ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9144817 | 3T3-L1
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◣ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Errfi1
Zbtb4
Slc35g3
Polr2a
Arf6
Ier3
Flot1
Cxcl1
Mt1
Mt2
Egr1
Zyx
Eif1
Id3
Cwc22
Dusp1
Vcl
Actg1
Fos
Tex14
Rps19bp1
Atf4
Sdc4
Polg2
Ddx5
Cep95
Klf7
Actb
Fbxl18
Prdx2
Junb
Mat2a
Hspa8
Fth1
Hnrnpa2b1
Cbx3
H4bc24
H2bc23
H2ac24
H2ac23
H4c18
Mdm2
Ier2
Ppp1r10
Mrps18b
Atat1
Ptp4a1
Btg2
Id1
Jund
Iqcn
Nfkbiz
Vdr
Cebpd
Tsc22d1
Nr4a1
Sik1
Zfand5
Raly
Eef1a1
Cited2
Tuba1c
Coq10b
Ppia
Palld
Thbs1
Flna
Emd
Ptgs2
Dusp5
Adamts1
H4c3
H1f6
Rgs2
Dstn
Taf12
Gmeb1
Srsf5
Myl12a
Zfp36
Plekhg2
Ubb
Ubc
Eapp
Cebpb
Itga5
Ccl7
Ccl2
Sgk1
Fn1
Fam53c
Cdc25c
Myh9
Vim
H3c15
H3c14
H2ac19
H2ac18
Ccn1
Cldn34d
Nfkbia
Cdkn1a
Ccnl1
Btg1
H3c11
H2bc22
H2ac22
H1f5
Col4a2
Col4a1
Litaf
Unk
H3f3b
Ctnnb1
Poldip3
Pdlim5
Tpt1
Tmem123
Acta2
Rap1b
H4c14
H3c13
H2bc18
Ifrd1
Hspa5
BC005537
Itgb1
Herpud1
Cdc42
Ttc39d
Srsf7
Ppp1r12a
Sqstm1
Prnp
Prn
Tra2a
Sirt4
Mcl1
Dnajb4
Gtf3c6
Ppp1r15a
Plekha4
H4f16
H2aj
Tmem107
Clec2d
Uap1
Cirbp
Fam174c
Stat3
Rnf19b
H2-L
H2-D1
Tpm4
Slc38a2
H2bc6
H4c4
H3c4
H2bc7
H2ac7
Serpine1
Srsf3
Rplp0
Gcn1
Jun
Pdlim7
Pakap
Rhob
Cfl1
Ywhaz
Ptges2
Lcn2
1110008P14Rik
Crem
Fstl1
Egr2
Fus
Plk2
Rheb
Ddit4
H3c3
H2bc3
H3c2
H2ac4
H4c2
H4c1
H3c1
Calu
1810013L24Rik
Ube3b
Kctd10
Slc25a3
Amn1
Lmna
Srsf6
F3
Elovl5
Tiparp
Top1
Wdr81
Tlcd2
H2bc8
H2ac8
Dnaja1
Cpeb2
Zfp36l1
Tmsb4x
Msrb3
Cald1
Fubp1
Filip1l
Spindoc
Dnajb1
Ier5
Slc35e3
Tada3
Arpc4
Arl4d
Fosb
Glrx
Klf6
Lima1
Tob1
Scaf1
Rras
Phlda3
Rnf34
Ddx3x
H4c9
H2bc12
H2bc11
H2ac12
H2ac11
Txndc11
Rbks
Babam2
Rpl10
Txnip
Ftl1
Bax
Wdr1
H1f3
H3c6
Csrnp1
Hsp90aa1
Rsrc2
Kntc1
Kmt2e
Atp6v0c
Amdhd2
Rab7
Nabp1
Egr3
Efcab2
Zfp36l2
Tmem167b
Taf13
Cstf3
Syngr1
Rpl3
Timp2
Zbed5
Phkg1
Chchd2
Fkbp5
Actr3
Selenop
Hif1a
B2m
Oat
Nfat5
Yeats4
Slc25a4
Hnrnph1
Wsb1
Rnft1
Klf2
H4c17
Irs2
Gadd45g
Sptan1
Pitpna
Aff4
Esyt2
Mob3a
Izumo4
Rbm39
Nagk
Pnrc1
Cct2
Prkar1a
Rgl1
Arpc5
Rsu1
Slc35b2
Hsp90ab1
Lrrc8a
Pkd1
Rpl10a
Tcstv3
Tpm1
Gpx4
Pabpc1
Sik2
H2-DMa
Brd2
Zfp869
Adnp2
Sfpq
Smim10l1
Slc2a1
Niban2
Rps20
Rab11b
Fgfbp3
Btaf1
Mbnl1
Sart3
Iscu
Ell2
Hspa9
