pus1
Ep400
Hmgb2
Nfe2l2
Zfp1
Tmem129
Tacc3
Slbp
Chmp4b
Gapdh
Hif1a
Rnf10
Coq5
Zc3h6
Prcc
Resf1
Zfp868
Pkd1
Crem
Ptms
Retsat
Elmod3
Mknk2
Rad23a
H1f0
Eef2
Dapk3
Slc18b1
Zfp655
Wsb1
Pim3
Calr
Matr3
Atp6v0c
Amdhd2
Cxcl5
Tmsb10
Gem
Senp3
Tctex1d4
Btbd19
Sptan1
Rps12
Pias4
Nfkbil1
Ddx39b
Atp6v1g2
Zbtb37
Uqcc3
Trmt10c
Pcnp
Wnk1
Eif3a
Mettl25
Ccdc59
Eif3c
Eif4g2
Crebzf
Ppp1r2
Gls
Nip7
Irf1
Cog8
Kmt5b
Adnp
Fam166a
Ywhag
Fstl1
Teddm1a
Glul
Tra2b
Taf13
Stpg3
Pprc1
Pdlim7
Zbed5
Phkg1
Chchd2
Csrnp2
Rheb
Gtf2a1
Ppig
Usp48
Son
Gm36712
Gart
Snx5
Mgme1
Egr2
Spen
Piezo1
Map2k2
Creb3l3
Sec61a1
Pdss2
Trp53rkb
Rabgef1
Bach1
Arrdc2
Ctsl
Rnf19b
Ldha
Aff4
Slc9a1
Slc39a4
Cpsf1
Birc2
Ptpn6
Grcc10
Flad1
Cks1b
Ptpn2
Csnk1a1
Chrac1
Hnrnpa1
Cbx5
Zfp866
Map1lc3b
H2-K1
Ndel1
Top1
Morf4l1
Gadd45a
Ddx59
Cds2
Sp3
Klf2
Mthfd2
Mob1a
Ptma
Gm14595
Gm14590
Sfpq
Kdm6b
Slc39a10
Phf23
Gabarap
Dvl2
Slc39a1
Ep300
Rock2
Nfyc
Kctd5
Ubxn1
Idh3b
Tmem230
Pcna
Txnl1
S100a10
Tinf2
Nedd8
Ncor1
Gmpr2
Pdf
Sod1
Eif2b5
Gsto1
Mrpl45
Mbnl1
Txn1
Fitm2
Arntl
Nsrp1
Zc3h10
Rpl41
Chmp6
Phb
Nsd3
Letm2
9530077C05Rik
Arih1
Vdr
Sub1
Dynll1
Pigl
Cpeb2
Hmgn2
Cd80
Adprh
Gpx4
Ahnak
Dusp2
Astl
Vegfa
Hipk3
Sppl2a
Sf3b1
Ufl1
Selenot
Fgfbp3
Btaf1
Zfp637
Wbp4
Elf1
Acta2
Ptges2
Gabpb2
Sepsecs
Eif4e2
Chrng
Sned1
Rabggtb
Msh4
Frmd6
Hdlbp
Lrrc8a
Polr2m
Col4a2
Col4a1
Slc5a3
Mrps6
Rpl9
Lias
Tmem175
Gak
Rab5if
Zbtb11
Rpl24
Gstp2
Gstp1
Rps3a1
Ets2
Tm7sf2
Mmaa
Nsfl1c
Hexim1
Npm1
Sharpin
Maf1
Hnrnpa3
Cyc1
Prrc2a
Tmem87b
Parva
Map2k4
P4hb
Arhgdia
Ube2j2
Kdm5a
Ccdc77
Tmpo
Rps8
Rab11b
Ppm1a
Mtg1
Stau1
Tut7
Commd1
Cct4
Adpgk
Rpl17
Fosl2
BC031181
Sik2
Ubald1
Mgrn1
Rmi1
Hnrnpk
Kansl2
Pif1
Pafah1b1
Tubb4b
Slc34a3
Atf1
1700001P01Rik
Rfx3
Hspa4
Dusp11
4930415O20Rik
Ppp6c
Ap2m1
Ero1a
Luc7l
Fam234a
Ranbp2
Slc7a5
Cct8
Gpr84
Tbcd
Ndfip1
Ccng1
Gm35339
Sec62
Dpy19l4
Mmadhc
Rabl6
Pkm
Ccdc183
Psmd7
Pnp
Kat7
Saraf
Leprotl1
Fkbp1a
Aldoa