ChIP-Atlas: Target genes

Potential target genes for HDAC3

Query protein: HDAC3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5930140 | RH-4
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
HDAC3's Target genes

◢ HDAC3: Average

◢ SRX5930120: Acute myeloid leukemia

◢ SRX5930121: Acute myeloid leukemia

◢ SRX017705: CD4+ T cells

◢ SRX5457145: K-562

◢ SRX5457146: K-562

◢ SRX8976672: KYSE-410

◢ SRX8976673: KYSE-410

◢ SRX8976674: KYSE-410

◢ SRX8976675: KYSE-410

◢ SRX8976676: KYSE-410

◢ SRX8976677: KYSE-410

◢ SRX8976678: KYSE-410

◢ SRX8976680: KYSE-410

◢ SRX10045306: LNCAP

◢ SRX10045307: LNCAP

◢ SRX3401278: MCF-7

◢ SRX3401281: MCF-7

◢ SRX2140209: MM.1S

◣ SRX5930140: RH-4

◢ SRX5930141: RH-4

◢ SRX059713: VCaP

◢ SRX059714: VCaP

◢ HDAC3: STRING

MTRNR2L2
MSH3
DHFR
ARID3B
HEXA
FRG2C
MTRNR2L8
LAMP1
ENTPD4
WASHC2A
WASHC2C
FRG2
PDGFB
MTRNR2L1
AP5Z1
TMCC3
MEOX1
ERCC1
TRIL
SPATA25
NEURL2
CTSA
TNC
CORO7
TNNC2
SNX21
DUX4
MSS51
ZNF668
CLCN7
ANGPTL4
WBP1L
CELA3B
MACC1
ARID5B
RGMB
C1QTNF1
COL23A1
AFAP1
CSNK2A3
KCNMA1
KLHL41
SUMF1
TMEM91
ZAR1L
BRCA2
THEMIS2
GPSM1
KAT5
STRA6
TMEM239
C20orf141
ARHGAP25
SYNPO
TRMO
STBD1
SLC1A7
IGLL5
PVALEF
AATK
GADD45A
OR51T1
GFRA1
ATP6V0D1
AGRP
COMMD9
SLC35A5
ATG3
CLN3
APOBR
ABCC10
IFNLR1
TGIF1
CLDN5
PYCR1
LTBP1
SULF1
FCRLA
BCAT1
NFIB
BCHE
GBA
SLC8A3
CD82
TNNT1
PRL
FREM1
FOXB2
MYPN
GET4
MYEOV
EPHA2
SPG21
SMYD1
IQSEC1
CLIP1
CYB5R1
UXS1
FHL2
SLC19A3
MYOG
TMEM120B
DOK7
BLCAP
NNAT
TNNI1
MUSTN1
ITIH4
PCBP4
FLCN
EXOC7
CMTM2
HDAC9
TBL1X
HAGH
FAHD1
B3GALT5
UPP1
PALLD
ARL14EP
ZNF92
TMCC2
MYBPC2
VGLL4
ZNF507
TCAF2
ITSN2
AMDHD2
SPAAR
HRCT1
PTPRD
TES
SLC12A3
HERPUD2
TCF4
MFSD1
PAFAH2
TMEM205
RAB3D
CCDC159
DTNA
HPCAL1
SH2D7
PDZRN3
UNKL
ASF1B
NAGPA
RDH5
ITGA7
BLOC1S1
RFTN1
LIMK1
C20orf204
DPYD
CDH7
SLN
RRAGC
SBK2
BCL3
MAP3K7CL
SPNS1
