ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX620287 | NIH/3T3
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◣ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Tcstv3
Txndc11
Sspn
Il31ra
Aldh9a1
Hexb
Kpna1
Greb1
Cerk
Dnah7b
Pgk1
Gm10710
Dchs2
Rsph3b
Errfi1
Col6a6
Nkx2-6
Rsph3a
Egr1
Cldn34d
Actg1
Ccn1
Zfp945
Thbs1
Brox
Aida
Cd209a
Serpine1
Olfr1274
Actb
Ccn2
Plk2
Ubc
Tmem125
Osbpl1a
Dusp1
Tmem18
Ptgs2
Nr4a1
F3
Gm525
Olfr806
Flnc
Dusp5
Abhd6
E030030I06Rik
Oasl1
Ifna13
Fos
Zfp791
Fbxw4
Asmt
Lox
Vim
Phlda1
Vmn2r4
Gm13285
Gm13290
Gm13289
Gm13287
Gm13279
Gm13278
Gm13275
Gm13288
Atp5g1
Ier5
Gadd45g
Abca3
Abca17
Pknox1
Sgk1
Speer4f1
Ier2
Pald1
Prkca
Fn1
Setd4
Cbr1
Cox8c
Ifrd1
Btg2
Hgsnat
Zfp598
Npw
Wwox
Msmo1
Dcaf5
Prdx2
Junb
Acta2
Fosl2
Ubtfl1
Ier3
Flot1
Id3
Zc3h6
Trib1
Myh9
Id1
Frmd6
Klf6
Zfand5
Unk
H3f3b
Actr3
Cuedc1
Csf1
Eif1
Ccnl1
Cdca7
Mat2a
Dnajb4
Fubp1
Jun
Rnft1
Tob1
Mmaa
Itga5
Vcl
Lbh
Ddx1
Syn2
Plcb1
Sfi1
Eif4enif1
Nrbp1
Fer
Tspan9
Hmgcr
Mt1
Mt2
Mcl1
Mtdh
Tpm1
Shc1
Egr2
Flad1
Cks1b
Lenep
Tubb6
Rel
Ncbp2
0610012G03Rik
Palld
Sf3b1
Rps6
Hmox1
Itgb1
Esyt2
Uhrf1bp1l
Rps19bp1
Atf4
Camk2d
Arpc2
Ifnz
Rheb
Gm13272
Cdkn2aipnl
Trim50
Fkbp6
Rnd3
Rraga
Wdr81
Tlcd2
Noct
Klf7
Rnf11
Ccdc88a
Gm13276
Mideas
Gm13277
Zfp207
5730455P16Rik
Ahnak
Egr3
Ttc4
Kansl2
Prss23
Prl2c2
Btg1
Srxn1
Klf10
Taf1d
4931406C07Rik
Tbc1d31
Gdf3
Mtf2
Drap1
AI837181
Calm2
Fads2
Gm3448
Gm3417
9030025P20Rik
Rtn4
Tjp2
Phlda3
Arc
Dgat1
Tnfrsf12a
Thoc6
Hcfc1r1
Cldn6
Cldn9
Wtip
Tcte3
Ermard
Zscan21
Epb41l2
Cartpt
Cldn12
Tada1
Wdr1
Jmjd1c
Lurap1l
Cltc
S100a6
S100a5
S100a4
Nabp1
Ywhag
Mterf1b
Zfat
Gm3435
Top1
Lmna
Tnc
S100a3
Zbtb4
Slc35g3
Polr2a
H4f16
H2aj
H3c15
H3c14
H2ac19
H2ac18
H4c14
H3c13
H2bc18
H4bc24
H2bc23
H2ac24
H2ac23
H4c3
H1f6
Tex14
Srsy
Gm21828
H2bc6
H4c18
Cxcl1
H3c3
H2bc3
Cwc22
H4c4
H3c4
Polg2
Ddx5
Cep95
H2bc7
H2ac7
H1f2
H1f3
H3c6
H2bc8
H2ac8
Jund
Iqcn
Fth1
Csf2ra
Aadacl2fm1
H3c11
H2bc22
H2ac22
H1f5
H1f4
Eapp
Eef1a1
Ube2a
Hnrnpa2b1
Cbx3
H3c8
H4c9
H2bc12
H2bc11
H2ac12
H2ac11
Fyco1
Xcr1
Ttc39d
Srsf7
Ppp1r10
Mrps18b
Atat1
Hspa8
Hspa5
Arf6
H4c17
Syngr1
Rpl3
Tsc22d1
Ctnnb1
Nfkbia
Nemf
Kif2c
H2ac10
H4c8
Taf12
Gmeb1
H4c6
Poldip3
Ppia
Ubb
Slc35e3
H3c2
H2ac4
