ChIP-Atlas: Target genes

Potential target genes for HDAC3

Query protein: HDAC3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10045307 | LNCAP
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
HDAC3's Target genes

◢ HDAC3: Average

◢ SRX5930120: Acute myeloid leukemia

◢ SRX5930121: Acute myeloid leukemia

◢ SRX017705: CD4+ T cells

◢ SRX5457145: K-562

◢ SRX5457146: K-562

◢ SRX8976672: KYSE-410

◢ SRX8976673: KYSE-410

◢ SRX8976674: KYSE-410

◢ SRX8976675: KYSE-410

◢ SRX8976676: KYSE-410

◢ SRX8976677: KYSE-410

◢ SRX8976678: KYSE-410

◢ SRX8976680: KYSE-410

◢ SRX10045306: LNCAP

◣ SRX10045307: LNCAP

◢ SRX3401278: MCF-7

◢ SRX3401281: MCF-7

◢ SRX2140209: MM.1S

◢ SRX5930140: RH-4

◢ SRX5930141: RH-4

◢ SRX059713: VCaP

◢ SRX059714: VCaP

◢ HDAC3: STRING

GET4
HEXA
DUX4
UBE2Q1
CHRNB2
TSPAN31
MARCHF9
CDK4
SYNGAP1
PHF1
CUTA
AP5Z1
ILF3
HPS5
GTF2H1
ALLC
MTRNR2L1
UVRAG
LAMP1
RNASEH2C
KAT5
AVPI1
PIP4P1
OSGEP
APEX1
RPL5
FRG2C
SPATC1L
ATP6V0D1
AGRP
WASHC2C
WASHC2A
PGK1
PRR5L
COMMD9
MTHFR
CLCN6
CTDP1
SPNS1
LAT
YJU2
TRMO
THRAP3
PNP
FLT4
KDM4C
NDUFS7
EIF2S1
ATP6V1D
WDR62
THAP8
TOR1AIP2
TOR1AIP1
UBE2B
CDKL3
RPUSD4
FAM118B
HOOK2
CHMP7
CCDC90B
CLN3
APOBR
LOC102724770
DGCR6
GABARAP
PHF23
DVL2
MTRNR2L8
HDAC2
ART1
MED11
ZMYND15
CXCL16
PLAA
IFT74
RNASEK
C17orf49
TMEM259
CNN2
CSDE1
TPP1
TAF10
ITFG2
LTA4H
HAGH
FAHD1
EAPP
TPR
ODR4
C8orf37
UBAP2
FNTB
SMG7
FEM1A
FBXL19
FRG2
PIK3R3
CACYBP
ZNF672
AFF4
DUS3L
PRR22
LARS1
WDR24
ARF4
PPRC1
FANCF
CEP162
OXNAD1
DPH3
GBA
SULT1A4
SULT1A3
SLX1B
SLX1A
BOLA2B
BOLA2
GSTA4
CORO1A
PDXDC1
ATL1
MAP4K5
MSL2
RPS29
RAD9A
PPP1CA
SHC1
CKS1B
FLAD1
VPS33A
MTF2
PRKCI
NME1-NME2
NME1
NUF2
COL6A2
MLH1
EPM2AIP1
PHRF1
MTRNR2L2
MSH3
DHFR
KLHL12
THG1L
PHLPP1
SRA1
SLC35A4
APBB3
RFXANK
BORCS8
TMEM116
ERP29
CHD1
RPEL1
VEZT
FGD6
RNF169
ATP5MC2
GABPA
ATP5PF
CDIP1
