ChIP-Atlas: Target genes

Potential target genes for HDAC3

Query protein: HDAC3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX8976673 | KYSE-410
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
HDAC3's Target genes

◢ HDAC3: Average

◢ SRX5930120: Acute myeloid leukemia

◢ SRX5930121: Acute myeloid leukemia

◢ SRX017705: CD4+ T cells

◢ SRX5457145: K-562

◢ SRX5457146: K-562

◢ SRX8976672: KYSE-410

◣ SRX8976673: KYSE-410

◢ SRX8976674: KYSE-410

◢ SRX8976675: KYSE-410

◢ SRX8976676: KYSE-410

◢ SRX8976677: KYSE-410

◢ SRX8976678: KYSE-410

◢ SRX8976680: KYSE-410

◢ SRX10045306: LNCAP

◢ SRX10045307: LNCAP

◢ SRX3401278: MCF-7

◢ SRX3401281: MCF-7

◢ SRX2140209: MM.1S

◢ SRX5930140: RH-4

◢ SRX5930141: RH-4

◢ SRX059713: VCaP

◢ SRX059714: VCaP

◢ HDAC3: STRING

MTRNR2L8
IKZF3
MTRNR2L2
MSH3
DHFR
MYEOV
TMEM199
POLDIP2
GRB7
ARID3B
TES
MTRNR2L1
ERAL1
SLC45A4
MRPL45
RARB
C8orf33
SFSWAP
CD300LF
UBE3B
RGPD2
RGPD1
RBBP8NL
POLR2J3
CRBN
POLR3F
DZANK1
CLPTM1
C1orf174
PSMD3
BHLHE40
VIRMA
MIEN1
GRHL2
ESRP2
TSR3
GNPTG
PSMB7
ASB2
SLC35B1
LAMP1
PGAP3
ERBB2
SERPIND1
RBM48
PEX1
TXNRD1
ZNF383
ATF3
UNC13D
STARD3
APOBEC3B
MMP13
TRA2B
LZTR1
POLR2J
CD55
TJP2
TFPT
PRPF31
HES1
MTRNR2L9
MTBP
MRPL13
C16orf91
ISY1-RAB43
ISY1
PLEKHH2
CYP2A13
UBQLN1
ERICH4
DMAC2
POLR2J2
SLIRP
ALKBH1
RRP15
HAGH
FAHD1
RAB3IP
MRPS11
MRPL46
RBBP5
VAC14
RAD51AP1
C12orf4
SKIL
STAT6
IDH3B
SMN2
SMN1
THAP7
NDUFA2
IK
NDUFB3
FAM126B
ERCC1
JMJD7-PLA2G4B
JMJD7
TET3
SOCS2
ITFG2
SPINK1
SQSTM1
PHAX
GATB
HEXA
FLOT2
TMC7
TOMM22
TRMT1
NACC1
UBE2I
MRTO4
EMC1
CLDN9
RAPGEF3
YAP1
LPCAT3
STX16
TSFM
IRF2BPL
U2SURP
SALL4
SAP30BP
RECQL5
ABCC10
SUPT6H
SDF2
CARD16
MOCS3
DPM1
RPS26
VPS50
HEPACAM2
SLC25A53
ZNF576
IRGQ
ELP3
SMG7
MAMDC2
NAGPA
TBRG4
PCNP
KRT80
NDUFAB1
TRMO
SUPT7L
SLC4A1AP
TRIB1
PUM2
ZSCAN25
ZMYND8
METTL2A
