ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX255482 | MEF
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◣ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Srsf2
Mfsd11
Mettl23
Polg2
Ddx5
Cep95
Syngr1
Rpl3
Ttc39d
Srsf7
Unk
H3f3b
Actb
Fus
Ddit4
Ubc
Sp1
Tuba1b
Ier3
Flot1
H4c14
H3c13
H2bc18
H3c15
H3c14
H2ac19
H2ac18
Tuba1a
Setd5
Rps19bp1
Atf4
Tmem125
Cirbp
Fam174c
H4c11
Mat2a
Ppia
Fth1
Anapc5
Calm1
Hnrnpa2b1
Cbx3
Chrac1
Errfi1
Id3
H2bc21
H2ac21
H2ac20
Tpm1
Insig1
Pdlim7
Prdx2
Junb
H1f3
H3c6
H2bc8
H2ac8
Ldha
Gm3448
Gm3417
Tcte3
Gm3435
Puf60
Zfp866
Slc3a2
Usp4
Gpx1
H4bc24
H2bc23
H2ac24
H2ac23
H4c17
Dusp1
Fam53c
Cdc25c
Urgcp
Ptbp1
Rplp0
Gcn1
Ptpn2
Ccn1
Id1
Tmem50a
Syf2
Rsrp1
H2bc6
H4c4
H3c4
Irf1
Ftl1
Bax
Pkm
Smarcb1
Ier2
Mknk2
Wdyhv1
Atad2
Mcl1
Tob1
Sdc4
Hbegf
Timp2
Ncl
P4ha1
Ndufs7
Eef1a1
Zbtb4
Slc35g3
Polr2a
Def8
Col1a1
Mthfd2
Mob1a
Mif
Nol12
Lgals1
Ptgs2
Hnrnpab
G3bp1
Atox1
Map2k2
Creb3l3
Gm525
9030025P20Rik
Kansl2
Klf7
Nabp1
Slc9a1
Klhl9
Sgf29
Eci1
Rps20
Fasn
Ccn2
H3c8
H2ac10
H4c8
Taf12
Gmeb1
Ier5l
Cd24a
Zfp963
Gapdh
Fam166a
Stpg3
Tmpo
Tubb4b
Slc34a3
Bclaf1
Pcnt
2610028H24Rik
Dele1
Tmem123
Vim
H2az1
Dnajb14
Poldip3
Znfx1
Trib3
Tex14
Nfkbia
Hspa1b
Birc2
Rcc1
Cds2
Tmem230
Pcna
Ppp1r10
Mrps18b
Atat1
Hspa5
Tob2
Dnajb12
Pcif1
Fam83a
H4f16
H2aj
Hsp90aa1
Nubp1
Jpt1
Amotl2
Gm13285
Gm13290
Gm13289
Ifnz
Gm13272
Sgk1
Prdx1
Usp18
Zfp119b
Ebi3
BC005537
Washc4
Aldh1l2
Hnrnph1
Aldoa
Mrpl35
Immt
Ppp4c
Sqstm1
Smarcc2
H2-DMa
Brd2
Csf1
Tmem129
Tacc3
Slbp
Cstb
Matr3
Slc25a4
Actg1
H3c2
H2ac4
H4c2
H4c1
H3c1
H1f1
Socs3
Knl1
Scamp4
Adat3
Zfp53
Btg1
Atp6v0c
Amdhd2
S100a10
Parp10
Grina
Plau
Nufip2
Tmem79
Smg5
Nup62
Il4i1b
Atf5
Gpr19
Alg1
H3c3
H2bc3
H1f2
Hmox1
Snx5
Mgme1
Tnfrsf12a
Thoc6
Hcfc1r1
Cldn6
Cldn9
Dnajb4
Fubp1
Fbxo31
Mphosph9
2810006K23Rik
Uba2
Gnb1l
Kdelr1
Grin2d
H3c10
H2bc13
H2ac13
H2bc14
Tmsb10
Nsrp1
Ahnak
Kat7
Swap70
Ctnnb1
Ermard
Nfe2l2
Gm13287
Gm13279
Gm13278
Gm13275
Gm13277
Gm13276
S100a6
S100a5
S100a4
Ndufaf3
Impdh2
Dalrd3
Amacr
Rab5b
Cdk2
H4c12
H2bc15
H2ac15
Gtf3c6
Pfkl
Slc35b2
Hsp90ab1
H3c11
H2bc22
H2ac22
H1f5
Acer3
Dnajb1
Napepld
Serinc1
Slc12a4
Slc38a2
Pdss2
Sike1
Usp10
Ostm1
Hsf1
Bop1
Fam227b
Dtwd1
Zfp598
Pik3r3
Actn4
Zfp433
