ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3200440 | mESC derived haemogenic endothelium
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX9144814: 3T3-L1

◢ SRX9144815: 3T3-L1

◢ SRX9144816: 3T3-L1

◢ SRX9144817: 3T3-L1

◢ SRX104410: ES cells

◢ SRX11717263: ES cells

◢ SRX11717264: ES cells

◢ SRX11717265: ES cells

◢ SRX11717266: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◣ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◢ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Srsy
Gm21828
Ube2a
Cldn34d
Arntl
Tle3
Txndc11
Tcstv3
Cnot1
H1f3
H3c6
H2bc8
H2ac8
H4c6
Gpr84
Ska2
Prr11
Nkx2-6
H3c10
H2bc13
H2ac13
H2bc14
Ttc41
Hsp90b1
Bcar1
Katnb1
Gm2237
Erdr1
H4c9
H2bc12
H2bc11
H2ac12
H2ac11
Sp2
H3c11
H2bc22
H2ac22
H1f5
Prkaca
Kmt2a
H3c8
H2ac10
H4c8
H3c7
H2bc9
Lmna
Dolpp1
H3c3
H2bc3
H1f2
Zfp869
Taf12
Gmeb1
H3c15
H3c14
H2ac19
H2ac18
Cry1
Ncl
Tle6
H2bc6
H1f4
Eapp
Calr3
1700030K09Rik
Arrdc4
Ctnnb1
Tex14
Nfyc
Tomm34
Stk4
H2bc4
H2ac6
Sirt4
H4f16
H2aj
Arid4a
Rfx1
N6amt1
Pim3
Ap3m2
Pknox1
Fyco1
Xcr1
Hgsnat
Usp1
H2bc21
H2ac21
H2ac20
Zfp963
Olfr806
H4c4
H3c4
Tbccd1
Dnajb11
Mis12
Derl2
Dcaf15
H4c14
H3c13
H2bc18
Kpnb1
Phb
Gm5165
Gtf3c6
Il31ra
Shc1
Flad1
Cks1b
Lenep
Far1
Ttc39d
Srsf7
BC107364
H2bc7
H2ac7
H3c2
H2ac4
H4c2
H4c1
Unk
H3f3b
Lima1
Cnpy3
Jund
Iqcn
Dcaf11
Hmgb2
Baz2a
Atp5b
Gtf2a1
Fbxl3
Prdx1
Srbd1
Abhd6
Pgp
Mlst8
Bricd5
Klhl24
Lats2
Ppia
Kif2c
Rbm39
Tsnaxip1
Ranbp10
H3c1
H4c12
H2bc15
H2ac15
Pnrc1
Glis2
Ppp2r1a
Rps19
Tnpo1
Rnf5
Agpat1
Kpna1
Gm3636
Pitpnm1
Cdk2ap2
Pradc1
Cct7
Zfp143
Rab11b
Clk1
Rnpc3
Slc39a3
Klf7
Fus
Lsm4
Zfp868
Hnrnpa1
Cbx5
Dera
Sde2
Tle1
Gm3448
Gm3417
Tcte3
Gm3435
Marchf7
Kctd9
Cdca2
Eif1
Cnot6
Idh3b
Slc5a5
Rpl18a
Map1s
Eef1a1
H4c11
Aven
Nucks1
Hspa5
Nepro
Prxl2a
Poldip3
