ChIP-Atlas: Target genes

Potential target genes for HDAC3

Query protein: HDAC3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5930140 | RH-4
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
HDAC3's Target genes

◢ HDAC3: Average

◢ SRX5930120: Acute myeloid leukemia

◢ SRX5930121: Acute myeloid leukemia

◢ SRX017705: CD4+ T cells

◢ SRX5457145: K-562

◢ SRX5457146: K-562

◢ SRX8976672: KYSE-410

◢ SRX8976673: KYSE-410

◢ SRX8976674: KYSE-410

◢ SRX8976675: KYSE-410

◢ SRX8976676: KYSE-410

◢ SRX8976677: KYSE-410

◢ SRX8976678: KYSE-410

◢ SRX8976680: KYSE-410

◢ SRX10045306: LNCAP

◢ SRX10045307: LNCAP

◢ SRX3401278: MCF-7

◢ SRX3401281: MCF-7

◢ SRX2140209: MM.1S

◣ SRX5930140: RH-4

◢ SRX5930141: RH-4

◢ SRX059713: VCaP

◢ SRX059714: VCaP

◢ HDAC3: STRING

MTRNR2L2
MSH3
DHFR
DUX4
ARID3B
EN2
HEXA
FRG2C
PNMT
MTRNR2L8
MYLK2
PURB
LAMP1
ENTPD4
WASHC2A
TGFB2
WASHC2C
FRG2
PDGFB
MTRNR2L1
AP5Z1
IFIT1
TMCC3
BRF1
BTBD6
MEOX1
DERL3
HEYL
ERCC1
TRIL
SPATA25
NEURL2
CTSA
ZSWIM1
TNC
ZHX2
ADAMTS14
CORO7-PAM16
CORO7
VASH2
TNNC2
SNX21
DOCK10
MSS51
ZNF668
ZNF646
CLCN7
ANGPTL4
WBP1L
CELA3B
MACC1
ARID5B
PIPOX
BHLHE40
RGMB
C1QTNF1
COL23A1
CRIP2
AFAP1
HMGCS2
CSNK2A3
KCNMA1
KLHL41
OR4D6
XRN1
SUMF1
TMEM91
B9D2
ZAR1L
BRCA2
THEMIS2
GPSM1
BCAR3
DYNLRB1
RBFOX2
PPCDC
STRA6
BMERB1
RNASEH2C
KAT5
TMEM239
C20orf141
RIPOR2
ARHGAP25
SYNPO
TRMO
FADD
STBD1
SLC1A7
RINL
IGLL5
DENND2B
LCA5
ITM2C
B3GLCT
PVALEF
AATK
ADGRF1
PTCH1
GADD45A
OR51T1
TLCD4
GFRA1
ATP6V0D1
AGRP
PRR5L
COMMD9
SLC35A5
ATG3
CLN3
APOBR
ABCC10
IFNLR1
TGIF1
CLDN5
RBPJ
FHL1
PYCR1
MYADML2
NAV2
FRG2B
LTBP1
STUM
SLC27A1
SULF1
FCRLA
BCAT1
RHEBL1
NFIB
PTPRD
SSU72
CDRT4
PALM2AKAP2
BCHE
TRIOBP
GBA
SLC8A3
CD82
TNNT1
TNNI3
PRL
FREM1
NTRK1
INSRR
FOXB2
MYPN
GET4
ATRN
MYEOV
EPHA2
SPG21
PROM1
COL1A1
SMYD1
CLIP1
IQSEC1
SACS
ARHGAP28
MFSD2A
MTUS2