Acacb
Raly
Mdm2
H2bc21
H2ac21
H2ac20
Fam53c
Cdc25c
Ftl1
Bax
Zfp143
H4c2
Gtf3c6
Sp1
H4c1
Ddit4
H3c1
Arl4d
H3c10
H2bc13
H2ac13
Cited2
Calm1
Srsf2
Mfsd11
Zyx
Adamts1
Fam227b
Dtwd1
Fbxl18
H2bc14
Chac1
Cebpb
Fus
Zfp36l1
Cirbp
Mettl23
Sirt4
Rplp0
Gcn1
Sdc4
Cebpd
Cdh12
Sqstm1
Slc38a2
Herpud1
Cdkn1a
Zfp949
Nfkbiz
Fam174c
Tpt1
Pnrc1
Zfp36l2
Prdx1
Ulk2
Scrib
Sympk
Ppp1r12a
Txnip
BC005537
Znfx1
Lima1
H1f1
Pcif1
Calcoco1
Tuba1c
Uspl1
Srsf5
Odc1
Efcab2
Clec2d
Yeats4
Tmem167b
Nfat5
H2-DMa
Ptp4a1
Hsp90aa1
Tmem107
Slc35b2
Dpagt1
Rps29
Lrr1
Tuba1a
Sik1
Rbm39
Litaf
Slc14a2
H2bc4
H2ac6
Hmbs
H2ax
Rgs2
Srsf6
Olfr855
Olfr854
Brd2
Dnaja1
Ap1g1
Rps20
Dnajb1
Myl12a
Ddx3x
Pcbp1
Srsf3
Slc25a4
Hsp90ab1
Nudt13
Zfp36
Esr1
Tuba1b
Slc3a2
Ywhaz
H3c7
H2bc9
Epc1
Tti2
Ddx23
Rhob
Tiparp
H4c11
Tmem123
Car5a
Banp
Nup62
Il4i1b
Atf5
Timp2
Ints6
Vmn2r102
Ccl7
Serinc3
B2m
Hnrnph1
Cdc42
Tecpr1
Rptor
Zfp513
Snx17
Eif2b4
Plekhg2
Pabpc1
Gorasp2
9430015G10Rik
Erdr1
Zfp869
Usp4
Gpx1
Eif5
Rcc1
Ccl2
Mrpl44
1810013L24Rik
Taf4
Tra2a
Gtf2b
Setd5
Pole4
Dync1i2
Kmt2e
Cnot1
H2-L
H2-D1
Col1a1
Dstn
Mpdu1
Eif4a1
Larp4
Napepld
Hnrnpab
Tmem50a
Syf2
Rsrp1
Insig1
Smim10l1
Med1
Cdk12
H4c12
H2bc15
H2ac15
Phf12
Ncl
Hexim2
Rsrc2
Kntc1
Ppbp
Amn1
Selenop
Rap1b
Stat3
Zfp963
Pdlim5
Flna
Emd
Sde2
Coq10b
Aaas
Ppp1r15a
Plekha4
Lmbrd1
G3bp1
Atox1
Tmsb4x
Trib3
Scaf1
Rras
Tmed2
Rilpl1
Urgcp
Lag3
Gcat
Pus1
Ep400
Hmgb2
Nfe2l2
Zfp1
Tmem129
Tacc3
Slbp
Chmp4b
Gapdh
Hif1a
Rnf10
Coq5
Ndufs7
Prcc
Resf1
Zfp868
Mbd6
Ddit3
Pkd1
Crem
Ptms
Retsat
Elmod3
Mknk2
Rad23a
Slc25a3
H1f0
Eef2
Dapk3
Slc18b1
Socs3
Zfp655
Wsb1
Rdm1
Pim3
Tob2
Calr
Mrpl20
Ccnl2
Matr3
Atp6v0c
Amdhd2
Cxcl5
Tmsb10
Gem
Senp3
Tctex1d4
Btbd19
Nufip2
Sptan1
Pds5b
N4bp2l2
Rps12
Pias4
Nfkbil1
Ddx39b
Atp6v1g2
Zbtb37
Uqcc3
Trmt10c
Pcnp
Wnk1
Eif3a
Mettl25
Ccdc59
Eif3c
Eif4g2
Cfl1
Crebzf
Ppp1r2
Gls
Nip7
Irf1
Cog8
Opa1
Baiap2
Kmt5b
Adnp
Fam166a
Fstl1
Teddm1a
Glul
Tra2b
Taf13
Rpl10a
Stpg3
Pprc1
Pdlim7
Zbed5
Phkg1
Chchd2
Csrnp2
Gtf2a1
Ppig
Usp48
Son
Gm36712
Gart
Snx5
Mgme1
Ugdh
Spen
Piezo1
Map2k2
Creb3l3
Sec61a1
Pdss2
Trp53rkb
Rabgef1
Bach1
Arrdc2
Ctsl
Rnf19b
Atp2a2
Ldha
Aff4
Slc9a1
Slc39a4
Fosb
Cpsf1
Birc2
Raf1
Ptpn6
Grcc10
Ptpn2
Csnk1a1
Chrac1
Srsf1
Hnrnpa1
Cbx5