Zfp866
Fmnl3
Ncdn
AU040320
Top2b
Sel1l
H4bc24
H2bc23
H2ac24
H2ac23
H4c17
Ifrd1
E030030I06Rik
Srrm2
Cyth2
BC005537
Polr2e
Ywhab
Tmem94
Pabpn1
Sprr2a2
Sprr2a1
Dnajb4
Fubp1
Def8
Spg7
Sumo3
Rps3a1
Rbm25
Zfp654
Cggbp1
Arl2bp
Akap5
Arl4d
Tpt1
Srsf6
Khdrbs1
H4c18
Kbtbd2
Vta1
Snrpe
BC028528
Ciart
Zbtb4
Slc35g3
Polr2a
Efcab2
Hjurp
A730008H23Rik
Txnl1
Alyref2
B230219D22Rik
Cyld
Pik3cb
Mcf2l
Calcoco1
9430015G10Rik
Hmgn1
Gbe1
Hmgn2
Dazap2
Zfp523
Ilkap
Sdcbp
Zfp960
Trir
Tnpo2
Get3
Zranb3
R3hdm1
Slc35b2
Hsp90ab1
Zfp623
Nr1d2
Cdhr4
Inka1
Uba7
Polg2
Ddx5
Cep95
Rhob
H2az2
Hbp1
Sod1
Ift46
Arcn1
Nek9
Plekhb2
Fam168b
Per2
Rbm6
Rita1
Ddx54
H4c3
H1f6
Setd5
Ppp3cb
Tom1
Hnrnpr
Hsp90aa1
Ankrd1
Tef
Eri3
Eif2ak3
Mylk3
Map2k2
Creb3l3
Ddx39a
Rps8
Srcap
Phf7
Bap1
Lsm6
Tmem107
Utp4
Derpc
Chtf8
Rft1
Tinf2
Nedd8
Gmpr2
Vpreb1
Top3b
Igll1
Etaa1
Fdft1
Ppp1r10
Mrps18b
Atat1
Snx5
Mgme1
Sharpin
Maf1
Cyc1
Gm35339
Armc5
9130023H24Rik
Tgfb1i1
Mios
Fam76b
Cep57
Dglucy
Nsmce4a
Tti2
Zfp24
Ttf1
Cfap77
Uhmk1
Ints7
Dtl
Pcif1
S1pr4
Ncln
Rpgrip1
Hnrnpc
Rap2a
Nt5m
Cops3
Rmi1
Hnrnpk
Trdmt1
Ppp2r2a
Zfp326
Rae1
Pcgf3
Slc16a6
Arsg
Zfp422
Pole4
Ipo7
Zscan22
Vmn2r23
Tra2b
P4hb
Arhgdia
Cnbp
Nfkbil1
Ddx39b
Atp6v1g2
Kansl2
Zfp865
Zfp524
Fiz1
Rplp0
Gcn1
Tkfc
Ddb1
Cdc42
Eif4e2
Chrng
Mcu
Epha7
Itgb1
Spen
Eci1
Oard1
Nfya
Smg9
Hnrnpa2b1
Cbx3
Yeats4
Epc1
Tomm20
Cep41
Snx25
Mzt1
Bora
Anapc10
Abce1
Zdhhc17
Elmo2
Eif2ak4
Rfc1
Fbh1
Ankrd16
Smarcal1
Ythdc1
Acot9
Wdr78
Mier1
Bpnt2
Trmo
Srek1
Rnf44
Vps36
Ckap2
Cdhr2
Dedd
Drc7
Srsf5
Zfp658
Tut7
Csgalnact2
Sike1
Ubc
Pcbp1
Chmp4b
Nubp1
Ube2d3
Fam76a
Rp9
Bbs9
Taf15
Sfxn5
Traf4
Rpf1
Zfp428
Ercc6l2
Dgcr8
Dctd
Ptpn6
Grcc10
Polr2m
Elk4
Eif4b
Dscc1
Gimap6
Ermard
Puf60
Mdm4
Galnt11
Bola1
Brwd1
Zfp959
Gtf2ird2
Tm2d1
Ptbp1
Rcc1l
Secisbp2
Cks2