CYB5R1
ADIPOR1
UXS1
FSCN2
FRMPD1
FHL2
SLC19A3
ECT2L
NAV1
MYOG
NOTCH2
EPB41L3
TP53AIP1
TMEM120B
GPR61
DOK7
NNAT
BLCAP
TNNI1
NOTCH2NLA
MUSTN1
ITIH4
PCBP4
GPR62
FLCN
EXOC7
ADAM12
CMTM2
HDAC9
TBL1X
PEDS1-UBE2V1
PEDS1
HAGH
FAHD1
ACSS1
RMI1
HNRNPK
ARHGEF2
SYT8
B3GALT5
SCHIP1
UPP1
HMOX1
PALLD
ARL14EP
ZNF92
LMCD1
RHOQ
ATP6V1E2
TMCC2
MYBPC2
VGLL4
ZNF507
TCAF2
E2F2
PLAGL1
ITSN2
ATP6V0C
AMDHD2
SPAAR
HRCT1
PRRC2B
ARHGAP31
TES
DHRS3
WSB2
HERPUD2
SLC12A3
TCF4
MFSD1
PAFAH2
KRT86
TMEM205
RAB3D
CCDC159
DTNA
HPCAL1
LGI2
PROX1
SH2D7
JUP
PDZRN3
UNKL
ASF1B
ASB2
NAGPA
RDH5
ITGA7
BLOC1S1
SELENOW
RFTN1
TBC1D2
LIMK1
C20orf204
DPYD
CDH7
SLN
RRAGC
RBM20
ANKRD1
SBK3
SBK2
RNF150
BCL3
RIOK2
ARID3A
MAP3K7CL
SPNS1
LAT
SMARCD2
SEMA5B
CHMP1B
HHIPL2
VPS33A
DAB2IP
RPL24
TSPAN12
RIPOR3
MYOD1
CELA2A
HNRNPLL
NDUFA4
CPA5
HNRNPH2
KDSR
SPON2
TBC1D9
KSR1
CCIN
OR6M1
TMEM242
WRNIP1
MYLK4
PTGIS
BAX
GGA2
SYN2
LRRC47
RPS7
NUTM2F
CREB5
IL32
TCF7L2
P2RY1
PHRF1
AKAP11
PRUNE2
ITGB3BP
EFCAB7
LURAP1L
BMP7
LRIG1
MYCN
RASGRP3
MYO18A
TMEM259
CNN2
TNRC6B
ABLIM1
NES
RASGRP4
RYR1
GIT2
ANKRD13A
SEC22B
TNFSF15
ENGASE
PCIF1
TBC1D5
C1QTNF2
SHB
ACTC1
ID3
AGTR2
UBE2Q1
CHRNB2
PHC2
NOTCH2NLB
ZNF285
TMEM40
NEK6
MLH3
SKP2
LMBRD2
CEP41
SYNPO2L
MYOZ1
FLRT3
CYP27C1
SPINT2
CELA3A
KLF3
SOBP
MUC3A
RMND1
ARMT1
TRIM16L
APOE
APOC1
HIF3A
FAM200B
KRTAP2-4
TMEM167B
CCN2
SLC44A1
ALK
HES1
PHLDB2
USP2
MAMDC2
KANK2
CELA2B
SVIL
UCHL5
RO60
KANSL3
FER1L5
EZR
TP53INP2
NUP50
AMPD3
INTS10
IGDCC4
OPRD1
UBL7
ATF3
SSBP1
KDM3A
CELF2
FAM193B
STX11
S100A2
IFNAR1
NUDT4B
SLC38A8
FGF6
LBH
GNAI1
OR14K1
OR14A2
DDX60L
WBP2
SRP9
BAIAP2
HRH1
PPP6R1
BAHCC1
DAPK1
NUTM2G
TSPAN31
MARCHF9
CDK4
MYL5
ATP5ME
ACOT9
RERE
SLC22A4
MYH7
NNMT
EYA1
DMD
MYL12A
DAG1
TMEM82
SLC25A34
NPEPL1
ANKK1
CRACR2A
SORCS1
MYCL
SPATC1L
SH3PXD2A
SRP68
PTK6
ARMCX5-GPRASP2
MXRA7
CNN3
ARMCX5
NAPA
CRYGN
