ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9144816 | 3T3-L1
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◣ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

H4f16
H2aj
H4c3
H1f6
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
H4c14
H3c13
H2bc18
Cxcl1
H2bc6
H4c4
H3c4
H2bc7
H2ac7
H3c15
H3c14
H2ac19
H2ac18
H3c3
H2bc3
H1f2
H4c17
H1f4
Cwc22
Slc35e3
Zbtb4
Slc35g3
Polr2a
Unk
H3f3b
H4c9
H2bc12
H2bc11
H2ac12
H2ac11
H3c8
H2ac10
H4c8
Mt1
Mt2
Fth1
Tex14
H3c11
H2bc22
H2ac22
H1f5
Eif1
Mdm2
Ppbp
Cxcl5
Adamts1
Tsc22d1
Ftl1
Bax
Txnip
H2bc21
H2ac21
H2ac20
H2bc8
H2ac8
Yeats4
Rps19bp1
Atf4
Mat2a
Slc38a2
Cldn34d
H3c2
H2ac4
H4c2
H4c1
H3c1
H1f1
Zfp36l1
Ubc
Actb
Ppp1r10
Mrps18b
Atat1
Herpud1
Nfkbia
H1f3
H3c6
H4c6
Polg2
Ddx5
Cep95
Sqstm1
Gadd45a
Eef1a1
Tuba1a
Pnrc1
Ppp1r12a
Poldip3
Ubb
Ddit4
H2bc4
H2ac6
Eapp
Selenop
Hmgb2
H3c10
H2bc13
H2ac13
H2bc14
Cited2
Vim
Zfp36l2
Gtf3c6
Hnrnpa2b1
Cbx3
Slc39a10
Clec2d
Btg1
Sp1
Col1a2
Tti2
Nup62
Il4i1b
Atf5
H4c12
H2bc15
H2ac15
Fam43a
Efcab2
Prdx2
Junb
Ints6
Kmt5b
Chac1
Gm3448
Gm3417
Tcte3
Ermard
Tob1
Ccl7
Ccl2
Srsf3
Srsf6
Kif2c
Gcat
H1f0
Gfpt1
Serinc3
Calm2
Taf12
Gmeb1
H4c11
Smim10l1
Zfp655
Ddx3x
Pcbp1
Lag3
Ptms
Slc25a4
Sned1
Sp3
Syngr1
Rpl3
Ttc39d
Srsf7
Cdkn1a
Slc3a2
S100a6
S100a5
S100a4
Fam53c
Cdc25c
Nsd3
Letm2
B2m
Tmsb10
Col1a1
Gem
Sirt4
Tuba1b
Zfand5
Uspl1
Itm2b
Usp4
Gpx1
Taf4
Ptp4a1
Calm1
Csf1
Atp6v0c
Amdhd2
Znfx1
Irf1
Rnf103
Ier3
Flot1
Prdx1
Casd1
Ctnnb1
Insig1
Klf7
Arf6
Cebpd
Raly
Epc1
Mbd6
Ddit3
Mgst1
Pcif1
Klhl24
9530077C05Rik
Anln
Cdkn1b
Lrrc58
Gm36028
Trib3
Resf1
Klf6
Map1lc3b
BC005537
Sik1
Zfp1
Rhob
Amn1
Angptl4
Ulk2
Dglucy
Acadl
Jund
Iqcn
Dennd6a
Crebrf
Phlda3
Pdk4
Hmgn2
Zc3h6
Teddm1a
Glul
Plk2
Rbm39
Fn1
Ctsl
Slc35b2
Hsp90ab1
Hmox1
Sec62
Arl15
Tmem167b
Txndc11
Nfat5
Nfe2l2
Gstp2
Gstp1
Arl4d
Poglut3
Paip2
Son
Gm36712
Gart
Cebpb
Cdc42
Ppp1r2
Tut7
Trmt10c
Pcnp
Hspa5
Btg2
Urgcp
Zfp963
Psap
Oser1
Mif
Sapcd2
Dpp7
Srsf2
Mfsd11
Mettl23
Slc23a3
Retreg2
Cnppd1
Sun2
Hexim2
Arhgap12
Snx9
Eif5
Rap1b
Notch2
Rplp0
Gcn1
Baz2b
Tmem140
Pim3
Ptpn6
Grcc10
Trp53inp1
Gars
Mmp2
Frs2
Napepld
Alyref2
Zfp207
5730455P16Rik
Slc5a3
Mrps6
Mak16
Arrdc3
Slc43a2
Tmem50a
Syf2
Rsrp1
Gpr19
Ccni
2010109A12Rik
Fstl1
Ptpmt1
Agbl3
Sppl2a