Kpna4
Smyd1
Krcc1
Pnpla8
Ankhd1
Trim27
Ywhae
Sertad2
Dzip3
Cip2a
Srd5a3
Gm3488
Rgs2
9030025P20Rik
Rheb
Chd2
Thbs3
Mtx1
Ssbp4
Lrrc25
Bnip2
Cd46
Tmpo
Mapk1ip1l
Get4
Snrnp70
Zfp821
Ist1
Gm29733
Kdm5a
Ccdc77
Tcf25
Ssxb8
H2bc1
H2ac1
Cspp1
Cops5
Aspscr1
Tmem123
Hmgxb4
Mapk6
Fbxl4
Gip
Ets1
Ankzf1
Srsf2
Mfsd11
Mettl23
Zc3h6
Rock2
Vamp2
Luc7l2
Med15
Per1
LOC666331
Gm11634
Med7
Zfp62
Prpsap2
Qrich1
Qars
Tsc22d1
Cirbp
Fam174c
Srsf3
Atp2a2
Arrdc3
Iws1
Luzp1
Rab2a
Cbfb
Ivd
Syde1
Zfand6
H1f1
Ppp2ca
Adrb3
Il17rd
Rdm1
4930453N24Rik
Thap11
Nutf2
Cenpt
Car5a
Banp
Eif3c
Pskh1
Nrn1l
Rab5b
Cdk2
Wwc2
Cep43
Tent4b
Pmel
Pts
Ptdss1
Mterf3
Fam185a
Ccdc146
Rps20
Gtf2a2
Tasor
Ghitm
Efnb2
Klf11
Lyrm7
Hint1
Mettl22
Slc4a7
Usp25
Rab24
Prelid1
Mxd3
Aak1
Srgap2
Fam72a
Mmadhc
Eif4e
Tmem263
Mall
Fhl4
Mcl1
Tmem50a
Syf2
Rsrp1
Hnrnpa3
Dpp8
Wdhd1
Socs4
Pcyt1a
Zfp341
Mxd1
Rnaseh2b
Pxmp4
Gmnn
Chrac1
Tle4
Tent2
Nmd3
Spag4
Nup205
Fam166a
Stpg3
Gm14595
Gm14590
Tubb4b
Slc34a3
Arf4
Fbxw11
Cep128
Cr1l
Esp38
Poln
Haus3
Taf4
Cox20
Cat
Smim19
Slc20a2
Osbp
Nfe2
Gorasp2
Aff4
Kat6a
Rab21
Znrf1
Tnrc6a
Ppp6r2
Ppp1r15a
Plekha4
Tmem242
Snapc4
Pmpca
Entr1
Zkscan3
Cfap45
Yrdc
1110065P20Rik
Pex2
Mmaa
Clptm1l
Ubr5
Ints9
Hmbox1
Sowahc
Septin10
Hpf1
Ensa
Smim10l1
Zfp655
Foxj2
Tmem183a
Snrpd1
Esco1
Cox5a
Gm6712
Fcgr3
Mtus1
Trpc1
Slc12a4
Tmem88
Naa38
Cyb5d1
Arl6ip1
Thap1
Nr2c2
Zfp871
Arhgap11a
Sqstm1
Eif5
Oga
Tlk2
Strn3
Ap4s1
Pkmyt1
Mbtps2
Raly
Med1
Cdk12
Scaf1
Rras
Zfp1
Ncor1
Pigl
Rpl17
BC031181
Rnf4
Rabep1
Shroom3
Dnajb1
Ywhaz
Snw1
Rpsa
Vdac2
Dnajc10
Myo1g
Thap3
Phf13
Zfp691
Igf2bp3
Haus4
Rsrc2
Kntc1
Gabpb2
Tgfbr3l
Zc3h11a
Zbed6
Opa3
Pdcd6ip
Snapc2
Ctxn1
Casc3
Tbl1xr1
Itga2b
Akap10
Sephs2
Ncoa4
Dcun1d4
Osbpl1a
Abca3
Abca17
Dnaja1
Nup62
Il4i1b
Atf5
Clcn4
Fam204a