Gm32687
Mpdu1
Eif4a1
Pkd1
Senp3
Tuba1c
Cse1l
Zfp36l1
Cltc
AU041133
Mettl25
Ccdc59
Rps27rt
Rab13
Seh1l
Tcirg1
Ndufs8
H2bc7
H2ac7
Shc1
Zmat2
Pygo2
Pbxip1
Wdr81
Tlcd2
Larp4
Spg11
Rad50
Kdsr
Pole4
Ier5
Tnfrsf1b
Commd10
Atf1
Rnd1
Rsph3b
Irf2bpl
Cldn34d
Dnaja1
Sod1
H2bc1
H2ac1
Aars2
Eed
Slc7a5
Slc16a1
Pofut2
Tubb2a
Hexb
Epc1
Armc5
9130023H24Rik
Tgfb1i1
Atxn10
Eef2
Dapk3
Pias4
Arrdc2
Trmo
Srsf6
Polg
Rnmt
Fam210a
Tmem80
Deaf1
Egr1
Ddx59
Cdkn2b
Tfrc
Lcmt2
Adal
Ncaph2
Lmf2
Tti2
Rrm2b
Psap
Iba57
Tmco1
Zfp672
Sh3bp5l
Mgat1
Bsg
Coq10a
Ankrd52
Ssbp1
Klf10
Hdhd2
Eapp
Eif5
Baiap2
Calm2
Nt5m
Cops3
Ano6
Slc29a3
Utp18
Mbtd1
Ubb
Tmem167b
Myl12a
Gm13288
Morc2a
Myo5a
Uvrag
Gcat
H1f0
Tab1
Zc3hav1
Utp14b
Acsl3
Cdc42ep1
Pkmyt1
Sephs2
Tango6
Ppp1r15a
Plekha4
Lmbr1l
Tmx4
Aacs
Fscn1
Grb2
Agpat2
Pmf1
Dse
Hspa8
H4c6
Thbs1
H3c7
H2bc9
Gls
Tmem175
Gak
Uqcr11
Mbd3
Rabif
Psmg4
Pithd1
Ifi211
Ranbp2
Zzz3
Inpp5k
Abcd3
Mok
Zfp839
Glo1
Lipt2
B2m
Lbh
Birc6
Nabp2
Slc39a5
Mtfr2
Eif3a
Atp5g2
Srek1
Rnf111
Phtf1
Pigq
Nhlrc4
Paip2
Ran
Pacc1
Nenf
Taf4
Rrn3
Mfsd5
Abraxas2
Eef1akmt2
Serinc3
Rplp1
Prrg2
Nosip
Cpt1b
Chkb
Prr12
Hint3
Ogfod1
Nudt21
Fadd
Arhgap28
P4hb
Arhgdia
Zfp959
Slc20a1
Cers5
Ptpa
Crat
Tcerg1
Tmem198b
Dnajc14
Ywhaz
Bhlhe40
Ptges3
Sowahc
Septin10
Mvb12a
Bst2
Cxcl1
Zfand5
Usp53
Ttc17
Reep3
Sirt4
Nfkbiz
H2bc4
H2ac6
Rabggtb
Msh4
Cox20
Otub1
E130311K13Rik
Ptk2
Gm9949
Adrb2
Gtf2a1
Rhof
Setd1b
Phf20
Plk2
Gtf2b
Klf2
Tekt2
Adprhl2
Ndrg1
Reep5
Lmna
Dync1h1
Prx
E2f7
Rsph3a
Plec
Rbm33
Azin1
Rnf216
Tdg
1190007I07Rik
Atf7
Lsm2
Hspa1l
Hspa1a
Efcab2
Rnf10
Coq5
Prkar1a
Pcmt1
Topors
Smim27
Ndufb6
Rps13
Glce
Nup43
Chac1
Zfp36l2
Dpagt1
Hmbs
H2ax
Uhmk1
Oaz1
Srsf5
Ctsl
Sec61a2
Epg5
Coa8
Bag5
Epha2
Slc26a6
Top2a
Tspan15
Uspl1
Rpl13
Srp68
Galr2
Zdhhc3
Exosc7
Rnpep
Josd1
Gtpbp1
Brms1
B4gat1
Cebpb
Slc25a3
Smdt1
Ndufa6
Septin11
Anxa2
Ptprk
Timeless
Mip
Eif1
H1f4
Vcl
Pnrc1
Pcbp1
Nsd3
Letm2
Cutc
Cox15
Zfp689
Specc1l
Dnajc19
Jpt2
Med1
Cdk12
Sptan1
Rps6
Arid5a
Dynll2
Kctd20
Pxt1
Sparc
Zkscan8
Olfr1366
Nop58
Pik3cb
Lrrc20
Tcim
Rpl10a
Yap1
Rufy1
Grin2c
Fdxr
Gdpd1
Pdxp
Tubb6
Birc5
Vps54
Mrfap1
Flot2
Dhrs13
Cmtr1
Wsb1
Plxdc1
Eprs
E4f1
Rtn4
Tmco6
Ndufa2
Ik
Rmdn1
Cpne3
Cavin3
Atp6v0e
Txlna
Slc5a6
Cad
Atraid
Myo1g