SUMF1
MFSD3
GPT
SPATA25
NEURL2
CTSA
LMAN2
DDX46
RALGDS
ZBTB45
DNAJC11
KAT5
SNRPE
RGS3
CDKAL1
FAIM
BCL3
SENP1
PFKM
C19orf48
ATP5MF-PTCD1
ATP5MF
EPHB3
ELFN2
STYXL1
EIF3H
SLC25A45
FRMD8
TTI1
RPRD1B
CCDC59
TAS1R1
NOL9
STON2
TRAF4
CCDC88B
MTUS1
TBL1X
NAPB
ATG14
REEP4
MTO1
ZNF17
ASB6
AGTPBP1
COLEC11
BRF2
GET3
LGALS8
SERP1
EIF2A
TTC31
CCDC142
BRIX1
ZSCAN22
RARG
SPAG16
HS3ST6
PRKRIP1
PPWD1
CENPK
DDX23
DIABLO
HEMK1
C3orf18
METTL2B
SUPV3L1
CCDC97
ATG101
RAE1
IL1R1
UPK3BL1
BNIP1
CHMP7
BCAS1
TFAP2C
POLR1H
ATAD2
ZNF3
LSG1
VPS33A
SRI
KLF10
RTF2
TRIP4
PSME3
ECHDC1
ZGPAT
ARFRP1
SYT12
TOP3A
SMCR8
CASC3
NME1-NME2
NME1
PLA2G2E
ZNF165
HUS1
DDX41
EIF3F
PTPRR
MAPKAPK5
GADD45A
SH2B1
TIMM22
MFSD10
TUFM
ZNF524
FIZ1
RCE1
ZZZ3
BAIAP2
BMS1
MED20
BYSL
DLC1
RBPMS
DOK7
FAM133B
GRK7
TXN2
BIRC3
LARP1
EIF5A2
PHF3
S100A2
PSMD1
DPP3
GTPBP4
OR2W3
IRF2BP2
AXL
GTF3C5
TIMM50
RBM42
ATG9B
ABCB8
UPK3BL2
GTSF1L
ECH1
STMN3
RTEL1
GCN1
FIS1
TRIM16L
STX6
TBL3
RNF151
MED6
TBL1XR1
ZNF830
CCT6B
PTPRU
ATP6V0D1
AGRP
GLTP
ZC3HC1
ZRANB2
VPS37A
CNOT7
MIEF1
KRR1
MRPL1
HOXA3
TMEM95
KCTD11
PSG7
WASHC5
NSMCE2
EIF1AD
BANF1
MARVELD1
POMZP3
CDK5RAP2
AQP5
YJU2
ZNF408
ARHGAP1
STX1A
ZNF2
TIPARP
TBC1D17
AKT1S1
FRMD7
SPHK2
RPL18
FAM83E
COX16
PLA2G2A
ZCWPW1
MEPCE
TRMT2A
RANBP1
TTC32
SSNA1
ANAPC2
SEPTIN9
USP30
C19orf33
VPS11
NFKBIA
THBS3
MTX1
PRR3
GNL1
PSMG2
CEP76
ZFHX3
RAB40C
LYPLA1
PDCD6IP
LRRC23
CHRM3
ANXA2
GFM1
LANCL2
GPATCH3
RXRA
ATP6V1C1
COPS7B
TJAP1
UTP20
GPSM3
PBX2
DDX11
BIRC2
PDAP1
BUD31
ZDHHC6
VTI1A
SLX4IP
MKKS
PPP1R37
GLCCI1
MLX
COASY
MMP10
FCF1
AREL1
ZFP64
TMEM205
RAB3D
CCDC159
CDK12
SLC2A4RG
LIME1
EVPLL
RPL26L1
NUS1
BTNL8
CDC6
KLF9
PHLDB2
EIF3E
UQCRQ
GDF9
ZBTB7B
KAT8
RPS12
ZNF579
NGDN
CDK11A
TSR1
SGSM2
NUP214
TSN
MEAK7
FSCN1
MRPS7
GGA3
FAM184A
MED4
ASH2L
ABCC3
PNO1
EXOC5
AP5M1
ZNF335
PUS10
PEX13
SART3
ISCU
MED23
PTAFR