Topbp1
Olfr62
Zfp605
Plcxd1
Gtpbp6
Tomm70a
Zfp628
Nat14
Gm36210
Zranb2
Mtpap
Atf7
Nyx
Smchd1
Stag2
Dusp1
Ulk2
Odc1
Psmd7
Hps5
Gtf2h1
Eif4a3
Card14
Rfesd
Cox8a
Pum1
Cfl2
Actl6a
Nip7
Cog8
Mtf2
Pdf
Sdhaf2
Cpsf7
Ubxn4
Atxn7
Prpf40b
Fam186b
Zdhhc16
Exosc1
Top2a
Ndfip2
Serinc3
Gm5741
Wdr83os
Wdr83
Dhps
Prdm10
Gm7244
Atad1
Ppm1a
Tspyl2
Trp53inp2
H6pd
Impact
Stk3
Foxk2
Ahctf1
Smarca5
Sbf2
Paip2
Oxsm
Ngly1
Wdr4
Ndufv3
Pcm1
Usp40
Qtrt2
Ccdc191
Zfp445
Pibf1
Dis3
Pfkfb3
Ddx59
Hic2
Dync1li2
Slc35a3
Kcnu1
Ash2l
Yy1
Gm33989
Mettl1
Eef1akmt3
Cyp27b1
Brox
Aida
Ddx3x
Atf1
Txnrd1
Eid3
Tcerg1
Pcnt
2610028H24Rik
Hp1bp3
Txndc5
Dync1li1
Tkt
Sf3a2
Plekhj1
Amh
Tex261
Bmpr1a
Ticrr
Cd300lb
Luc7l
Fam234a
Krr1
Bola3
Ralgds
Rnf38
Ung
Alkbh2
Sun1
Gemin4
Dbil5
Ubb
H3f3a
Med17
Hnrnpm
Ube2d2a
Sesn1
Zfp384
Rad18
Zbed3
Lyl1
Kmt5a
Msh6
Ufsp2
1700029J07Rik
Zfp882
Gm3411
Nfkbiz
Kmt2e
Zfp637
Dnajb12
Irf2bpl
Rpl13
Rnf111
Sugp1
Mau2
Brd4
Vamp3
Swsap1
Epor
Epb41
Larp4
Crk
Ddx17
Rpl36
Micos13
Gps2
Eif5a
Kpna2
Hagh
Fahd1
Rhbdd2
Atg14
Cic
Dpysl2
Tdrkh
Syce1l
Mon1b
Znfx1
Nudt13
Urgcp
Slc39a10
Trpc4ap
Gm5617
Zzz3
Eif3e
Cavin1
Hsd17b12
Usp35
Kctd21
Cisd2
Zfp433
Gm32687
Mageb3
Ctdspl2
Psmd4
Fnbp1l
Elk1
Selenof
Hs2st1
Spata17
Gpatch2
2610008E11Rik
Srpx2
Evi5l
Mat2a
Txnip
Tiparp
Hnrnpab
Psma3
Mphosph9
2810006K23Rik
Exoc5
Ap5m1
Sfr1
1810058I24Rik
Fkbp3
Fancm
Pdcd4
Pacs2
Pih1d2
Nkapd1
Exosc10
E2f8
Hnrnph1
Gsto1
Rfx3
Tmem248
Eea1
Tspo
Mcat
Mrpl55
2310033P09Rik
Rps15a
Mrps9
Gm10033
Txn1
Gmfb
Cgrrf1
Ankrd17
Csde1
Psmd12
Pitpnc1
Psmd3
Pak2
Kansl1
Sav1
Ebag9
Rbfox2
Cnih1
Rhog
Bptf
Snrnp35
Rilpl2
Stil
Chmp3
Myof
Dpagt1
Hmbs
H2ax
Mpdu1
Eif4a1
Rpl10a
Frmd6
Klf9
M6pr
Mapkapk5
Zfp809
Rps24
Polr3a
Kbtbd7
Cyrib
Fam13b
Ccdc50
Zfp553
Patz1
Ing3
Vrk2
Axl
Hyls1
Ccdc88a
Ppp2r3a