GTPBP8
TMED4
DDX56
USPL1
HMGB1
HACD2
SLC38A7
NSUN4
QTRT2
CCDC191
EFHC1
WDR74
STX5
LONP1
CATSPERD
EED
CEP70
USP35
KCTD21
GOSR2
ALG14
ZSCAN22
CUL5
PIDD1
RPS27
RAB13
PNPLA2
ZNF140
RPLP2
MMADHC
ISY1-RAB43
ISY1
SNRPE
TFPT
PRPF31
ZMPSTE24
TMCO2
B9D1
FRMPD1
LMOD1
TIMM17A
GLIPR1L2
TRIM3
TIMM10B
ARFIP2
PHYKPL
SESN1
CEP57L1
RPL27
IFI35
CBWD5
SLC35A5
ATG3
PRORP
PPP2R3C
EIF2AK3
BOLA2-SMG1P6
CCDC146
LAMTOR5
CDK19
AMD1
CLSTN1
PMVK
PPIP5K2
GIN1
TSACC
CCT3
LANCL2
NCBP2AS2
NCBP2
C6orf47
BAG6
APOM
PCYT1A
UBQLN1
SLC33A1
METTL1
EEF1AKMT3
CYP27B1
STOML2
PIGO
C5orf51
CPEB4
UBAP2L
C1orf43
TUFT1
CYCS
CCT2
ESCO1
TIMM13
GTF3C5
PPP1R2
UBE2J2
TIMM22
AATF
USE1
NUDT15
TMEM242
H4C15
H4C14
H3C15
H3C14
H2AC19
H2AC18
TTI2
UNKL
C16orf91
NSA2
GFM2
CCNL1
SP2
TOGARAM1
KLHL28
INTS8
RFX1
TM9SF4
FUS
UFSP2
C4orf47
ZNF789
ATP5MF-PTCD1
ATP5MF
TASP1
TNFRSF19
HSPA5
SLC35B1
ARL14EP
PRMT2
HOXC13
SIRT4
WDR36
NCSTN
COPA
USP42
MFSD1
TTC32
THAP6
MRPL54
APBA3
ACAD9
RAX2
DAD1
ABHD4
CCDC59
USP21
PPOX
WARS2
ATP6V1G1
PMF1-BGLAP
PMF1
ARMCX5-GPRASP2
BMS1
BHLHB9
GPRASP2
RPL35A
IQCG
LMLN
EIF3E
DBT
PDIA5
SRPRB
BNIP3L
GBE1
FITM2
IDE
TIPARP
SCAF11
INTS7
DTL
C10orf88
SLC17A7
PIH1D1
ALDH16A1
DUSP12
SUPV3L1
CRYAA2
CRYAA
VHL
PDCL3
PEF1
MPP3
CD300LG
MTBP
MRPL13
C12orf66
RINT1
PUS7
CLTC
EIF4G2
CLPB
TBRG4
PPP2R5A
THAP9
SEC31A
ARIH1
RPS26
RPL21
OXSR1
OSGIN1
DCAF8
GOLGB1
SPG11
MRPL45
TRAPPC9
PEX12
AP2B1
STMP1
PRCC
ORC4
MBD5
STAM
SKA3
MRPL57
SMIM4
NT5DC2
SPATA25
NEURL2
CTSA
ZSWIM1
PMEL
NEMF
RAB5B
CDK2
CBWD3
HSPH1
TMX2
MED19
SDR39U1
ZCCHC7
PDE4DIP
LGALS8
SF3A3
SERINC4
SERF2
HYPK
EIF3F
EEF1AKNMT
KLHL32
PCBP4
NDUFAF4
SLC35E2B
ACY1
ABHD14B
ABHD14A-ACY1
ABHD14A
TESK1
RPL22L1
EXD1
CHP1
PSMC4
WDR89
FIS1
CLDN15
NFX1
EIF3L
ANKRD54
NDUFA6
DARS2
CENPL
PPP2R1A
SMIM13
TVP23B
INO80C
UFD1
CDC45
ATG5
MOK
C17orf97
SRP9
VARS2
GTF2H4
N4BP2L2
ORC2
GTF2H2
GTF2H2C_2
