ChIP-Atlas: Target genes

Potential target genes for HDAC3

Query protein: HDAC3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10045307 | LNCAP
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
HDAC3's Target genes

◢ HDAC3: Average

◢ SRX5930120: Acute myeloid leukemia

◢ SRX5930121: Acute myeloid leukemia

◢ SRX017705: CD4+ T cells

◢ SRX5457145: K-562

◢ SRX5457146: K-562

◢ SRX8976672: KYSE-410

◢ SRX8976673: KYSE-410

◢ SRX8976674: KYSE-410

◢ SRX8976675: KYSE-410

◢ SRX8976676: KYSE-410

◢ SRX8976677: KYSE-410

◢ SRX8976678: KYSE-410

◢ SRX8976680: KYSE-410

◢ SRX10045306: LNCAP

◣ SRX10045307: LNCAP

◢ SRX3401278: MCF-7

◢ SRX3401281: MCF-7

◢ SRX2140209: MM.1S

◢ SRX5930140: RH-4

◢ SRX5930141: RH-4

◢ SRX059713: VCaP

◢ SRX059714: VCaP

◢ HDAC3: STRING

GET4
HEXA
UBE2Q1
MARCHF9
CDK4
SYNGAP1
CUTA
AP5Z1
ILF3
HPS5
GTF2H1
MTRNR2L1
UVRAG
LAMP1
KAT5
OSGEP
APEX1
RPL5
FRG2C
SPATC1L
ATP6V0D1
AGRP
WASHC2C
WASHC2A
PGK1
COMMD9
MTHFR
CLCN6
CTDP1
SPNS1
YJU2
TRMO
THRAP3
PIP4P1
KDM4C
NDUFS7
EIF2S1
ATP6V1D
WDR62
THAP8
TOR1AIP2
TOR1AIP1
UBE2B
CDKL3
RPUSD4
FAM118B
HOOK2
CHMP7
CCDC90B
CLN3
APOBR
DUX4
PHF23
DVL2
MTRNR2L8
HDAC2
MED11
PLAA
IFT74
RNASEK
C17orf49
CNN2
CSDE1
TMEM259
TPP1
ITFG2
LTA4H
HAGH
FAHD1
TPR
ODR4
C8orf37
UBAP2
FNTB
SMG7
FEM1A
FBXL19
FRG2
CACYBP
PIK3R3
ZNF672
AFF4
DUS3L
LARS1
ARF4
PPRC1
FANCF
CEP162
OXNAD1
DPH3
GBA
SLX1B
SLX1A
BOLA2B
BOLA2
GSTA4
PDXDC1
ATL1
MAP4K5
MSL2
RPS29
RAD9A
SHC1
CKS1B
VPS33A
MTF2
PRKCI
NME1-NME2
NME1
NUF2
MLH1
EPM2AIP1
MTRNR2L2
MSH3
DHFR
KLHL12
THG1L
PHLPP1
SLC35A4
APBB3
RFXANK
BORCS8
TMEM116
ERP29
CHD1
VEZT
FGD6
RNF169
ATP5MC2
GABPA
ATP5PF
CDIP1
GTPBP8
TMED4
USPL1
HMGB1
HACD2
SLC38A7
NSUN4
QTRT2
CCDC191
EFHC1
LONP1
CATSPERD
STX5
EED
CEP70
USP35
KCTD21
GOSR2
ALG14
ZSCAN22
CUL5
RPS27
RAB13
ZNF140
RPLP2
PIDD1
MMADHC
ISY1-RAB43