Opa3
H3c10
H2bc13
H2ac13
H2bc14
Ddx19b
Aars
Mafk
Armc12
Ncl
Nfe2l2
S100a10
Rhoj
Ptpn2
Rpl9
Lias
Ptma
Aff1
Ints6
Ppp1r2
Tmem259
Cnn2
Abca7
Fosl2
Gem
Sub1
Larp4
Srsf2
Mfsd11
Mettl23
Ctsl
Ugdh
Maff
Slc3a2
Eef2
Dapk3
Pias4
Sox9
Etf1
Ctnnd1
Btbd18
Rnd3
Srf
Cul9
Chac1
Tuba1a
Odc1
Usp38
Hipk3
Sf3b1
Gapdh
E030030I06Rik
Cltc
Homer1
Ranbp2
Gm3448
Gm3417
Tcte3
Ermard
Eif4g2
Ube2h
Zfp644
Id2
Calm1
Resf1
Ppp2cb
Med1
Cdk12
AW549877
Mpdu1
Eif4a1
Senp3
Bach1
Pcif1
Ywhag
H2-K1
Nup62
Il4i1b
Atf5
Prrc2a
Ubald1
Mgrn1
Sra1
Slc35a4
Apbb3
Mknk2
Dgat1
Prdx1
Rad23a
Calr
Ero1a
Ahnak
Golph3
Usp4
Gpx1
Jak1
Hnrnpab
Tob2
Pdk4
Arglu1
Znfx1
Trib1
Tra2b
Mideas
Tmem175
Gak
Asns
Myl6b
Myl6
Slc25a25
Tmed5
Ccdc18
Kif2c
Sbf2
Ulk2
Eif5
Serinc3
Parva
Erdr1
Map3k6
Pole4
Trib3
Sp1
Urgcp
Kdm7a
Uhmk1
Slc25a11
Rnf167
Pfn1
Fermt2
Eno3
Malsu1
Brox
Aida
Klf9
Zeb1
Rabgef1
Foxj2
Eif4ebp3
Hdlbp
Saraf
Leprotl1
Eprs
Atf3
Hexim2
Nfkbil1
Ddx39b
Atp6v1g2
Por
Zfc3h1
Thap2
Zfp1
Csnk1a1
H1f1
Arf4
Tpp2
Ube2j1
Rasa3
Arih1
Alyref2
Sesn2
Cul1
Coro1c
Zfp655
Cry2
Ifi211
Rps6
Ppard
Rnf10
Coq5
Tcf25
Pak2
Dock9
Lpp
Slc25a5
Ercc5
Ndel1
Hspa4
Pafah1b2
Zmat1
Sik3
Eif2s2
H1f4
Nptn
Irf2bp2
Gsto1
B3gnt2
Tubb6
Rybp
Calm2
Aven
Nars
Rbm3
Fgfr1
Pgap2
Nup98
Eif3c
Srrm2
Ankrd11
Sat1
Epc1
Flcn
Slc7a1
Gls
Actr8
Nfil3
Aplp2
Selenok
Mlxip
H3c8
H2ac10
H4c8
Zc3h12a
Rcc1
Usp16
St7
Teddm1a
Glul
Son
Gm36712
Gart
Tmem87b
Rpl12
Lrsam1
Gadd45b
Pdha1
Birc3
Phc2
Zfp330
Zfp143
Pim3
Gpat4
Tm7sf3
Med21
Il6
Rps27rt
Rab13
Ccdc85b
Fosl1
Cdc37l1
Rock2
Adrm1
Zswim6
Thbd
Cd44
Enah
Rab21
Zmat2
Nr4a2
Baiap2
Rpgrip1
Hnrnpc
Rpl19
Cacnb1
Pik3r1
Hmga2
Rpl22l1
Xrcc4
Tmem167
Hmgcr
Bclaf1
Lrrc58
Gm36028
Lag3
Ptms
Rbbp6
Taf1d
4931406C07Rik
Lamp2
Zfp963
Rrn3
Rpl15
Nkiras1
Dhrs9
Pcbp1
Insig1
Myc
Pif1
Plekho2
Mnt
Mapk1
Slc39a14
Prune2
Pafah1b1
Hnrnpdl
Enoph1
Fmc1
Rpsa
Uspl1
Cap1
Morc2a
Sipa1l1
Setd5
Cd80
Adprh
Mapkapk2
Igfbp7
Hsd17b12
Slc7a5
Paxip1
Arf1
Cd248
Peak1
Hmg20a
Hexim1
Id4
Ubr5
Itprip
Taf4
Rpl17
BC031181
Bcl7b
Rcn2
Ccng1
Abracl
Hnrnpa1
Cbx5
Wbp11
Smco3
BC049715
Angptl4
Wnk1
Tceal8
Ep300
Cst3
Fasn
Srxn1
Arl2bp
Agbl5
Idh3b
Twf1
Frs2
Ces1a
Pkm
Bri3
Pcf11
Pskh1
Nrn1l
Nfkb2
Tsc22d3
Mob4
Tnfaip2
Hsd17b7
Csf1