SMARCD2
HHIPL2
VPS33A
MYOD1
HNRNPLL
NDUFA4
HNRNPH2
KDSR
TBC1D9
PTGIS
MYLK4
BAX
LRRC47
RPS7
NUTM2F
CREB5
IL32
EN2
TCF7L2
PRUNE2
ITGB3BP
EFCAB7
LURAP1L
MYCN
RASGRP3
CNN2
TNRC6B
RINL
NES
RYR1
GIT2
ANKRD13A
SEC22B
TNFSF15
TBC1D5
ACTC1
ID3
AGTR2
UBE2Q1
PROM1
TMEM40
SKP2
LMBRD2
SYNPO2L
FLRT3
CELA3A
CYP27C1
KLF3
SOBP
ANKRD1
RMND1
ARMT1
TRIM16L
APOC1
FAM200B
TMEM167B
CCN2
SLC44A1
ALK
HES1
USP2
SVIL
UCHL5
RO60
KANSL3
FER1L5
EZR
AMPD3
NUP50
INTS10
OPRD1
NAV2
ATF3
SSBP1
KDM3A
S100A2
NUDT4B
SLC38A8
FGF6
LBH
OR14A2
BAIAP2
HRH1
PPP6R1
BAHCC1
DAPK1
NUTM2G
MARCHF9
CDK4
MYL5
ATP5ME
ACOT9
MYH7
NNMT
CDRT4
EYA1
MYL12A
SLC25A34
NPEPL1
ANKK1
CRACR2A
MYCL
SPATC1L
SH3PXD2A
SRP68
PTK6
MXRA7
CNN3
ARMCX5-GPRASP2
ARMCX5
NAPA
CRYGN
TNNT2
VSTM2L
CHD3
G2E3
ZBTB18
FGF16
ACVR1
SREBF1
VTA1
NMBR
SYNJ2
RBPJ
MCU
MAST4
ARHGEF2
CNBD2
PHC2
SPATS2L
TP53AIP1
OCLN
MINDY2
NTSR1
WNT1
MSGN1
PLXNB2
SEMA3D
MAPK10
CHST12
INTS12
GSTCD
YARS1
S100PBP
MCOLN1
SSTR5
PRKAG3
TP53BP1
RGS12
RALGDS
TP53I3
SF3B6
FAM228B
CGGBP1
C3orf38
HS1BP3
LRRC17
SYTL2
SERINC2
TLN2
CASP3
USPL1
HMGB1
NPAS4
KANSL1
ZCCHC24
SYNE3
TBX2
MYO18A
SNRPB2
ATP6V1C1
STYXL2
GPA33
ZNF335
PLAU
LSM12
G6PC3
ABLIM1
ERI1
RPA3
SUPT7L
SLC4A1AP
TEX46
KDM1A
INKA2
ARID5A
IZUMO2
NUDCD3
CCNG2
COL16A1
CHD2
SPRED2
BTG2
SLC1A5
ENTPD2
LMF1
CARD16
PPIP5K2
GIN1
SYTL3
CCNO
MTBP
MRPL13
ABHD2
ZBTB21
STK24
MGP
KLHL12
TBC1D19
WSCD1
FSCN1
SERP1
EIF2A
PCLAF
MED18
IFNAR2
PPP1R3D
FAM217B
C1QTNF7
PBK
ARL6IP1
AMZ1
ANXA6
UTP3
COMMD4
BMF
GXYLT2
MAMSTR
SEM1
DZIP3
CIP2A
TMEM131
SOAT2
IGFBP6
ODF2L
RBM43
HOXC13
SSBP2
TACR3
TDRP
TNPO3
GCK
GNA12
C10orf67
LPCAT1
CASD1
EFNA5
RAD9A
ST7
WRN
PURG
TANK
MTHFD2L
CEP162
VPS11
OPRL1
LKAAEAR1
TMBIM4
TM4SF4
SLF2
MDM2
SPRY4
VAMP5
SIX1
NCAM1
HAAO
CLMN
MAB21L3
CCNI
TRIM62
ST3GAL5
ASB18
FIP1L1
PROSER1
NHLRC3
ZNF622
ATP6V1H
RARA
CCDC174
COX7A2
BGN
PCBP2
NBL1