TNNT2
NAA38
VSTM2L
CHD3
G2E3
PLEC
ZBTB18
RAPGEF1
FGF16
MRPL23
ACVR1
LRFN4
SREBF1
VTA1
NMBR
SYNJ2
GDNF
MCU
MAST4
ZNFX1
MYBPHL
PKMYT1
CADM2
RXRG
UBE2V1
CNBD2
SPATS2L
OCLN
MINDY2
JPH2
NTSR1
CKMT1B
WNT1
MSGN1
PLXNB2
SEMA3D
MAPK10
CHST12
INTS12
GSTCD
YARS1
S100PBP
ZNF358
MCOLN1
SSUH2
SSTR5
PRKAG3
KCTD14
ADCY7
PAG1
TP53BP1
RGS12
RALGDS
LNX1
TP53I3
SF3B6
FAM228B
PUSL1
ACAP3
CGGBP1
C3orf38
SERINC2
BMP5
SYTL2
CPD
RCN1
ATOH8
HS1BP3
LRRC17
TLN2
PAQR8
CASP3
USPL1
HMGB1
NPAS4
KANSL1
CHN1
ZCCHC24
SPRY1
SYNE3
TBX2
IRF2BPL
GSN
ERICH1
CDYL
SNRPB2
COG2
SLC38A10
ASB4
ATP6V1C1
IFT52
STYXL2
GPA33
ZNF335
CPA1
PLAU
PLPPR1
CDH13
SLC7A5
LAMB1
ERI1
LSM12
G6PC3
RPA3
SUPT7L
SLC4A1AP
TEX46
KDM1A
INKA2
ARID5A
IZUMO2
NUDCD3
CCNG2
COL16A1
CHD2
SPRED2
BTG2
SOX8
SLC1A5
ENTPD2
LMF1
CARD16
AMOTL1
PPIP5K2
GIN1
MCIDAS
SYTL3
PPP1R3A
CCNO
CT55
CNTN6
MTBP
MRPL13
STK24
FOXN3
ABHD2
EXOC2
AADACL4
ZBTB21
MGP
SPATA13
KLHL12
NFIC
TBC1D19
WSCD1
LIN7C
NOL4L
TRIP4
PCLAF
FSCN1
SERP1
EIF2A
SYCP2
FAM217B
MED18
CARD10
IER5
IFNAR2
PPP1R3D
TYMS
TLR9
DCBLD2
C1QTNF7
AVEN
DICER1
ZNF280A
C1orf226
FAM184B
PBK
ARL6IP1
RPS15A
AMZ1
ANXA6
UTP3
COMMD4
BMF
ZNF555
RASL11B
GXYLT2
MLLT6
CR1L
MAMSTR
SEM1
DZIP3
CIP2A
TMEM131
SOAT2
IGFBP6
ODF2L
RBM43
HOXC13
NFKBIZ
SSBP2
CA11
TACR3
TDRP
TNPO3
PTP4A1
FLNC
GNA12
C10orf67
GCK
LPCAT1
CASD1
EFNA5
RAD9A
PPP1CA
ST7
ADGRF3
WRN
PURG
TANK
RNF183
MTHFD2L
CEP162
VPS11
TUFT1
RGS19
OPRL1
LKAAEAR1
EHD1
TMBIM4
TM4SF4
AEBP2
SLF2
F7
MDM2
SPRY4
VAMP5
SIX1
COL4A2-AS2
VAMP8
NCAM1
HAAO
LYSMD2
CLMN
FRY
TMOD2
MAB21L3
FBXW4
CCNI
TRIM62
ST3GAL5
VWA3B
ASB18
FIP1L1
LTBP2
OBSL1
PROSER1
NHLRC3
ZNF622
RGS20
ATP6V1H
RARA
CCDC174
COX7A2
BCAM
BGN
PEX19
MOCS3
DPM1
PCBP2
ARHGEF10L
NBL1
JDP2
RAP1B
ZNF512
C2orf16
ARID2
MAP3K7
ZNF205
NOXO1
SYNGR3
GFER
CAND1
ANKRD12
NUP42
SCAF1
RRAS
ERCC2
PSMA5
RPUSD4
FAM118B
PIP4P1
OSGEP
APEX1
PNP
