ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX620289 | NIH/3T3
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◣ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Tcstv3
Txndc11
Sspn
Pgk1
Hexb
Aldh9a1
Il31ra
Kpna1
Greb1
Cerk
Gm10710
Dchs2
Brox
Aida
Rsph3b
Dnah7b
Nkx2-6
Col6a6
Cldn34d
Abca3
Abca17
Cd209a
Olfr1274
Rsph3a
Zfp945
Oasl1
Osbpl1a
Tmem125
Olfr806
Gm525
E030030I06Rik
Ifna13
Asmt
Fbxw4
Gas1
Zfp791
Gm13285
Gm13290
Gm13289
Ifnz
Gm13272
Vmn2r4
Tmem18
Ddit4
Slc39a4
Cpsf1
Abhd6
H3c15
H3c14
H2ac19
H2ac18
Lrp6
H4c14
H3c13
H2bc18
H2bu2
Rnf187
Tle2
Klf7
H2bc21
H2ac21
H2ac20
Uchl5
Ro60
Pten
H3c11
H2bc22
H2ac22
H1f5
Zfp36l2
Hexim2
Lox
Gm13287
Gm13279
Gm13278
Gm13275
Gm13288
Nfat5
Zfp598
Npw
Arl8b
Zfp474
H1f3
H3c6
H2bc8
H2ac8
Cenpu
Tab1
H3c3
H2bc3
H1f2
H3c2
H2ac4
Champ1
Trim50
Fkbp6
Zfand5
Ubtfl1
Kpnb1
Igfbp4
Pknox1
H4c2
H4c1
H3c1
H1f1
Msmo1
Pald1
Lrriq3
Fpgt
Kcnh2
Nos3
Trdmt1
H4c12
H2bc15
H2ac15
Crybg1
Cltc
Trp53rkb
Col6a2
Mettl25
Ccdc59
Crebzf
Ccdc88a
Rubcn
Fyttd1
Rad54l2
Enc1
Lats2
Klf6
Mrpl44
Pdgfc
Adamts1
Ccng1
Speer4f1
H3c8
H4c6
H3c7
H2bc9
Eps15
Otud7b
Unk
H3f3b
H4c3
H1f6
Hmgcr
Zfp143
Cebpb
Rdh14
H2bc6
H4c4
H3c4
H2bc7
H2ac7
Tmem256
Plscr3
Nlgn2
Tle1
Actg1
Zfat
LOC666331
Gm11634
Nsun6
Arl5b
Hoxd3
Hoxd9
Hoxd8
Rps19bp1
Atf4
H3c10
H2bc13
H2ac13
H2bc14
Stx16
Ugt1a7c
Ugt1a6b
Errfi1
Dhx8
Cited2
Hdlbp
Mterf1a
Septin2
Man2b2
Ywhah
Mterf1b
Slc33a1
Mtf2
Gm13277
Gm13276
Mtap
Chd2
Plcd3
Acbd4
Scd2
D030056L22Rik
Prl2c2
Plk2
Ankrd40
Pacsin3
Arfgap2
Exosc6
Dock7
Uspl1
Aaas
Fra10ac1
Ssh2
Pigc
4930558K02Rik
Tmem17
Hmgcs1
Fam83a
Gtf2i
Lmbrd1
Mrpl39
Usp30
Svop
Tmem242
Cep135
Gm13286
Gm13283
Gm13271
Pkd2
H1f4
H4c9
H2bc12
H2bc11
H2ac12
H2ac11
Rnf6
Cdk8
Eef1a1
Gm3448
Gm3417
9030025P20Rik
Zc3h6
Srsf1
Calm1
Aacs
Atn1
Ttc39d
Srsf7
Tcea1
Lpcat2b
Btbd8
Ncam1
Dmap1
Frg2f1
Foxj3
Csf1
Atp2c2
Ctnnb1
H2ac10
H4c8
Rab33b
Cyp51
1700034E13Rik
Il6ra
Ccnl1
Gorasp2
Ndel1
Ifi211
Smg8
Mmaa
Apobec3
Ndufs7
Rps8
Ccn2
Shisa4
Smim26
Dtd1
Nemf
Cebpd
H4c11
Slc39a13
Wdr27
1600012H06Rik
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
Trp53rka
Ncbp2
0610012G03Rik
Mmadhc
Arf1
Trim28
Tab2
Zyg11b
Ubc
Sv2a
Sf3b4
Zfhx4
Morf4l1
Ep300
Top1
Galk2
Cops2
Ube2f
Trabd2b
Mrpl33
Pkn3
Hgsnat
Eef2
Dapk3