RAP1B
JDP2
C2orf16
ARID2
MAP3K7
NOXO1
GFER
ANKRD12
NUP42
SCAF1
RRAS
PSMA5
RPUSD4
FAM118B
PIP4P1
THAP1
MTF2
IGSF10
AZIN1
PSEN2
CDC42EP3
TBC1D13
SLC4A2
CDK5
RRP15
MARCHF8
IFFO1
PHF23
RBM48
PEX1
DVL2
TPP1
CDH11
ZNF32
CHMP2B
AFF1
BIN1
PCNX1
CCDC9B
ARID1A
ABCC3
KLHL30
WDR11
WNT10A
HSPB2
CRYAB
C11orf52
E2F6
CACYBP
GTF2B
GPX4
GPR146
CAND1
TEX36
PSME1
FITM1
ZADH2
UVRAG
MNAT1
ITPK1
RRN3
SH3BP4
PPP4R3B
SMAD3
SPATA9
RHOBTB3
RRAD
LRRC58
PER1
MUSK
DARS1
AGAP2
TSPAN31
PLEKHS1
CDK5RAP2
GRN
DNTTIP2
NR2E3
DBF4B
SH2B1
MSL2
UBB
RXRG
STAT1
RBMS3
SF3A3
PIH1D2
NKAPD1
ARHGAP28
CHRNG
SEPTIN9
ARMC8
LOC389831
SLC2A10
THAP10
LRRC49
RIMS4
CASQ2
WBP11
C12orf60
MRAP
AP3S2
RPL22L1
FANCC
VGLL3
NFIA
RAPGEF4
KCTD9
CDCA2
ZNF593
C1orf232
PEX3
ADAT2
PPM1D
SH2D3C
THUMPD3
NAGLU
RGS3
LFNG
POLR2M
PPCDC
PALD1
FAM120B
DLL1
DENND2A
RTKN
TTC30A
LOXL1
TUBA1B
ATP6V1G1
CCDC146
N4BP2L2
CCDC200
PFDN4
MYL12B
MTMR9
KCNF1
KRTAP5-3
PLAAT5
MBNL2
DAPK3
EXOSC8
ALG5
OSGEP
APEX1
WASHC5
NSMCE2
INMT
WDR5
PNPT1
TPM2
LOC100421372
HSPA14
ERBB4
CDNF
ALDOA
ERCC6L2
POMZP3
MEF2D
EVPL
ZNF212
CCDC15
CDC7
KYAT1
IL26
EFHC1
SLC13A3
TP53RK
MPRIP
HNRNPD
MATR3
MRPL44
PLEKHD1
RBBP5
TSR3
GNPTG
EPS8
TBC1D30
GNS
JMJD1C
ATP6V1E1
SELENOT
THADA
FREM2
ZNF143
ICA1L
VPS50
HEPACAM2
COX16
SLC35E2A
NUP205
ANKRD40
NKAP
SLC22A8
METTL15
KIF18A
GBX2
SGIP1
HOXA3
STK36
RNF25
LSMEM1
SLC25A26
STXBP5
ZNF644
SLAMF1
MTMR14
ABAT
MOB4
POLR3F
DZANK1
NUP107
C2orf49
TAMM41
OTUD7B
TMEM230
NCKAP5L
SCAF11
DAB2
MYBPH
ARHGAP24
HSD17B11
FMO1
WASL
COA7
XRN1
ARRB1
COMMD2
SGO1
SETD5
ZNF775
MC2R
TRPM4
HRC
KLHL7
INO80C
DCAF10
COMMD1
PIPOX
HSPG2
HSPB1
KRT80
FANCD2
TRIM55
BEST3
CITED2
TMF1
ZNF397
SMARCE1
ATP5F1E
USP46
TRAF4
MEF2C
NUF2
SETDB1
MTERF1
MMADHC
PUM3
KAT6A
LMNA
SLC38A7
RHOJ
ZSCAN30
NKIRAS1
UBE2H
WDPCP
ARNT
SHPRH
MDH1
RPL15
TNFRSF19
ZNF684
PNRC2
NEXN
ELAPOR2
WARS2
FAM240C