ARMC5
TMEM52
OSCP1
ECH1
CHEK1
SRFBP1
CCDC15
TMED10
ZNF736
LOC101928764
EID1
FBXL18
KAT7
TTC37
ARSK
PDE12
NUP214
SSBP1
DDX18
RFC2
PPIG
LUC7L2
FMC1-LUC7L2
FMC1
RRM1
MRPS7
MIF4GD
GGA3
SELENOH
HMGB2
SETD4
CBR1
CEP350
RETSAT
IKZF3
ARID3B
MYEOV
ERBB2
PDXK
PNMT
MIEN1
ALDH18A1
GRB7
HNRNPA2B1
CBX3
SLC39A10
ELP5
CTDNEP1
EPC2
WDTC1
SLC45A4
DDX17
NUDT3
STRBP
BHLHE40
SLC25A25
NAIF1
TES
SEPTIN7
TMEM199
SEBOX
POLDIP2
KIF5C
WASF2
TCAP
ERAL1
ERCC1
SSH3
POLR2J3
IRS2
KCNK4
GPR137
BAD
ID1
SFSWAP
SERPIND1
GSK3B
PGAP3
DHRS3
NAGPA
TET3
RSF1
AAMDC
CD300LF
MSMO1
CRBN
RPGRIP1L
FTO
RGPD2
RGPD1
UBE3B
DAGLA
RALGDS
GRHL2
RBBP8NL
RBM48
PEX1
SEPTIN9
BCL3
ASB2
PSMD3
SUPT7L
SLC4A1AP
MDM2
PTPRF
LTBP2
RPS6KC1
TXNRD1
SKIL
SUMF1
EFNA3
RAE1
MTRNR2L3
WBP2
ATF3
LY6L
NECTIN4
ZBTB7B
LENEP
IL1R1
ZZZ3
SPIDR
CLCN7
HES1
SMARCD2
USP49
TOMM22
SCHIP1
C1orf174
DDX42
CCDC47
SRSF1
C8orf33
RIOK2
TNS3
STARD3
PPP1R1B
MEOX1
TRIB1
SPTAN1
POLR3F
DZANK1
SERPINI1
PDCD10
RBBP5
SOCS2
RAPGEF3
RXRA
ABCC10
ELF3
CDKN1A
UAP1L1
MAN1B1
GPRC5A
UBE2H
TOX2
STX16
LZTR1
STAT6
TSR3
GNPTG
MACC1
MAMDC2
THAP7
ANGPTL4
POLR2J2
VPS50
HEPACAM2
UNC13D
TRIOBP
CD55
LIMA1
NOL4L
ATG16L2
GADD45A
RHOBTB2
DYNLRB1
APOBEC3B
POLR2J
ESRP2
FAM72C
FOXJ1
IRF2BP2
AVEN
SRGAP2B
FAM72D
SQSTM1
ZNF335
ATAD2
RARB
TRIM29
TBL1X
TMC7
TRMT2A
RANBP1
MUC3A
FLOT2
DHRS13
EN2
PGLYRP4
SKIDA1
ZNF358
MCOLN1
FANCA
NOXO1
PSMB7
GET3
CLPTM1
APOC2
PCIF1
AURKAIP1
SUPT6H
SMYD1
SDF2
MYCL
CYP27C1
GSR
MOCS3
DPM1
PPCDC
DMAC2
ANXA2
CARD16
RIPOR3
IDH3B
SLC25A11
RNF167
PFN1
PISD
TRA2B
DAZAP1
PDGFB
RDH5
ITGA7
BLOC1S1
SPINK1
SMN2
SMN1
FCGR1A
REN
ERICH4
IRF2BPL
PURB
MRTO4
EMC1
SRGAP2
FAM72A
WASHC5
NSMCE2
SPIRE2
LYPD6B
VIRMA
BCKDK
FXYD3
ZNF408
ARHGAP1
ELFN2
SALL4
RGS3
XPO7
DOK2
UPP1
KMT2E
TRAF4
BRF1
SRI
PDZK1IP1
PDAP1
BUD31
SLC25A53
FAM199X
TBL2
TSFM
TOP3A
SMCR8
SENP1
PFKM
ARID3A
TMEM205
RAB3D
CCDC159
YAP1