Zranb2
Ankhd1
Wbp4
Elf1
Flcn
Vps36
Ckap2
Rab11a
Gamt
Dazap1
Prune1
Mindy1
Itpr3
Slc2a1
Ep300
Rnf14
Ccdc62
Pgp
Mlst8
Bricd5
Caskin1
Pus7l
Irak4
Tsc22d1
Rhob
Rfx3
D17H6S53E
Lsm14a
Amd2
Amd1
Bag6
Apom
Ly6g5b
Gpank1
Csnk2b
Cav2
Uck2
Jund
Iqcn
Hnrnpa1
Cbx5
Pafah1b1
Hmgcr
Dhx9
Sp2
Rnpc3
Sesn1
Zdhhc17
Spag7
F2r
Cep57l1
Ubap2
Itga5
Zc3h6
Mbd6
Ddit3
Taf13
Skp1
Nuak1
Ksr1
Heatr4
Acot2
Ate1
Ccn4
Spen
Npm1
Cdr2l
Agbl5
Doc2g
Arrdc5
Asph
Ddx21
Tbx10
Nudt8
Spats2
Uhrf1
Cd80
Adprh
Nfe2l1
U2af1
Dusp10
1700056E22Rik
Lekr1
Cdca4
Dis3l
Snx15
Sac3d1
Mtap
Nprl3
Hba-x
Vwa1
Tmem88b
Ankrd65
Ulk2
Hspa9
Ube2g1
Plin2
Snai1
Aip
Rdh5
Cd63
Tmem134
Drg1
Serpine1
Zfp36
Plekhg2
Cap1
Naca
Tmem256
Plscr3
Nlgn2
Kdelr2
Sertad1
Slc17a7
Pih1d1
Aldh16a1
Cavin1
Polr3b
Rhbdl1
Nae1
Car7
Rhot2
Gsk3b
Ercc4
Zfp637
N6amt1
Zscan25
Hmga2
Gm13286
Gm13283
Gm13271
Angel2
Nol7
Fignl1
Srsf3
Slc18b1
Rps12
Gpx4
Parva
Zfp771
Dctpp1
Dtwd2
Hp1bp3
Nus1
Fxr2
Bbc3
Tymp
Sco2
Odf3b
Amn1
Arl14ep
Mrpl45
Txn1
9530077C05Rik
Anln
Chka
Ppdpf
Ipo7
Gxylt1
Cfap97
Mnd1
Cep43
Pdcd2
Zfp800
Hk1
Arl4d
Cited2
Rpl5
Trp53rka
Mcrip2
Zfp692
Hmgxb3
Fam122a
Zfp568
Wfikkn1
Mettl26
Snx3
Sp4
Phlda3
Psmd7
Cd164
Ttc7
Mrpl33
Map2k1
Bola1
Slc44a1
Tjp3
Pip5k1c
Ccnl1
Pdlim5
Zfp655
Rpl17
BC031181
Zglp1
Osbpl8
Ipmk
Cisd1
Kitl
Arhgap29
Ybey
Mcm3ap
Dph6
Pttg1ip
Nupr1
Plpp2
Zfp868
Tcf25
Nars
Timm13
Lmnb2
Wdr4
Ndufv3
Adss
Ubl7
Grpel2
Prpf38a
Orc1
Cflar
Ddah1
Stmn1
Tnrc18
H4c3
H1f6
Ppp1r12a
Fgfbp3
Btaf1
Maff
Hdac7
Eif6
BC029722
P2rx4
Clip1
Bbs10
Fads2
Pcbp3
Mrpl20
Ccnl2
Kpnb1
Tapbp
Pdcd6ip
Rnaset2b
Rnaset2a
Hjurp
A730008H23Rik
Ttc9c
Hnrnpul2
Gtf2f1
Spg20
Hddc2
Zbtb22
Zfp74
Rufy2
Zfp282
Sf3b5
Wdtc1
Oas1g
Cdkn1a
Btg2
Tarbp2
Npff
Map3k12
Hlcs
Grasp
Rad54b
Wdr45b
Csnk2a1
Osgin2
Tpt1
Zfp1
Rad23a
Calr
Elk4
Cdkn1b
Pank2
Secisbp2
Cks2
Esd
Focad
Zfp869
Gabpb2
Susd6
Camk2d
Slc25a46
Zfp119a
Mtres1
Scpep1
Zfp523
Ostf1
Nmrk1
Esyt1
Slc38a7
Mcm9
Ptma
Frmd6
Mrps18a
Cnpy3
Luzp1
Pyurf
Fubp3
Trmt112
Prdx5
Vgll3
Romo1
Nfs1
Herpud1
Rps8
Gars
Ube2z
Ppp2ca
Zfp213
Rpl7l1
Atf3
2310039H08Rik
Wipi1
Slc25a39
Ctnna3
Fam102a
Smad4
Ptcra
Zfp7
Zfp251
Fmn1
Sec61a1
Sp3
Mbnl1
Klhl24
Rps14
Tsg101
Mxra8
Aurkaip1
Plpp1
Tdp2
Acot13
Gm33989
Dstyk
H4c9
H2bc12
H2bc11
H2ac12
H2ac11