TCTE3
ERMARD
CHMP1B
EPM2A
PLCD4
FLT1
HPS5
GTF2H1
RTN4
RPL27
GPN1
CCDC121
TMEM238
FAF1
SATB1
TMEM190
KANSL1L
CRBN
ZNF830
CCT6B
TTC26
RAB5B
CFAP69
SLC29A2
NAV1
STON1-GTF2A1L
PCOTH
MIPEP
ZNF343
NBEA
RESF1
MTFR2
ADNP
ATP5MC1
CEP120
ALPL
ZMPSTE24
C8orf58
CCAR2
ATR
TBPL1
ICE2
ZBTB6
SLC38A2
NOTCH2
TRIM47
DDX5
CHMP7
ZNF292
LTBP4
CYCS
C3orf14
UBXN2B
RAB11B
EPHA3
TRMT5
SLC38A6
DMPK
MFN1
STX16
ERICH4
DMAC2
THAP6
EIF4A2
THOC1
LOC114841035
FKBP2
CXXC5
NDE1
MARF1
PPP1R14B
FDFT1
CCDC59
C5orf51
KRR1
PUS10
PEX13
PSIP1
ANKRD29
TMCO1
CCNC
ALOX5AP
CPED1
PEX2
OGFRL1
NXT1
SUGT1
SEMA3A
DDX20
LIMCH1
ELOVL6
TOMM5
IPP
SRPX2
HFM1
CDC37L1
MEF2A
KMT5C
TM9SF4
CALM2
HSPB7
HBS1L
LEMD3
KRIT1
ANKIB1
VAMP4
CLCNKA
OPA1
UCKL1
RUNX1
ERLIN2
DMTF1
ZCWPW2
AZI2
PREPL
CAMKMT
ANKRD50
RFX3
ALG9
NBPF1
ZCCHC3
CELF2
HMCN2
TRMT6
MCM8
MICAL3
LRRC74A
SPAG8
HINT2
OXNAD1
DPH3
RPS12
SHOC2
BBIP1
ZFAND5
HSPE1-MOB4
HSPE1
HSPD1
GNG11
GCLM
TNFRSF10D
NUP54
CNOT2
KIAA0754
TESPA1
COL20A1
PPFIBP1
HOMEZ
BECN1
AP1AR
SERPINI1
PDCD10
RARB
MST1
RAB11A
ATG4C
TMBIM6
TMIGD3
ADORA3
ZER1
ANKRD18B
MIDEAS
MRPS23
HBP1
CFLAR
SLC35A1
ZNF780A
SERBP1
NME1-NME2
NME1
SLC33A1
MYL6
TYW3
CRYZ
DDAH1
LRP5L
GMNN
MYL6B
CCN1
PDAP1
BUD31
TINAGL1
FAM98B
PHF5A
ACO2
BMI1
COMMD3-BMI1
COMMD3
DHX8
STARD4
LARS2
SCN3B
FRA10AC1
HIPK1
PUSL1
ACAP3
ACHE
PACRGL
RBMS1
UFM1
ADGRL2
MAP3K13
IRF2BPL
SLC24A1
INTS14
COPS4
FZD1
RPL21
IGF2BP3
MTRF1L
ZCRB1
PPHLN1
MYCBP2
SULF2
PTPN1
CDH15
RPL5
APBB2
CBWD5
CLDN12
PVALB
HNRNPDL
GRB10
ENOPH1
CTNNAL1
ETV4
NRAS
PRELID3A
TAF13
SEC14L1
ALLC
ING3
COX10
MAGI3
DUSP6
AIFM1
ZRANB2
NDUFV2
PPIG
PLEKHM3
SECTM1
PARP2
NDUFAF5
ESF1
GLRX
DGLUCY
NEMF
GPATCH8
RPS6KA5
THAP5
DNAJB9
STARD3NL
SMG8
BCAR1
CSDE1
DLAT
ANO6
EMSY
HMGA2
WDR81
TRIM45
LDHB
PSMC2
DNAJC2
MTHFR
CLCN6
YTHDF2
RIN2
STAG1
SCNM1
LYSMD1
ATP2A3
SLC35D1
NUDCD1
SLC9B2
TFPT
PRPF31
TOP3A
SMCR8