ISY1
SNRPE
TFPT
PRPF31
ZMPSTE24
B9D1
FRMPD1
TIMM17A
GLIPR1L2
TIMM10B
ARFIP2
SESN1
CEP57L1
RPL27
CBWD5
SLC35A5
ATG3
PRORP
PPP2R3C
EIF2AK3
BOLA2-SMG1P6
CCDC146
LAMTOR5
CDK19
AMD1
CLSTN1
PMVK
PPIP5K2
GIN1
TSACC
CCT3
LANCL2
NCBP2AS2
NCBP2
BAG6
APOM
PCYT1A
UBQLN1
SLC33A1
METTL1
EEF1AKMT3
CYP27B1
PIGO
C5orf51
CPEB4
UBAP2L
C1orf43
CYCS
CCT2
ESCO1
TIMM13
TUFT1
UBE2J2
PPP1R2
TIMM22
AATF
USE1
NUDT15
TMEM242
H4C15
H4C14
TTI2
C16orf91
NSA2
GFM2
CCNL1
SP2
TOGARAM1
KLHL28
INTS8
RFX1
TM9SF4
FUS
UFSP2
C4orf47
ATP5MF-PTCD1
ATP5MF
TASP1
TNFRSF19
HSPA5
SLC35B1
ARL14EP
PRMT2
HOXC13
SIRT4
WDR36
NCSTN
COPA
USP42
MFSD1
TTC32
THAP6
MRPL54
APBA3
ACAD9
DAD1
CCDC59
PPOX
WARS2
ATP6V1G1
PMF1-BGLAP
PMF1
BMS1
BHLHB9
IQCG
EIF3E
LMLN
DBT
PDIA5
SRPRB
BNIP3L
GBE1
FITM2
IDE
TIPARP
SCAF11
INTS7
DTL
C10orf88
SLC17A7
DUSP12
SUPV3L1
CRYAA2
CRYAA
VHL
PDCL3
PEF1
CD300LG
MTBP
MRPL13
C12orf66
RINT1
CLTC
EIF4G2
CLPB
TBRG4
PPP2R5A
SEC31A
ARIH1
RPS26
RPL21
OXSR1
OSGIN1
DCAF8
GOLGB1
SPG11
MRPL45
AP2B1
STMP1
PRCC
ORC4
MBD5
STAM
SKA3
MRPL57
SMIM4
NT5DC2
SPATA25
NEURL2
CTSA
RAB5B
CBWD3
HSPH1
H3C15
H3C14
H2AC19
H2AC18
TMX2
MED19
SDR39U1
ZCCHC7
PDE4DIP
LGALS8
SF3A3
SERF2
EIF3F
EEF1AKNMT
KLHL32
NDUFAF4
SLC35E2B
ABHD14B
ABHD14A-ACY1
ABHD14A
TESK1
RPL22L1
EXD1
CHP1
PSMC4
WDR89
FIS1
NFX1
EIF3L
ANKRD54
NDUFA6
DARS2
CENPL
PPP2R1A
SMIM13
TVP23B
INO80C
UFD1
CDC45
ATG5
MOK
C17orf97
GTF2H4
SRP9
N4BP2L2
ORC2
GTF2H2
GTF2H2C_2
ARMC5
OSCP1
ECH1
CHEK1
SRFBP1
CCDC15
TMED10
LOC101928764
EID1
FBXL18
KAT7
TTC37
ARSK
PDE12
NUP214
SSBP1
DDX18
RFC2
PPIG
LUC7L2
FMC1-LUC7L2
FMC1
RRM1
MRPS7
GGA3
SELENOH
HMGB2
SETD4
CEP350
RETSAT
ARID3B
IKZF3
MYEOV
ALDH18A1
GRB7
PDXK
HNRNPA2B1
CBX3
SLC39A10
EPC2
WDTC1
SLC45A4
DDX17
NUDT3
STRBP
SLC25A25
NAIF1
GABARAP
SEPTIN7
TMEM199
POLDIP2
TES
WASF2
ERAL1
ERCC1
POLR2J3
GPR137
BAD
SFSWAP
SERPIND1
GSK3B
NAGPA
RSF1