AURKAIP1
CCNT1
RPS14
RPL23A
RAB34
C7orf65
COG2
PMPCA
ENTR1
MTHFR
CLCN6
PLEC
DGAT2
SF3B3
COG4
PGGT1B
MTA2
SEC13
DNAH5
SCARB1
LSM5
ERLIN2
OR2T1
FRG2
RASEF
PHF5A
ACO2
TMEM101
TMEM208
LRRC29
PIM1
YIPF3
POLR1C
PSG1
GRWD1
PTPN2
PLAGL1
KMT5C
URM1
ELF3
GTF2H3
EIF2B1
ERGIC2
DNTTIP2
GJB7
NVL
HSPBP1
BRSK1
NOTCH3
RRNAD1
ISG20L2
RBP2
TGFBI
SPNS1
OAZ3
MRPL9
DNAJC30
BUD23
ANXA3
KRT17
MUL1
RCC2
GSR
ZBTB7C
ARID2
NUDCD3
MAP3K7
SF3A3
LRFN4
NDUFB5
MRPL47
GPC1
RWDD1
HR
ALKBH3
MRPL48
KPTN
NOC2L
KLHL17
ZFPL1
CDCA5
DUX4
PRSS22
RBM19
OPA1
TCAP
PNMT
MACROD1
RDH5
ITGA7
BLOC1S1
SKIDA1
HSPB1
FOS
WDR53
FBXO45
FAM162A
CCDC58
ACP3
PRKG2
PARL
C5orf51
DHRS3
ANKK1
PHB2
LY6D
NDRG1
SEMA3B
MRPL10
LRRC46
NDUFA9
AKAP3
MED1
IPO11
TNFRSF12A
THOC6
HCFC1R1
CLDN6
SEMA4B
WASHC1
SNRPB2
E2F8
HCAR2
CERK
INTS1
UPP1
PLD1
FOXA2
MRPS15
FAM83A
PFDN1
TRIM29
ZNF16
ARHGAP30
LIMA1
TCERG1
SETD3
CCNK
UBXN1
MICAL2
ZCCHC4
MB
GSN
TEKT2
ADPRS
FAM240C
POM121L12
PPFIBP2
PCID2
CUL4A
HMOX1
OR6B2
NDUFA10
MRPL55
VWA7
SLC26A8
MAPK14
SETD1A
DRG2
NME3
MRPS34
EME2
MYL12B
ZMAT2
RARA
CORO1C
LY6E
PMEPA1
UTP3
KMT2D
PIK3C2B
RINT1
SNRPB
ZNF341
MAGEF1
QRICH1
TSC1
GFI1B
MRPL40
HIRA
LMNA
PRKAR2B
CDC5L
CTTN
MRPS26
GNRH2
CATSPER2
CEBPB
TAGLN2
CAPN14
CDC23
TTC6
FOXA1
VASP
IER3
FLOT1
EPS8
MTIF2
PSMC3
MRPS22
SEMA6A
TCF7
CSTF1
AURKA
GTF3C3
AP5Z1
PAXBP1
BCAR1
PTP4A1
CLPB
TMPRSS4
NUP107
TPST2
TAF6
CNPY4
C8orf74
NUP85
ING5
MBD6
DDIT3
SREK1IP1
CWC27
SEC61B
ALG2
RP1L1
FADD
TMEM41A
CNPY2
LGALS7B
DDX49
COPE
SRP68
GALR2
FOXN4
TIMM9
KIAA0586
MORF4L1
UVRAG
TXNL4B
DHX38
PDE12
CDK5RAP1
ADAR
LIF
XPO4
DENR
MAN2C1
GUCA2A
PTPN12
DUS2
DDX28
SLC25A51
ADAMTS16
BANP
ANAPC5
PPP5C
DHRS13
KYNU
SYT1
TRIM4
KCNJ15
ATP6V1H
ELAPOR2
TIPIN
SEMA3F
SPINT3
ANKMY1
RNPEPL1
NR1H2
NUDT5
CDC123
TOMM6
PIGO
STK36
RNF25
KCNK15
CCDC43
LONRF3
WDR97
MAF1
CD36
PARP4
UPK3B
CLDN4
CWC25
FASTKD2
