ChIP-Atlas: Target genes

Potential target genes for HDAC3

Query protein: HDAC3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX017705 | CD4+ T cells
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
HDAC3's Target genes

◢ HDAC3: Average

◢ SRX5930120: Acute myeloid leukemia

◢ SRX5930121: Acute myeloid leukemia

◣ SRX017705: CD4+ T cells

◢ SRX5457145: K-562

◢ SRX5457146: K-562

◢ SRX8976672: KYSE-410

◢ SRX8976673: KYSE-410

◢ SRX8976674: KYSE-410

◢ SRX8976675: KYSE-410

◢ SRX8976676: KYSE-410

◢ SRX8976677: KYSE-410

◢ SRX8976678: KYSE-410

◢ SRX8976680: KYSE-410

◢ SRX10045306: LNCAP

◢ SRX10045307: LNCAP

◢ SRX3401278: MCF-7

◢ SRX3401281: MCF-7

◢ SRX2140209: MM.1S

◢ SRX5930140: RH-4

◢ SRX5930141: RH-4

◢ SRX059713: VCaP

◢ SRX059714: VCaP

◢ HDAC3: STRING

SOX2
RAB5C
VWA1
ATAD3C
SCGN
PROK1
MBNL3
OTX1
C16orf46
TMSB4Y
PRRG3
ARHGAP6
GDF5
CORO2B
WWTR1
MTRNR2L1
MCC
BTBD1
TRIM16L
FOXO3B
TPM3
SH3KBP1
CNOT6
PRPF4
CDC26
CCNL1
PLA2G4A
TMEM216
CRYZL2P-SEC16B
SLC25A23
CRB3
ZNF692
RAPGEF4
TAX1BP1
SPATA3
NPAS1
ABRAXAS1
R3HDM4
KISS1R
RBM38
ATG5
CLDN3
ROBO2
HEXB
FAM178B
CELA2A
HIPK3
SLBP
CDC42
PSMB2
SLC22A16
NAB1
MEIS2
MIB1
C1orf127
PPFIBP2
ZNF302
KLF2
C1orf198
GPD1L
PIK3R4
MED13L
PPP1R2B
ERCC6L
CYP27A1
AMBRA1
KYNU
FAM189A1
LDB1
RALA
BMPR1B
IFNA1
DLX4
CYP27C1
SMTNL2
PPM1A
LOC102724770
DGCR6
SEC24B
REG3A
NLRP2B
LRRC7
NSFL1C
CDC42EP1
KRTAP29-1
KRTAP16-1
KRTAP17-1
MYO9B
HAUS8
DIAPH1
NAAA
KLK5
PHF20
EIF3D
NPIPB5
NPIPB4
NPIPB3
LIPN
SKIDA1
MRPS23
VGLL3
GGA1
DHX8
SLC6A16
LRRIQ4
COL26A1
TBL1X
EMP3
CCDC114
NGF
CALM1
BCL3
ARHGAP39
GMFB
HMGCS2
NLRP2
SPATA31D3
TECR
DNAJB1
SYTL2
DNAJC22
C1QL4
ARID1A
PRRT2
MAZ
USPL1
HMGB1
KMT2E
AFAP1
SYTL3
DYNLT1
DUX4
POR
SLC6A11
GBA
SSNA1
ANAPC2
SDCCAG8
CEP170
TCTE3
ERMARD
SEPTIN9
CD69
GET4
TRIP4
PCLAF
SCML1
MORC3
LY9
GET3
CCAR2
C8orf58
SRRM1
RIC8A