Pias4
Fosl2
Chordc1
Nup54
Rbm6
Zcrb1
Pphln1
Usp47
Erlec1
Asb3
Rps17
Pla2g4b
Jmjd7
AW549877
Them4
Ugt1a6a
Trib1
Mettl9
Heatr5a
Ankrd1
Erbb2
Cox20
Vpreb1
Top3b
Igll1
Dr1
Ciao3
Abhd1
Cgref1
Psmd3
2310022B05Rik
Mtdh
Ubtd2
Arid1a
Rbx1
Lpar1
Gcat
H1f0
Txnl1
Fem1b
Pfdn5
Myg1
Camk1
Zfp512
Trim65
Mrpl38
4931408C20Rik
H4f16
H2aj
Tuba1a
Sp3
Txn1
Tbc1d31
Atxn7l3b
Ssbp2
Hrob
Actb
Rdm1
Nfyc
Rrn3
Zfp959
Mrpl58
Zfp41
Kctd2
Atp5h
Fam227b
Dtwd1
Fn1
Ppp1r15b
Amotl2
Rnf11
Ago1
Pdk4
Medag
Tob1
Col1a1
Atp5g2
Rraga
Rps27a
Clhc1
Myo10
Gars
Dhx16
Ropn1l
Csf2ra
Nfkbil1
Ddx39b
Atp6v1g2
Rcn2
Fam120b
Faap20
Foxf2
Tgfbr3
Tmem131
Hmox1
Rhou
Ube2g2
Mrps2
1700007K13Rik
Metap1d
Arl4d
Ppp1r12a
Polr2m
Insr
B3gntl1
Eml1
Prl2c5
Hnrnph1
Raf1
Haspin
1700001O22Rik
Pdzrn3
Crocc2
Btg1
Mapkbp1
Col1a2
Ing5
Dtymk
Ptn
Rtn4rl1
Dph1
Mbnl1
Slc25a32
Dcaf13
Aasdh
Sit1
Ccdc107
Tapbp
Srp68
Galr2
Rgl2
Wls
Kansl3
Fer1l5
Nabp1
Arl14ep
Ppp2cb
Cacnb3
Mtmr14
Prcd
Cygb
Sfi1
Eif4enif1
Rps29
Lrr1
Ap1g1
Rhob
Resf1
Eif4e2
Chrng
Mideas
Bms1
Utp3
Cldn12
Efnb2
Sem1
Pcdh18
Ulk2
Tekt2
Adprhl2
Tle6
Anapc4
Phax
Aldh7a1
Bnc2
Efcab2
Eefsec
Eif5
Bbs5
Cr1l
Sppl2a
Dpy19l4
Elp1
Abitram
Nsf
Poldip3
Znfx1
Dnajc19
Ppp1r9b
Rps27l
Rpl31
Rps3
Lss
Ywhaz
Zfp710
Adamts14
Ccl9
Ccl6
Pdss2
Pdcd6ip
Zfp827
Wfdc21
Heatr6
Eef1g
Cpq
Polg2
Ddx5
Cep95
Timp2
Eci1
Pdia3
Catsper2
Traf7
Rab26
Thrb
Kansl2
Adrm1
Endov
Rapgef3
Efemp1
Six1
Flrt2
Larp4
Wdr70
Nup155
Vdr
Ube2g1
Ttc4
Wdr25
Wars
Pcbp1
Nsrp1
Cd80
Adprh
Srp19
Mapk1ip1l
Mnd1
Acat2
Bhlhe40
Pole3
Alad
4933430I17Rik
Hbp1
Cav1
Tymp
Sco2
Odf3b
Klhdc7b
Cdkn1a
F3
Vegfa
Pex2
Nr1d1
Tle4
Ephb3
Hif1a
Eif4g2
Ets1
Trpm7
Tomm7
Triobp
Mrpl21
Ighmbp2
Ythdf2
Zfp213
Fbxo7
Sqle
Nudt1
Bpifc
Kmt2e
Cd164
Hnrnpdl
Enoph1
Psma6
Yjefn3
Tssk6
Ndufa13
Bcar3
Agk
Tpk1
Insig2
Zdhhc17
Taf15
Slc26a8
Mapk14
C2cd5
Mmp28
Aqp6
Aqp5
Rps3a1
Setbp1
Lurap1l
Steap1
Htra2
Dqx1
Idi1
Sf3a3
Cav2
Efcab14
Taf4
Zc3h4
Fam32a
Cib3
Cdkn2aipnl
Synpo
Crlf3
Atad5
Eif4h
Aspn
Tas2r143
Tas2r135
Ptprg
Atf1
Irf2bpl
Ylpm1
H2bc4
H2ac6
Cdkn1b
Wac
Lrp11
Rpl21
Rnaset2b
Rnaset2a
Klhdc2
Tcte3
Ermard
Csrnp2
Dclre1b
Ap4b1
Tef
Rbm39
Mpp7
Fam166a
Stpg3
Nelfb
Fzd1
Zbtb4
Slc35g3
Polr2a
Wwox
Tex14
Srsy
Gm21828
Cxcl1
Eif1
Cwc22
Mt1
Mt2
Mat2a
Jund
Iqcn
Setd4
Cbr1
Fth1
Aadacl2fm1