Zfp866
Map1lc3b
H2-K1
Ndel1
Hnrnph3
Morf4l1
Gadd45a
Ddx59
Cds2
Sp3
Wdr70
Klf2
Mthfd2
Mob1a
Ptma
Gm14595
Gm14590
Sfpq
Slc2a1
Kdm6b
Slc39a10
Phf23
Gabarap
Dvl2
Slc39a1
Ep300
Rock2
Nfyc
Homer1
Kctd5
Ubxn1
Nup155
Arl14ep
Mylip
Idh3b
Tmem230
Pcna
Txnl1
S100a10
Tinf2
Nedd8
Ncor1
Gmpr2
Pdf
Sod1
Eif2b5
Gsto1
Mrpl45
Mbnl1
Txn1
Fitm2
Arntl
Nsrp1
Zc3h10
Rpl41
Chmp6
Phb
Nsd3
Letm2
9530077C05Rik
Arih1
Vdr
Sub1
Dynll1
Pigl
Cpeb2
Hmgn2
Cd80
Adprh
Gadd45b
Gpx4
Pbld2
Dusp2
Astl
Vegfa
Hipk3
Atp6v1h
Ifi211
Sppl2a
Ufl1
Selenot
Htra2
Dqx1
Fgfbp3
Btaf1
Zfp637
Galk2
Cops2
Wbp4
Elf1
Ptges2
Gabpb2
Fasn
Sepsecs
Eif4e2
Chrng
Sned1
Rabggtb
Msh4
Hdlbp
Lrrc8a
Polr2m
Col4a2
Col4a1
Slc5a3
Mrps6
Aacs
Rpl9
Lias
Tmem175
Slc25a32
Pten
Gak
Dcaf13
Rab5if
Zbtb11
Rpl24
Gstp2
Gstp1
Rps3a1
Ets2
Tm7sf2
Nsfl1c
Hexim1
Npm1
Sharpin
Maf1
Hnrnpa3
Cyc1
Prrc2a
Tmem87b
Parva
Map2k4
P4hb
Arhgdia
Ube2j2
Kdm5a
Ccdc77
Tmpo
Rps8
Rab11b
Ppm1a
Mtg1
Stau1
Tut7
Commd1
Cct4
Adpgk
Rpl17
BC031181
Sik2
Ubald1
Mgrn1
Rmi1
Hnrnpk
Pif1
Pafah1b1
Tubb4b
Slc34a3
Atf1
1700001P01Rik
Rfx3
Hspa4
Dusp11
4930415O20Rik
Ppp6c
Ap2m1
Ero1a
Luc7l
Fam234a
Ranbp2
Slc7a5
Cct8
Gpr84
Tbcd
Nol12
Ndfip1
Lgals1
Ccng1
Gm35339
Sec62
Dpy19l4
Mmadhc
Rabl6
Pkm
Ccdc183
Arl8b
Psmd7
Pnp
Kat7
Eci1
Saraf
Leprotl1
Fkbp1a
Aldoa
Rab1a
Lrif1
Brwd1
Adnp2
Ccdc9
Mrpl35
Immt
Plxdc1
P4ha1
Mrpl19
Dcp1a
Spindoc
Fam43a
Atp5g2
Rps27rt
Rab13
Zcwpw2
Oat
Cct2
Azi2
Paxip1
Clk1
Cox20
Tomm34
Stk4
Rbks
Babam2
Tcf25
Fbxl3
Cap1
H2bu2
Hspa9
Rfc4
Jak1
Mterf1a
Gars
Calu
St3gal2
Ndufb8
Hif1an
Tab1
Tle3
Plec
Ift46
Arcn1
Tmem115
Angptl4
Nop14
Grk4
Plekho2
Rrn3
Rab7
Zglp1
Trmt44
Tkfc
Ddb1
Acox3
Btrc
S1pr4
Ncln
Pex14
Dffa
Crebl2
Uhmk1
Phf20l1
G3bp2
Ndufa9
Ctdsp1
Akap3
Rab33b
Ctdp1
Ankrd11
Ttc41
Hsp90b1
Elk4
Anln
Ywhae
Slc25a11
Rnf167
Filip1l
Tmem79
Smg5
Lcn2
Arl15
1110008P14Rik
Rdh14
Mrpl39
LOC666331
Gm11634
Tada3
Chka
Arpc4
Atf6
Srrm2
Ndufs4
Ppp1ccb
Ppp1cc
Pura
Knl1
Rnf34
Snx18
Rpl5
Rab42
Serbp1
Degs1
Fem1b
Trir
Tnpo2
Irs2
Flcn
Phf2
Cul1
Sec24a
Sar1b
Ttyh2
Rpl38
Notch2
Secisbp2l
Gnas
Gmfb
Cgrrf1
Ccnt1
Arf1
Cotl1
Pitpna
Adrm1
Sugct
Mplkip
Caprin1
Oga
H3f3a
Tsnaxip1
Ranbp10
Tm9sf3
Trmo
Puf60
Rplp1
Lrp6
AW549877
Rprd2
Cd164
Prnp
Prn
Med6
Arf4
Zdhhc1
Niban2