BET1L
BNIP1
VTA1
NMBR
MAD1L1
MTRNR2L8
BAZ2A
EMC8
COX4I1
RPS11
CHIC2
ARL4A
PTDSS2
ANO9
PMF1-BGLAP
PMF1
UNC45B
NLE1
PHF2
ATP6V0D1
AGRP
TPK1
C16orf54
CCNT1
POLRMT
FGF22
STAT3
SURF6
DPP9
SNUPN
PA2G4
SPHK2
RPL18
FAM83E
NUF2
TMEM238
TMEM190
RPL28
ARF4
SIGIRR
USP36
COPS4
TMEM250
ANGEL1
GOLGA7
ADCK5
GTF2B
SARAF
CAB39
RPL10A
HOOK2
JUNB
GABPA
ATP5PF
SLC35E1
KIFC1
TSN
CLN5
ATXN1L
SNAP29
PI4KA
YPEL5
SCAF11
TMEM262
IKZF3
ARID3B
MYEOV
MTRNR2L2
MSH3
DHFR
HEXA
GABARAP
ERBB2
PDXK
PNMT
PHF23
DVL2
MIEN1
ALDH18A1
GRB7
LAMP1
HNRNPA2B1
CBX3
SLC39A10
ELP5
CTDNEP1
EPC2
WDTC1
AP5Z1
SLC45A4
DDX17
EIF4G2
NUDT3
STRBP
BHLHE40
SLC25A25
NAIF1
TES
SEPTIN7
TMEM199
SEBOX
POLDIP2
WASHC2A
RNASEH2C
KAT5
KIF5C
WASF2
TCAP
ART1
MRPL45
WASHC2C
HAGH
FAHD1
ERAL1
UBE2Q1
CHRNB2
SPATA25
NEURL2
CTSA
ERCC1
SSH3
POLR2J3
IRS2
KCNK4
GPR137
BAD
TSPAN31
MARCHF9
CDK4
ID1
SFSWAP
SERPIND1
GSK3B
ZSWIM1
PGAP3
UVRAG
DHRS3
NAGPA
TET3
RSF1
AAMDC
CD300LF
SPNS1
LAT
MSMO1
FRG2C
CRBN
RPGRIP1L
FTO
RGPD2
RGPD1
UBE3B
DAGLA
TRMO
RALGDS
GRHL2
RBBP8NL
RBM48
PEX1
MTBP
MRPL13
ASB2
PSMD3
SUPT7L
SLC4A1AP
MDM2
PTPRF
LTBP2
RPS6KC1
TXNRD1
SKIL
SUMF1
EFNA3
RAE1
MTRNR2L3
WBP2
MTHFR
CLCN6
ATF3
SLC35B1
LY6L
SYNGAP1
PHF1
CUTA
NECTIN4
ZBTB7B
LENEP
IL1R1
ZZZ3
SPIDR
MED11
CLCN7
HES1
SMARCD2
FRG2
USP49
TOMM22
SCHIP1
C1orf174
DDX42
CCDC47
SRSF1
RPUSD4
FAM118B
C8orf33
ILF3
RIOK2
TNS3
STARD3
PPP1R1B
MEOX1
TRIB1
SPTAN1
ISY1-RAB43
ISY1
POLR3F
DZANK1
SERPINI1
PDCD10
PRR5L
COMMD9
RBBP5
SOCS2
RAPGEF3
RXRA
ABCC10
ELF3
CDKN1A
UAP1L1
MAN1B1
GPRC5A
UBE2H
TOX2
STX16
LZTR1
STAT6
TSR3
GNPTG
ATP6V1G1
MACC1
MAMDC2
THAP7
ANGPTL4
POLR2J2
VPS50
HEPACAM2
UNC13D
TRIOBP
CD55
LIMA1
NOL4L
ATG16L2
GADD45A
RHOBTB2
VPS33A
DYNLRB1
APOBEC3B
POLR2J
ESRP2
UNKL
FAM72C
FOXJ1
IRF2BP2
PIP4P1
OSGEP
AVEN
APEX1
SRGAP2B
FAM72D
SQSTM1
ZNF335
SLC35A5
ATG3
ATAD2
RARB
TRIM29
TMC7
TRMT2A
RANBP1
MUC3A
FLOT2