Eapp
Ube2a
Prdx2
Junb
Hnrnpa2b1
Cbx3
Fyco1
Ier3
Flot1
Xcr1
Ppp1r10
Mrps18b
Atat1
Hspa8
Hspa5
Arf6
H4c17
Syngr1
Rpl3
Dusp1
Tsc22d1
Nfkbia
Kif2c
Egr1
Taf12
Gmeb1
Mcl1
Ppia
Ubb
Slc35e3
Acacb
Cox8c
Raly
Mdm2
Vim
Id3
Fam53c
Cdc25c
Ier2
Nr4a1
Ftl1
Bax
Gtf3c6
Sp1
Srsf2
Mfsd11
Ifrd1
Thbs1
Zyx
Fbxl18
Dusp5
Vcl
Chac1
Fus
Zfp36l1
Cirbp
Mettl23
Sirt4
Rplp0
Gcn1
Sdc4
Cdh12
Sqstm1
Slc38a2
Id1
Herpud1
Zfp949
Nfkbiz
Fam174c
Btg2
Tpt1
Pnrc1
Fos
Prdx1
Lmna
Scrib
Sympk
Txnip
BC005537
Dnajb4
Ccn1
Lima1
Pcif1
Calcoco1
Tuba1c
Srsf5
Odc1
Clec2d
Yeats4
Tmem167b
H2-DMa
Ptp4a1
Hsp90aa1
Tmem107
Slc35b2
Sgk1
Dpagt1
Sik1
Serpine1
Litaf
Slc14a2
Fubp1
Tpm1
Hmbs
H2ax
Rgs2
Srsf6
Olfr855
Olfr854
Brd2
Dnaja1
Rps20
Dnajb1
Myl12a
Ddx3x
Srsf3
Slc25a4
Palld
Hsp90ab1
Nudt13
Zfp36
Esr1
Tuba1b
Slc3a2
Ptgs2
Epc1
Tti2
Ddx23
Tiparp
Tmem123
Car5a
Banp
Nup62
Il4i1b
Atf5
Ints6
Vmn2r102
Ccl7
Serinc3
B2m
Zfp207
5730455P16Rik
Cdc42
Tecpr1
Rptor
Zfp513
Snx17
Eif2b4
Plekhg2
Pabpc1
9430015G10Rik
Erdr1
Zfp869
Usp4
Gpx1
Phlda1
Rcc1
Ccl2
1810013L24Rik
Tra2a
Gtf2b
Setd5
Calm2
Pole4
Dync1i2
Cnot1
H2-L
H2-D1
Dstn
Itga5
Mpdu1
Eif4a1
Atp5g1
Napepld
Phlda3
Hnrnpab
Tmem50a
Syf2
Rsrp1
Insig1
Myh9
Itgb1
Smim10l1
Med1
Cdk12
Phf12
Ncl
Rsrc2
Kntc1
Ier5
Ppbp
Amn1
Selenop
Rap1b
Stat3
Zfp963
Pdlim5
Flna
Emd
Sde2
Gm3435
Coq10b
Shc1
Ppp1r15a
Plekha4
G3bp1
Atox1
Tmsb4x
Trib3
Scaf1
Rras
Tmed2
Rilpl1
Urgcp
Lag3
Pus1
Ep400
Hmgb2
Nfe2l2
Zfp1
Tmem129
Tacc3
Slbp
Chmp4b
Gapdh
Rnf10
Coq5
Esyt2
Prcc
Zfp868
Mbd6
Ddit3
Pkd1
Jun
Crem
Ptms
Retsat
Elmod3
Mknk2
Rad23a
Slc25a3
Slc18b1
Socs3
Zfp655
Wsb1
Pim3
Wdr81
Tob2
Calr
Mrpl20
Ccnl2
Matr3
Atp6v0c
Amdhd2
Cxcl5
Tmsb10
Gem
Senp3
Tctex1d4
Btbd19
Nufip2
Sptan1
Pds5b
N4bp2l2
Rps12
Zbtb37
Rnft1
Uqcc3
Trmt10c
Pcnp
Actr3
Wnk1
Eif3a
Eif3c
Cfl1
Ppp1r2
Gls
Nip7
Irf1
Cog8
Opa1
Baiap2
Kmt5b
Adnp
Ywhag
Fstl1
Teddm1a
Glul
Dgat1
Tra2b
Taf13
Rpl10a
Pprc1
Pdlim7
Zbed5
Phkg1
Chchd2
Rheb
Gtf2a1
Ppig
Usp48
Son
Gm36712
Gart
Snx5
Mgme1
Egr2
Ugdh
Spen
Piezo1
Map2k2
Creb3l3
Sec61a1
Gadd45g
Rabgef1
Bach1
Arrdc2
Ctsl
Rnf19b
Atp2a2
Ldha
Aff4
Slc9a1
Fosb
Birc2
Ptpn6
Grcc10
Flad1
Cks1b
Ptpn2
Csnk1a1
Chrac1
Hnrnpa1
Cbx5
Zfp866
Map1lc3b
H2-K1
Hnrnph3
Tlcd2
Gadd45a
Ddx59
Cds2
Lbh
Klf2
Mthfd2
Mob1a
Ptma
Gm14595
Gm14590
Sfpq
Slc2a1