CYP2A13
ZBTB7C
CDKAL1
PRICKLE1
MIER1
DNAI4
GLTP
OSER1
SLC25A45
FRMD8
RMND5B
ENTPD4
PPP6R1
ITGB5
ZNF165
SAP30BP
RECQL5
OR1F12
LAMA3
CASC3
RDX
PTK2
DOK7
UXS1
SLC4A2
CDK5
C8orf74
GFM1
SLC27A5
SLIRP
ALKBH1
PAXBP1
TRMT1
NACC1
INMT
ASIC3
SHLD2
GLUD1
CELA3B
CORO7-PAM16
CORO7
RARG
TXN2
MMP13
U2SURP
GPR182
ZNF585B
ZNF383
IER3
FLOT1
WSB2
HUS1
UBE3C
ZDHHC6
VTI1A
ATP6V0C
AMDHD2
ST7
EIF2D
CDK12
PRKAG2
MINDY4
FZR1
PTBP1
OPN1MW3
OPN1MW2
OPN1MW
ARHGAP32
TJP2
TAS1R1
NOL9
MB
WWOX
KAT8
GP1BA
AXL
ZSCAN25
TBC1D30
GNS
CCDC88B
TRIP4
PCLAF
MYLK2
BCL2L13
DENND2B
BIRC2
PMS1
ORMDL1
TMCO6
NDUFA2
IK
MTRNR2L9
KALRN
ZBTB45
PLAGL1
STAU2
GATB
ANXA10
FGGY
KRT1
MLLT10
MEF2C
HERC3
DIP2A
SPAG16
MEMO1
SSUH2
TM2D2
MRPS15
MED1
ADAM9
FAM83A
GTPBP6
KRR1
KLF9
SUSD4
ANKS6
SUMO3
KIF25
RHEBL1
OSBPL2
JUNB
ERAP1
TRIM16L
RTF2
DOHH
DOK3
DDX41
FNTA
DNAJC11
PXN
JMJD7-PLA2G4B
JMJD7
RBPJ
NUP107
ZNF668
ZNF646
VAC14
SEPTIN5
GP1BB
INTS10
TMEM40
TJAP1
SH3GL1
DICER1
DERL3
CHAF1A
TEX28
SLC35F6
PSME3
BECN1
OAZ1
KLF6
SLC16A5
KLF10
E2F6
ZMYND8
EPHB3
NDUFA4
SPRED2
PHAX
ALDH7A1
ZNF576
IRGQ
GRAMD2B
CCNT1
ARID2
ATG9B
ABCB8
RPS5
KRT31
SPHK2
FSCN1
LRRC47
ACVR1B
SEMA3B
LSMEM2
ADGRB3
PTPRR
RNF223
MOB1B
CCDC97
PSMA1
THOP1
SGTA
COL23A1
TGFB2
GAMT
CALML5
ARID5B
RAD51AP1
C12orf4
TNNC2
RRP15
RGS20
PLEC
UBE2I
HNRNPH2
RHCE
TNC
PMEPA1
KANSL3
FER1L5
SLK
CSRNP1
SRGAP2C
KCNMA1
FAM72B
PTPN6
C12orf57
TMEM262
STX1A
UBAP1
SUMO2
NGDN
BANP
ALG6
THEMIS2
PARD6B
HM13
SULT2A1
FASN
SCAMP5
BSG
ADAMTS14
PPWD1
CENPK
KDM7A
OTUD7A
SSH1
OSBPL7
MRPL10
LRRC46
LRFN4
PLA2G4B
BUB1B
ETV4
VGLL4
USP30
XRCC5
VASH2
MRFAP1L1
BLOC1S4
CMIP
BIRC3
ADAM23
NGB
SCRN2
NAPB
PYURF
PIGY
EPS8
C19orf33
NEK6
ADARB1
GRAMD1C
PDCD6IP
RPTOR
RABGAP1L
HNRNPF
KYAT1
STX6
GPATCH3
SMARCA4
TMEM63A
TACC1
SRCIN1
H2BW2
BAIAP2
HMOX1
RAB3IP
ATG14
SLCO4A1
LARP1
ZNF514
ZNF2
FLYWCH1
TMEM248
TSN
PSMD1
LNX1
ADGRL1