AAMDC
CD300LF
MSMO1
CRBN
RPGRIP1L
FTO
RGPD2
RGPD1
UBE3B
DAGLA
GRHL2
RBBP8NL
RBM48
PEX1
RALGDS
PSMD3
SUPT7L
SLC4A1AP
MDM2
TXNRD1
SKIL
SUMF1
RAE1
BCL3
EFNA3
ZBTB7B
IL1R1
ZZZ3
CLCN7
HES1
SMARCD2
USP49
TOMM22
C1orf174
DDX42
CCDC47
SRSF1
C8orf33
STARD3
TRIB1
POLR3F
DZANK1
SERPINI1
PDCD10
RBBP5
ASB2
SOCS2
ABCC10
MAN1B1
STX16
RAPGEF3
LZTR1
STAT6
TSR3
GNPTG
MACC1
THAP7
ANGPTL4
POLR2J2
VPS50
HEPACAM2
ATF3
UNC13D
CD55
GADD45A
SEPTIN9
RHOBTB2
BHLHE40
APOBEC3B
ESRP2
PTPRF
FAM72C
IRF2BP2
SRGAP2B
FAM72D
SQSTM1
MIEN1
ZNF335
PGAP3
ERBB2
RARB
TBL1X
TMC7
TRMT2A
RANBP1
PGLYRP4
MCOLN1
FANCA
PSMB7
POLR2J
CLPTM1
AURKAIP1
SUPT6H
SDF2
GSR
TET3
CARD16
IDH3B
TRA2B
PDGFB
RDH5
ITGA7
BLOC1S1
SPINK1
SMN2
SMN1
ERICH4
DMAC2
SRGAP2
FAM72A
WASHC5
NSMCE2
MOCS3
DPM1
VIRMA
GET3
ZNF408
ARHGAP1
ELFN2
SALL4
RGS3
XPO7
UPP1
KMT2E
TRAF4
MRTO4
EMC1
SRI
PDAP1
BUD31
SLC25A53
TSFM
TOP3A
SMCR8
SENP1
PFKM
TMEM205
RAB3D
CCDC159
ANXA2
YAP1
CYP2A13
CDKAL1
PRICKLE1
GLTP
SLC25A45
FRMD8
IRF2BPL
ENTPD4
MYCL
PPP6R1
ZNF165
SAP30BP
RECQL5
LAMA3
CASC3
DOK7
SLC4A2
CDK5
SLIRP
ALKBH1
PAXBP1
TRMT1
NACC1
SHLD2
GLUD1
PCIF1
RARG
TXN2
MMP13
U2SURP
ZNF383
HUS1
UBE3C
ZDHHC6
VTI1A
AMDHD2
ST7
EIF2D
CDK12
ARHGAP32
FLOT2
TAS1R1
NOL9
WWOX
CELA3B
SLC25A11
RNF167
AXL
ZSCAN25
CCDC88B
BIRC2
ATAD2
PMS1
ORMDL1
MTRNR2L9
ZBTB7C
ZBTB45
STAU2
GATB
MEF2C
GFM1
DIP2A
SPAG16
MEMO1
IER3
FLOT1
TM2D2
MRPS15
ADAM9
FAM83A
PTBP1
GTPBP6
KRR1
SUSD4
SUMO3
RTF2
MAMDC2
DDX41
DNAJC11
JMJD7-PLA2G4B
JMJD7
NUP107
ZNF668
VAC14
SEPTIN5
GP1BB
INTS10
TMEM40
KAT8
SH3GL1
CHAF1A
NDUFA2
IK
KLF10
WBP2
E2F6
ZMYND8
EPHB3
LIMA1
NDUFA4
SPRED2
PHAX
ZNF576
IRGQ
TRIP4
CCNT1
ARID2
ANKS6
LRRC47
SEMA3B
ADGRB3
MOB1B
CCDC97
THOP1
SGTA
COL23A1
MIER1
ATG9B
ABCB8
DAZAP1
CALML5
ARID5B
RAD51AP1
C12orf4
RRP15
PSME3
UBE2I
HNRNPH2
TNC
KANSL3
FER1L5
SLK
SRGAP2C
KCNMA1
FAM72B
TJP2
FGGY
FSCN1
ACVR1B