Acyp2
Litaf
Plin2
Stag1
Ccng2
Pck2
Oga
Odc1
Pot1a
Apc
4931414P19Rik
Dpy19l4
Dnajb4
Fubp1
Eif3a
Eif3e
Tmem107
Ep300
Asah2
Mrpl45
C3
Tmem128
Tcstv3
Ptma
S100a10
Adnp2
Ppia
Kctd20
Pxt1
Gsn
Eci1
Nde1
Marf1
Cdkn2b
Rpl5
Stat3
Rdh14
Cxcl12
Flcn
AW549877
Nup107
Gabarapl1
Phf2
Mrps18a
Rmnd5a
Actg1
Matr3
Tmem209
Ssmem1
Dynll1
Plpp3
Gxylt2
Rbms1
Pole4
Morf4l1
Brox
Aida
Rgs2
Zfp236
Sugp1
Mau2
F3
Tm9sf3
Epc2
Ak3
Dynlt1b
Prdm5
Pdcd4
Asns
St7
Dpagt1
Hmbs
H2ax
Hexim1
Aven
Wtap
Fbxo4
1810013L24Rik
H2bu2
Trim17
H3f4
H2aw
Mmp11
Gm867
Chchd10
Timp2
Clk1
Zscan25
1810058I24Rik
Baiap2
Nsrp1
Hipk3
Luc7l2
Bach1
H2-L
H2-D1
Mknk2
Kctd5
Ahnak
Prrc2a
Trmt44
Acox3
Hbp1
Samd9l
Rab43
Tm2d1
Pkn1
Ppp1ccb
Ppp1cc
Cebpg
Cct2
Rfc4
Hnrnph1
Hspa8
Thbs1
Ddx19b
Aars
Slc6a6
E030030I06Rik
Rsrc2
Kntc1
Fnip1
Slc18a1
Atp6v1b2
Pyurf
Osr2
Ywhag
Rab5a
Spen
Mthfd2
Mob1a
Zfp62
Pan3
Tbc1d5
Abca3
Abca17
Kmt2e
Hmgn1
Dusp10
1700056E22Rik
Mansc4
Klhl42
Fam227b
Dtwd1
Pnp
Trim35
Cltc
Piezo1
Tbrg4
Smyd1
Krcc1
Zfp605
Plcxd1
Gtpbp6
Pigt
Dbndd2
Clk4
BC049762
Rbm14
Gm21992
Atxn7l3b
Klf11
Rad23a
Pop7
Gadd45gip1
Dand5
Gigyf1
Pigv
Arrdc2
Rpl17
BC031181
Cald1
Lyplal1
Rmdn2
Sptan1
Usp53
Pcmtd1
Tnfsfm13
Tnfsf12
Pkd1
Lrp6
Uhrf2
Patj
Spata25
Neurl2
Ctsa
Retsat
Elmod3
Gls
Fbxl3
Gng12
Fam122a
H2-DMa
Brd2
Usp34
Sde2
Rrn3
Fbxo31
Thbs3
Mtx1
Lcmt2
Adal
Col3a1
Lox
Ncoa5
Pdpk1
Mbnl1
P4hb
Arhgdia
Cul1
Mos
Hspa9
Nagk
Zbtb44
Cplane1
Sppl3
Phkb
Itfg1
Cox20
Cpsf6
Serinc1
Fus
Cd80
Adprh
Twf1
Tmem223
Tmem179b
Zmiz2
Nip7
Cog8
Pdf
Zer1
Tbc1d13
Nop2
Ifi211
Zbtb11
Rpl24
Trim39
Tax1bp1
Emc7
Csnk1a1
Mterf1b
Pura
Bbs2
Zfhx3
Mia2
Mtg2
Wsb1
Hnrnpf
Thap1
Tceanc
Vps36
Ckap2
Yap1
Bdnf
Zdhhc21
Ghr
Zfp69
Zfp143
Nfkbil1
Ddx39b
Atp6v1g2
Hnrnpa1
Cbx5
Gsto1
Zfp637
Atf1
Copb1
Dazap2
Zfyve1
Amacr
Arhgef7
Tbl1xr1
Chic2
Crbn
Zbtb38
Zfp868
Slc18b1
Rps12
Parva
Mllt10
Skida1
Rdh5
Cd63
Mdfic
Atp6v1h
Add3
Ddhd2
Kctd18
Nabp1
Zfp866
Eif4ebp1
Mrpl2
Klc4
Cul7
Dync1li2
Rab11fip2
Mkln1
Pggt1b
Ywhaz
Slc7a5
Ndfip1
Ctdsp1
Ptrhd1
Cenpo
Rufy1
Arl14ep
Atp5g3
Seh1l
Usp16
4930453N24Rik
Lrrc61
Ptn
Atp23
Spg11
Guf1
Rnh1
Ncoa3
Heatr4
Acot2
Hexa
Gpr85
Acbd5
Adam10
Smim14
Pcmtd2
Hsp90aa1
Pafah1b2
Sem1
Asap1
Tet3
Atp6v1e1
Rbm33
Zfp119a
Gngt1
Gng11
Gpx4
Pafah1b1
Tmem39a
Camk2d