DHRS13
CCDC59
EN2
PGLYRP4
ZNF358
MCOLN1
FANCA
NOXO1
INO80C
PSMB7
CLPTM1
APOC2
PCIF1
AURKAIP1
SUPV3L1
SUPT6H
SMYD1
SDF2
MYCL
GSR
MOCS3
DPM1
SNRPE
PPCDC
TFPT
PRPF31
DMAC2
ANXA2
CARD16
RIPOR3
IDH3B
RPS26
SLC25A11
RNF167
PFN1
PISD
RAD9A
PPP1CA
TRA2B
DAZAP1
PDGFB
RDH5
ITGA7
BLOC1S1
SPINK1
SMN2
SMN1
FCGR1A
LGALS8
REN
ERICH4
YJU2
IRF2BPL
NUP214
PURB
MRTO4
EMC1
SRGAP2
FAM72A
TBRG4
WASHC5
NSMCE2
SPIRE2
LYPD6B
VIRMA
PHRF1
BCKDK
FXYD3
ZNF408
ARHGAP1
ELFN2
C5orf51
SALL4
RGS3
XPO7
DOK2
UPP1
CLN3
APOBR
TRAF4
HPS5
GTF2H1
BRF1
SRI
PDZK1IP1
TPP1
TAF10
PDAP1
BUD31
SLC25A53
FAM199X
TBL2
TSFM
TOP3A
SMCR8
SENP1
PFKM
ARID3A
TMEM205
RAB3D
CCDC159
YAP1
CYP2A13
ZBTB7C
ZNF789
ATP5MF-PTCD1
ATP5MF
CDKAL1
PRICKLE1
MIER1
DNAI4
MRPS7
MIF4GD
GLTP
GGA3
OSER1
SLC25A45
FRMD8
RMND5B
ENTPD4
MFSD1
PPP6R1
ITGB5
ZNF165
SAP30BP
RECQL5
OR1F12
LAMA3
CASC3
RDX
PTK2
NME1-NME2
NME1
DOK7
UXS1
SLC4A2
CDK5
C8orf74
GFM1
SLC27A5
SLIRP
ALKBH1
PAXBP1
TRMT1
NACC1
INMT
ASIC3
SHLD2
GLUD1
CELA3B
C16orf91
ZSCAN22
CORO7-PAM16
CORO7
RARG
EAPP
TXN2
MMP13
U2SURP
GPR182
CEP162
ZNF585B
ZNF383
IER3
FLOT1
WSB2
HUS1
UBE3C
SRP9
ZDHHC6
VTI1A
ATP6V0C
AMDHD2
ST7
EIF2D
CDK12
PRKAG2
MINDY4
FZR1
PTBP1
OPN1MW3
OPN1MW2
OPN1MW
ARHGAP32
TJP2
TAS1R1
NOL9
MB
WWOX
KAT8
GP1BA
AXL
ZSCAN25
TBC1D30
GNS
CCDC88B
MYLK2
BCL2L13
DENND2B
BIRC2
PMS1
ORMDL1
TMCO6
NDUFA2
IK
MTRNR2L9
KALRN
ZBTB45
SMG7
PLAGL1
STAU2
GATB
ANXA10
FGGY
KRT1
MLLT10
MEF2C
HERC3
DIP2A
SPAG16
ITFG2
MEMO1
SSUH2
TM2D2
MRPS15
MED1
ADAM9
FAM83A
GTPBP6
KRR1
KLF9
SUSD4
ANKS6
SUMO3
UBE2B
CDKL3
KIF25
RHEBL1
PNP
OSBPL2
ERAP1
RTF2
DOHH
CLSTN1
DOK3
DDX41
FNTA
DNAJC11
PXN
JMJD7-PLA2G4B
JMJD7
RBPJ
NUP107
ZNF668
ZNF646
VAC14
SEPTIN5
GP1BB
INTS10
TMEM40
TJAP1
SH3GL1
DICER1
DERL3
CHAF1A
TEX28
SLC35F6
PSME3
BECN1
OAZ1
KLF6
SLC16A5
KLF10
E2F6
ZMYND8
EPHB3
NDUFA4
SPRED2
PHAX
ALDH7A1
ZNF576
IRGQ
GRAMD2B
ARID2