OGG1
SLC25A11
RNF167
METTL1
EEF1AKMT3
CYP27B1
SMG8
MCM7
AP4M1
MIDN
CCZ1B
JADE2
COLCA2
LRMDA
MRPL58
SRD5A1
TGIF1
TPRN
TMEM203
NDOR1
EXOSC5
BCKDHA
PEPD
PNKD
C15orf62
KMT2E
SPRED2
CDKN1A
C6orf226
HSPB7
CAPN1
NDUFA4
IQUB
NFX1
SKIV2L
NELFE
GPRC5A
TPD52L2
ABHD16B
LZTS2
PSG8
TGOLN2
RHOD
PKP2
ITGB1BP1
CPSF3
ZNF398
COPS8
LTO1
UBE2L3
PPIL3
NIF3L1
SHC1
CKS1B
SNRPD2
QPCTL
S100A6
ME1
DROSHA
C5orf22
EPYC
SNRPC
ERCC5
SURF6
CWF19L1
GABRR1
ISG20
RPS21
FTH1
PES1
TMBIM1
NAPRT
MROH6
PRR19
PAFAH1B3
ZNF384
TRMT112
PRDX5
COMMD5
RAB5IF
PERM1
ZNF561
CD63
ITPKC
COQ8B
ADPGK
MTMR14
MRPL12
TINAGL1
XAB2
PCP2
SLC24A1
INTS14
SPRYD4
ZNF750
SSBP1
NFE2
CBLC
RNF19A
NPAS1
UBE2M
CHMP2A
ZCRB1
PPHLN1
SLC12A4
WDR46
PFDN6
ANKRD22
RUSF1
PABPC4L
LRCH4
FBXO24
MEGF8
MBNL2
SKA3
MRPL57
PHF23
ALDH18A1
PDXK
HNRNPA2B1
CBX3
GET4
SLC39A10
EPC2
WDTC1
DDX17
EIF4G2
NUDT3
STRBP
SLC25A25
NAIF1
GABARAP
SEPTIN7
WASHC2A
WASF2
WASHC2C
UBE2Q1
GPR137
BAD
MARCHF9
CDK4
GSK3B
RSF1
AAMDC
MSMO1
RPGRIP1L
FTO
DAGLA
FRG2C
MDM2
EFNA3
SYNGAP1
CUTA
CLCN7
SMARCD2
USP49
DDX42
CCDC47
SRSF1
RPUSD4
FAM118B
GBA
ILF3
SERPINI1
PDCD10
COMMD9
MAN1B1
ATP6V1G1
MACC1
ANGPTL4
RHOBTB2
PTPRF
FAM72C
SRGAP2B
FAM72D
OSGEP
APEX1
SLC35A5
ATG3
PGLYRP4
MCOLN1
FANCA
RAD9A
PDGFB
SRGAP2
FAM72A
XPO7
CLN3
APOBR
HPS5
GTF2H1
INO80C
PRICKLE1
ENTPD4
MYCL
MFSD1
PPP6R1
LAMA3
SLC4A2
CDK5
DVL2
SHLD2
GLUD1
PCIF1
CEP162
UBE3C
AMDHD2
ST7
EIF2D
ARHGAP32
WWOX
CELA3B
PMS1
ORMDL1
STAU2
MEF2C
DIP2A
MEMO1
TM2D2
ADAM9
PTBP1
GTPBP6
PMF1-BGLAP
PMF1
SUSD4
SUMO3
UBE2B
CDKL3
PIP4P1
CLSTN1
ZNF668
SEPTIN5
GP1BB
INTS10
TMEM40
SH3GL1
CHAF1A
WBP2
E2F6
ANKS6
LRRC47
UBAP2L
C1orf43
ADGRB3
MOB1B
THOP1
SGTA
COL23A1
MIER1
DAZAP1
CALML5
ARID5B
HNRNPH2
TNC
KANSL3
FER1L5
SLK
SRGAP2C
KCNMA1
FAM72B
FGGY
ACVR1B
SUMO2
TPP1
ALG6
THEMIS2
HM13
SCAMP5
BSG
KDM7A
WDR62
THAP8
OTUD7A
SSH1
THRAP3
VGLL4
XRCC5