Lin7c
Stat6
C330018D20Rik
Hdhd2
Cdkn2a
Ing3
Nfkbiz
Zfp869
Susd6
Malsu1
Tomt
Lamtor1
Anapc15
Kdm3a
Kdm5b
Mri1
D8Ertd738e
Adnp
Mmadhc
Slc5a6
Cad
Atraid
Scnn1a
Ltbr
Kiz
Idua
Dgkq
Slc26a1
Hhat
Itgb1
Birc2
Ube2l3
Rimbp3
Psma3
Rpl15
Nkiras1
Rad9a
Ppp1ca
Tbc1d10c
Ankrd12
Ccnl1
Rps20
H3c7
H2bc9
Rab7
Irs2
Ube2d3
Phykpl
Siah1a
Cat
Cdx1
Pdgfrb
9030025P20Rik
Sod1
Ddx6
Mocs3
Dpm1
Gm10130
Nrbp1
Mios
Prkag1
Rchy1
Vamp8
Vamp5
Phgr1
Ccdc9b
Tmem125
Taok1
Ubxn8
Ppfibp1
Rpl39
Cul5
Zc3h15
Zfr
Plin5
Plin4
Spata1
Gng5
Itfg2
Kpna2
Rmi1
Hnrnpk
Rprd2
Nptn
Usp38
Tasor
Rhof
4833420G17Rik
Pum2
Setd1b
Manbal
Wwp2
Sdc4
Fgfbp3
Btaf1
Ube2v2
Sv2a
Sf3b4
Rpl32
Nedd4
Tubg1
Retreg3
Zfp248
Mxd4
Zbed5
Phkg1
Chchd2
Gm20346
Anp32a
Tmem106b
Nrf1
Smad1
Aip
Lamp2
Mrpl40
Hira
Tmem134
Gpd2
Insr
Pccb
Nfyc
Mmaa
Sft2d3
Tmem165
Il6ra
Ifi27
Ddx24
Ifi27l2a
Polr2m
Trdmt1
Mogs
Mrpl53
Ccdc142
Golga1
Cyb561d1
Atxn7l2
Abcc1
Camkk2
Calr
Map2k2
Creb3l3
Aasdh
Vps37a
Cnot7
Pank2
Rbm12
Cpne1
Ube2b
Cdkl3
Snx13
Pabpc1
Rnf10
Coq5
Raf1
Selenot
Strap
Fbxw11
Trmt10a
Mttp
Mrps35
Zbed3
Egf
Gpr137b
Tra2a
Zmat2
Gtdc1
Zfp638
Ubr2
Pet117
Kat14
Nsd1
Btbd3
Ppp1r15a
Plekha4
Tmf1
Mcrip2
Wfikkn1
Mettl26
Scaf11
Maea
Bpnt2
Nudt3
Nsun3
Mrpl20
Ccnl2
Ero1a
Pkm
Relb
Zmat1
Hlcs
Il6st
Ankrd37
Ppp1r3c
Kbtbd3
Aasdhppt
Fcho2
Chka
Rab22a
Gpr155
Parp11
Anapc4
Usp24
Wdr19
Slc25a24
Wnk1
Dusp11
Washc4
Aldh1l2
Ddx17
Hspa1b
Atxn2
Sgo1
Cnot6
Id1
Eif4g2
Zc3h4
Ier5l
Hnrnpdl
Enoph1
Ghitm
Chd4
Egln2
Ahnak2
Tcp11l2
Ncl
Txn1
Ubald1
Mgrn1
Tomm34
Stk4
Nubp1
Slc17a7
Pih1d1
Aldh16a1
Thbs2
Zfp507
Setd7
Gm3435
Fam166a
Stpg3
Tubb4b
Slc34a3
Ndufv2
Cdk9
Brpf3
Haus1
Atp5a1
Washc1
Gnb2
Utrn
Prss23
Slc35a3
Kdm6b
Hnrnpa3
Rnf111
Msl1
Rhbdl1
Ccdc91
Lig3
Wasf2
Rhot2
Obi1
Bmf
Zmym2
Gtf2i
Spred1
Rtkn
Sdccag8
Cep170
Ier2
Gtf2b
Ift46
Arcn1
Zfp959
Eif3d
Metap1d
Prrx2
Zeb2
Rps8
Arl8b
Sox9
Pskh1
Nrn1l
Cep295
Tnks2
Rnf146
Smo
Tigd2
Eif3c
Champ1
Patl1
Srd5a3
Galnt11
Sltm
Tmem175
Gak
Dync1h1
Timm44
Fnta
D2hgdh
Psmd5
Cutal
Uba6
Zfp326
Hdac4
Tbc1d9b
Adamts5
Ptpn2
Sars
Wdr4
Ndufv3
Topbp1
Tmem192
Spaca6
Spag6
Gnb1l
Tpk1
Dnaja1
Lbh
Pten
Kdm5a
Ccdc77
Rab33b
Nars
Eif2s2
Nuak1
Mob1b
Fam13b
Crot
C1d
Tmem17
Atp6v1g1
Plekhm3
Anxa2
Zfp874b
Gbp2
Rsph3b
Eef2
Dapk3
Pias4
H3f3a
Pradc1
Cct7
Rbbp6