Slc18b1
Rps12
Kdm6b
Cul3
Zfp207
5730455P16Rik
Tmem50a
Syf2
Rsrp1
Caprin1
Tspyl2
Trmt10c
Pcnp
Slc9a1
Tnfrsf1b
Sertad1
Lox
Rab42
Serbp1
Trp53inp1
Sipa1l2
Nrbp1
Rccd1
Pdcd6ip
Dot1l
Camk2d
Wdr26
Adpgk
Sugct
Mplkip
Tuba1b
Piezo1
Hnrnpa0
Rab22a
Hnrnpl
Mrpl20
Ccnl2
Kctd5
Brwd1
Hnrnpa3
Ahctf1
Plec
Serpinh1
Tax1bp1
Cldn12
Bag3
Tmem129
Tacc3
Slbp
Dhx9
Rab43
Csde1
D5Ertd579e
H2bc4
H2ac6
Ets2
Kif5b
Elk4
Dcbld2
Ttpal
Ppbp
Cxcl5
Zbtb37
Eif3a
Arpc2
Fam76a
Acyp2
Wdfy1
Tatdn2
Styxl1
Mdh2
Brd4
Mtch1
Gorasp2
Usp53
Nufip2
Ttyh2
Rpl38
Zfp131
Elk1
Cfp
Adnp
Trip6
Srrt
Arhgap23
Ddx59
Eif4g1
Rnf19a
Actn4
Csrnp2
Mocs3
Dpm1
Tanc1
Actn1
Zbtb16
Atp2a2
Nsun6
Arl5b
Stk40
Lsm10
Nemf
Socs3
4930415O20Rik
Ccnt1
Creb1
Mrpl33
Zfp568
Patl1
Ctnna1
Gramd1a
Txnrd1
Eid3
Phlda1
Pdss2
Cpsf6
Zfp692
Cyth2
Itgav
Ddx50
Cbx4
Arhgap10
Mbnl2
H1f2
Gars
Oaz1
Exoc5
Ap5m1
Hspe1
Hspd1
Kctd18
Mpp7
Plxdc1
H3f3a
Arl8a
Ilf2
Zfp706
Npr1
Clk1
Zfp948
Rfx3
E4f1
Hspa1b
Ppp1r15b
Net1
Heg1
H2bc21
H2ac21
H2ac20
Sp3
Zbtb11
Rpl24
Crk
Eef2k
Trp53inp2
Map4k3
Rmi1
Hnrnpk
Arl8b
Rps10
Nrbf2
Hmgb2
Zc3h15
Etnk1
Foxk1
Ldha
Mthfd2
Mob1a
Bcl6
Pitrm1
Tmem79
Smg5
Tpst2
Dnaja2
Med14
Zcrb1
Pphln1
Nars2
Hnrnph3
Pbld2
Phf20l1
Brd1
Zfp866
Rab5if
Ctdsp1
Azin1
Tyw1
Sbds
Skp1
Mapre1
Gmeb2
Ucp2
Strap
Midn
Atp5d
Atp6v0d1
Agrp
Ptpn23
Cbarp
Mbd6
Ddit3
1700001P01Rik
Rpl23
Trim39
Rfx1
Raph1
Axin1
Cttnbp2nl
Fkbp1a
Slc5a5
Rpl18a
Map1s
Il6st
Chrac1
Cul5
Ppp2ca
Znrf1
Ccny
Ndufs1
Eef1b2
A630095N17Rik
Usp36
Dnajb2
Helz2
Txnl1
Twist2
Senp2
Frmd6
Tpcn2
Sit1
Ccdc107
Ddx17
Lims1
Rexo2
Eif4h
Map4k4
Vegfa
Gstp2
Gstp1
Fam53a
Usp7
Ube2d3
Lonp1
Catsperd
Syap1
Knl1
Slc17a7
Pih1d1
Aldh16a1
Relb
Tank
Bzw1
Osmr
Anxa1
Yaf2
Zfp868
Srsf1
Tm7sf2
Luc7l2
Cdr2l
Rbm15b
Manf
Ptpn11
Fndc3b
Fau
Aoc2
Znhit2
Mrpl49
Psme3
Setd2
Polr2m
Topors
Smim27
Ndufb6
Capza2
Atp13a3
Rft1
Spag6
Ptx3
Tm9sf3
Psma3
Med13
Tmed10
Srrd
Hps4
Galnt2
Tnc
Fscn1
Flnc
Alas1
Ccnyl1
Fdx1
Rhoc
Ppm1j
Usp32
Csnk1g2
Psmd14
Mylip
Noct
Epc2
Atxn2
Rpl27a
Rab8a
Ap1g1
Slc10a7
Rbmxl1
Cds2
Tmem230
Pcna
Cnbp
Fbxo4
Utp4
Derpc
Chtf8
Trim24
Tm9sf4
Ssu72
Slc25a33
Npm1
Hmgn1
Tgfbr3
Snapc1
Fam133b
Dusp11
Vamp2
Smad1
Rnf111
Nt5m
Cops3
Khdc4
Vapa
Plin5
Plin4
Per1
Map3k20
Pdcl3