STX1A
SUMO2
NGDN
BANP
ALG6
THEMIS2
HM13
SCAMP5
BSG
PPWD1
CENPK
KDM7A
OTUD7A
TRIM16L
SSH1
VGLL4
USP30
XRCC5
ETV4
CMIP
BIRC3
ADAM23
NGB
NAPB
EPS8
C19orf33
RPTOR
STX6
TBC1D30
GPATCH3
GNS
SMARCA4
BAIAP2
RAB3IP
ATG14
LARP1
ZNF2
FLYWCH1
TSN
PSMD1
DHRS13
ADGRL1
VPS11
ITGB3BP
EFCAB7
MEOX1
CACTIN
ZNF524
RABGAP1L
IGLL5
FIZ1
ELP3
EIF5A2
ANKMY1
TMEM208
LRRC29
SLC6A9
BLOC1S4
B4GALT2
ATP6V0B
DENR
PPP5D1
CALM3
TNNC2
SNX21
ATP6V1H
PRMT3
PLD1
STMN3
RTEL1
PMEPA1
NUDCD3
DICER1
MAP3K7
MRPS11
MRPL46
NFE2
BAX
BCAS1
DUSP6
PEAK1
HMG20A
ECHDC1
ZNF497
RXRA
SBK1
FAIM
KLF9
NSD1
ZCCHC4
SPHK2
RPL18
FAM83E
PARD6B
SKIDA1
STRA6
KDM3A
QRICH1
NOXO1
GFER
TRUB2
COQ4
TCAF2
NPEPPS
RPS11
OAZ3
MRPL9
SCYL3
RMND1
ARMT1
PSMD5
TNPO3
TEX46
PLAGL1
KDM1A
AP2A2
PHF19
PRKRIP1
GPRC5A
TFDP1
DDX23
VWA7
TGIF1
RHOD
NOL8
CENPP
LPCAT3
LMAN2
GRHL1
PUS10
PEX13
NDUFAB1
TMEM18
LYPLA1
EIF1AD
BANF1
NOP16
HIGD2A
MTUS1
CORO7
DNAJC30
BUD23
DDX46
DPP3
HDAC6
CBX7
SAP30
BAHCC1
ATP6V1C1
RNPEPL1
STYXL1
PRKCA
NEXN
LSG1
UBE2E2
SFXN1
RRAGC
UPK3B
RARA
GRIN2D
FASN
MAZ
PLEC
NR5A2
NAPA
SMG8
NVL
SPTAN1
REEP4
SEC13
RNF223
PTPRR
METTL2A
DGAT2
PRAME
MRPL10
LRRC46
SH2B1
TMEM59
HSPB1
SYNCRIP
DHRS3
KRT80
LTO1
TSC1
SERP1
GFI1B
EIF2A
COX16
STON2
PDCD6IP
MKLN1
NFKBIA
BNIP1
ARID1A
TMCC3
DUSP2
MRPL1
PYCR2
TPRN
TMEM203
NDOR1
CHD7
UBE2L3
ZNF507
BRPF1
TMCC2
ATG101
PLEKHF2
MINDY2
FBXL3
DNPEP
ST6GALNAC1
PRR3
GNL1
INTS1
SART3
ISCU
ZGPAT
CAPRIN2
C17orf58
ARFRP1
AGTPBP1
PLEKHH2
MAN2A2
CHIC2
ZNF830
CCT6B
LRFN4
LFNG
CACNA2D2
NFU1
MARVELD1
MAN2C1
DRC7
USP28
SAMD10
PRPF6
PHF21A
MYL12A
ACTN4
PSMG2
CEP76
RTN4
KDSR
TACC1
NDUFB5
MRPL47
WWP1
SF3B3
COG4
SSNA1
ANAPC2
AAAS
EIF3H
WNK1
BCAR1
EPB41
PTP4A3
BACH2
FZR1
FOS
PATZ1
JMJD1C
CFAP206
RPS14
TFAP2C
IKZF2
AIFM1
KMT5B
DTNB
CENPBD1
FAM133B
SMYD1
PLA2G2A
IGF1R
DNAH5
COPS7B
PES1
CSF3R
TINAGL1
LRRC23
METTL2B
USF2
SYT7
SLC1A7