ATG9B
ABCB8
FRMPD1
RPS5
LANCL2
KRT31
ECH1
FSCN1
LRRC47
ACVR1B
UBAP2L
C1orf43
SEMA3B
LSMEM2
SSBP1
ADGRB3
PTPRR
TIPARP
RNF223
MOB1B
CCDC97
PSMA1
THOP1
SGTA
COL23A1
TGFB2
GAMT
CALML5
ARID5B
RAD51AP1
C12orf4
TNNC2
RRP15
RGS20
PLEC
UBE2I
HNRNPH2
CRYAA2
CRYAA
RHCE
TNC
PMEPA1
KANSL3
FER1L5
SLK
CSRNP1
SRGAP2C
KCNMA1
FAM72B
PTPN6
C12orf57
STX1A
UBAP1
SUMO2
NGDN
BANP
ALG6
THEMIS2
PARD6B
HM13
SULT2A1
FASN
SCAMP5
BSG
ADAMTS14
PPWD1
CENPK
UBQLN1
KDM7A
WDR62
THAP8
OTUD7A
SSH1
OSBPL7
MRPL10
LRRC46
LRFN4
PLA2G4B
BUB1B
ETV4
THRAP3
VGLL4
USP30
XRCC5
VASH2
MRFAP1L1
BLOC1S4
SLC33A1
CMIP
BIRC3
ADAM23
NGB
SCRN2
NAPB
PYURF
PIGY
EPS8
C19orf33
NEK6
ADARB1
GRAMD1C
PDCD6IP
SPATC1L
RPTOR
RABGAP1L
HNRNPF
KYAT1
STX6
GPATCH3
SMARCA4
TMEM63A
SF3A3
TACC1
SRCIN1
H2BW2
BAIAP2
HMOX1
RAB3IP
ATG14
SLCO4A1
LARP1
ZNF514
ZNF2
FLYWCH1
TMEM248
PSMD1
LNX1
TMEM116
ERP29
ADGRL1
VPS11
CRTC1
ITGB3BP
EFCAB7
CACTIN
ZNF865
ZNF524
IGLL5
FIZ1
NUGGC
ELP3
TGIF1
ARHGEF7
RNPEPL1
EIF5A2
DUSP28
ANKMY1
TMEM208
LRRC29
SLC6A9
DPH2
B4GALT2
ATP6V0B
DENR
PPP5D1
CALM3
SNX21
MYL12A
BNIP3L
GPN2
C5orf63
TBC1D2
HR
ATP6V1H
TANGO2
ARVCF
PRMT3
FOXO6
SEMA5B
FBXO46
PLD1
CPA1
RINL
STMN3
RTEL1
HEYL
REEP4
NKD2
DUSP6
NUDCD3
MAP3K7
MRPS11
MRPL46
KRT86
NFE2
BAX
BCAS1
KSR1
PEAK1
HMG20A
GRAMD1A
ECHDC1
ZNF497
A1BG
SBK1
FAIM
DNPEP
NSD1
NIBAN2
ZCCHC4
ATP13A3
STRA6
GSN
KDM3A
QRICH1
SYNGR3
GFER
PLEKHG3
TRUB2
DBNDD2
COQ4
TCAF2
RPL23A
RAB34
PROCA1
MAFK
C1orf116
BTBD6
NPEPPS
NDST1
OR9A4
OAZ3
MRPL9
SCYL3
RMND1
ARMT1
NCBP2AS2
NCBP2
ENO3
PSMD5
PPP1R15A
EIF3F
TNPO3
PPP1R11
TEX46
KDM1A
AP2A2
PHF19
PTP4A3
ATN1
PRKRIP1
TFDP1
FEM1A
DDX23
VWA7
RHOD
NOL8
CENPP
LPCAT3
HNF4A
RGS14
LMAN2
GRHL1
ARMCX5-GPRASP2
RELN
PUS10
PEX13
NDUFAB1
TMEM18
PPL
LYPLA1
EIF1AD
CST6
BANF1
PTPRH
POLD4
NOP16
HIGD2A
TMCC3
MTUS1
LFNG
ITPK1
GOLGA7B
DNAJC30
BUD23
METTL1
EEF1AKMT3
DDX46
CYP27B1
PRSS22
HSPB1