THAP1
MTF2
C1orf198
CDC42EP3
IGSF10
AZIN1
PSEN2
TBC1D13
SLC4A2
CDK5
ASIC3
RRP15
MARCHF8
TRMT5
SLC38A6
MME
IFFO1
ARFGAP1
GABARAP
PHF23
DVL2
RBM48
PEX1
TPP1
TAF10
FAM151B
CDH11
ZNF32
CHMP2B
AFF1
BIN1
CCDC9B
PCNX1
GAS1
ARID1A
ABCC3
MIDEAS
MAD2L2
TNNI2
MAP1LC3C
KLHL30
DRAXIN
WDR11
WNT10A
KREMEN1
HSPB2
CRYAB
C11orf52
EHD2
MB
E2F6
CACYBP
GTF2B
POLR2E
GPX4
GPR146
TEX36
PSME1
FITM1
SIGLEC11
ZADH2
TSHZ1
UVRAG
ITPK1
MNAT1
RRN3
ZNF385A
SH3BP4
EAPP
SMAD3
PPP4R3B
SPATA9
RHOBTB3
KIF17
MATN1
RRAD
CIAO2B
CES2
CDH16
LRRC58
VAMP2
PER1
MUSK
DARS1
AGAP2
NLRP6
PLEKHS1
CDK5RAP2
GRN
DNTTIP2
CD44
PSAP
NR2E3
DBF4B
UQCRHL
SH2B1
MSL2
PPP3CA
UBB
STAT1
CEP68
RBMS3
SF3A3
PIH1D2
NKAPD1
LIX1L
CTR9
NPPC
ERFE
CHRNG
SEPTIN9
SLC2A10
ARMC8
FLYWCH2
LOC389831
STARD3NL
TRMT10B
THAP10
LRRC49
RIMS4
CASQ2
WBP11
C12orf60
SLC17A4
MRAP
LOC102724770
DGCR6
AP3S2
RPL22L1
FANCC
VGLL3
NFIA
RAPGEF4
KCTD9
CDCA2
EGFR
ZNF593
C1orf232
FAM110D
SH2D3C
PEX3
ADAT2
PPM1D
CDK9
THUMPD3
SIRT2
NFKBIB
NAGLU
SPTAN1
RGS3
LFNG
POLR2M
PALD1
FAM120B
DLL1
DENND2A
RTKN
MAP2K3
SLC12A7
C22orf31
TTC30A
LOXL1
DNASE1
TUBA1B
ATP6V1G1
LOC388282
CCDC200
CCDC146
SETD5
GPR153
GGTA1
N4BP2L2
PFDN4
MYL12B
MTMR9
KCNF1
KRTAP5-3
KRTAP5-2
TMEM61
PLAAT5
HUNK
MBNL2
DAPK3
CAVIN4
EXOSC8
ALG5
ANXA2
WASHC5
NSMCE2
INMT
WDR5
PNPT1
TPM2
LOC100421372
HSPA14
ERBB4
CDNF
KYAT1
ALDOA
ERCC6L2
POMZP3
MEF2D
EVPL
ZNF212
TUBG1
RETREG3
CCDC15
CDC7
LOC112694756
IL26
EFHC1
SLC13A3
TP53RK
PGF
MPRIP
ABCA4
AP5S1
HNRNPD
MRPL44
MATR3
ESPNL
PLEKHD1
MYOF
CEP55
RBBP5
TSR3
GNPTG
TBC1D30
GNS
BCL2L13
EPS8
ATP6V1E1
JMJD1C
ST3GAL4
SELENOT
THADA
FREM2
KIF16B
ZNF143
ICA1L
VPS50
HEPACAM2
PPL
COX16
SLC35E2A
NUP205
SPACA6
ANKRD40
NKAP
SLC22A8
METTL15
KIF18A
GBX2
SGIP1
CEP63
ANAPC13
DCLRE1B
AP4B1
HOXA3
HOXA4
HOXA5
STK36
RNF25
LSMEM1
SLC25A26
PRDM12
NOTUM
STXBP5
ZNF644
SLAMF1
TMEM39B
MRPS18A
MTMR14