ChIP-Atlas: Target genes

Potential target genes for SOX2

Query protein: SOX2
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5716451 | Neural progenitor cells
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
SOX2's Target genes

◢ SOX2: Average

◢ SRX130061: BJ

◢ SRX10407083: Esophageal squamous carcinoma cell line

◢ SRX10407084: Esophageal squamous carcinoma cell line

◢ SRX5286338: ES cells

◢ SRX5286339: ES cells

◢ SRX5286342: ES cells

◢ SRX5286343: ES cells

◢ SRX11904439: H29

◢ SRX11904440: H29

◢ SRX6852812: HCC2814

◢ SRX277137: HCC95

◢ SRX6852810: HCC95

◢ SRX3205373: Head and neck squamous cell carcinoma 

◢ SRX702105: hESC derived mesendodermal cells

◢ SRX702106: hESC derived mesendodermal cells

◢ SRX702108: hESC derived mesendodermal cells

◢ SRX1047416: hESC derived neural cells

◢ SRX11919277: hESC derived neuromesodermal cells

◢ SRX011616: hESC H1

◢ SRX1047413: hESC H9

◢ SRX277140: hESC H9

◢ SRX6101128: hESC H9

◢ SRX6101129: hESC H9

◢ SRX266860: hESC HUES64

◢ SRX266861: hESC HUES64

◢ SRX702107: hESC HUES64

◢ SRX702109: hESC HUES64

◢ SRX20532164: hESC HUES8

◢ SRX20532165: hESC HUES8

◢ SRX5286340: hESC WIBR2

◢ SRX5286341: hESC WIBR2

◢ SRX5286344: hESC WIBR2

◢ SRX10101684: hESC WIBR3

◢ SRX10101685: hESC WIBR3

◢ SRX8026053: hESC WIBR3

◢ SRX8026055: hESC WIBR3

◢ SRX968908: iPSC derived neural cells

◢ SRX968909: iPSC derived neural cells

◢ SRX968910: iPSC derived neural cells

◢ SRX968911: iPSC derived neural cells

◢ SRX968912: iPSC derived neural cells

◢ SRX1813586: iPS cells

◢ SRX1813587: iPS cells

◢ SRX20140858: iPS cells

◢ SRX20140859: iPS cells

◢ SRX512370: iPS cells

◢ SRX6852811: KNS-62

◢ SRX10035162: KYSE-140

◢ SRX10407085: KYSE-70

◢ SRX277131: KYSE-70

◢ SRX6852808: LK-2

◢ SRX6852813: LK-2

◢ SRX6852814: LK-2

◢ SRX026880: LN-229

◢ SRX359955: LoVo

◢ ERX2260038: Lung cancer

◢ ERX2260040: Lung cancer

◢ ERX2260044: Lung cancer

◢ ERX2260046: Lung cancer

◢ SRX2731713: Lung cancer cell line

◢ SRX6750797: MDA-MB-231

◢ SRX6750798: MDA-MB-231

◢ SRX1813580: MRC-5

◢ SRX1813581: MRC-5

◢ SRX1813582: MRC-5

◢ SRX1813583: MRC-5

◢ SRX1813584: MRC-5

◢ SRX1813585: MRC-5

◢ SRX2732210: MRC-5

◢ SRX2732211: MRC-5

◢ SRX5771664: N2102Ep

◢ SRX5771666: N2102Ep

◢ SRX5771668: N2102Ep

◢ SRX11904443: NCI-H1836

◢ SRX11904444: NCI-H1836

◢ SRX6852809: NCI-H520

◢ SRX11904441: NCI-H82

◢ SRX11904442: NCI-H82

◢ SRX10445285: Neural crest cells

◢ SRX10445293: Neural crest cells

◢ SRX10445303: Neural crest cells

◢ SRX10445312: Neural crest cells

◢ SRX20140860: Neural progenitor cells

◢ SRX20140861: Neural progenitor cells

◢ SRX20140862: Neural progenitor cells

◢ SRX20140890: Neural progenitor cells

◢ SRX20140891: Neural progenitor cells

◢ SRX20140892: Neural progenitor cells

◣ SRX5716451: Neural progenitor cells

◢ SRX5716452: Neural progenitor cells

◢ SRX5716453: Neural progenitor cells

◢ SRX330107: ReN-VM

◢ SRX330108: ReN-VM

◢ SRX277134: T.T

◢ SRX3367070: TE-5

◢ SOX2: STRING

GRK6
MTRNR2L2
MSH3
DHFR
MTRNR2L8
FOXO6
MTRNR2L1
G3BP1
GET3
DACT3
EMSY
CYTH2
RBBP6
SLC25A11
RNF167
ZNF576
IRGQ
PRND
KIFBP
CCT2
TMPRSS9
OSBPL1A
FAM102A
SLC25A25
NAIF1
HGS
ARL16
SPHK2
RPL18
ZBTB2
UNK
H3-3B
CLP1
SYAP1
ETV4
RFX4
DICER1
PLTP
ZSCAN18
HMGB1
SPATC1L
IREB2
CTNND2
CROCC
PIH1D1
ALDH16A1
PELI1
FAM227A
CBY1
WBP11
C12orf60
TESK2
PNKP
NGDN
NDRG4
REEP6
PCSK4
MEA1
TMX2
MED19
NRCAM
TBRG4
HEXIM2
CEP41
OSBPL2
CDK16
ETV1
MTF2
NF2
RAB36
RSPH14
BSDC1
PTMA
CHMP7
DHX9
PSMD3
CHN2
EPHB3
PPME1
C2CD3
MTRNR2L9
PFKM
HNRNPH1
YLPM1
RTN4
GPC4
HSPH1
H2AZ2
BTG1
SDCCAG8
CEP170
INTS9
HMBOX1
HNRNPL
TMUB2
NUP214
IPO11
PWWP2A
TPCN1
IQCD
TMBIM6
KIF5A
DCTN2
NRARP
MYLPF
TBC1D10B
DYNLL1
CCDC169-SOHLH2
CCDC169
SORT1
CACNA1S
SENP8
MYO9A
ZBTB45
TRIM28
EGR3
NRL
DCAF11
DIABLO
JOSD1
GTPBP1
CARM1
TOMM40
TAX1BP3
EMC6
AP3M2
TXLNG
TRDMT1
SUFU
ACTR1A
FZD9
EHD4
PIK3R3
CDK12
SPEM1
MAD2L1BP
GTPBP2
UFSP2
C4orf47
TMEM143
SYNGR4
ABHD2
RNF26
FAM120B
MRPL34
DDA1
LFNG
TMEM41B
TUT1
SHBG
FXR2
ELL
AGO1
RGPD1
RGPD2
PTH2R
ZNF672
FGD3
C19orf67
FGFBP3
CTTNBP2NL
SENP2
NWD1
SPAG4
SGCA
ACTR2
HNRNPC
GNAT2
AMPD2
HES5
PANK4
HACL1
BTD
ZNF286A
SAXO1
RRAGA
ETV5
ZCWPW1
MEPCE
DSE
TSPYL4
C1orf127
ARHGAP19
WDR81
DHX8
OGA
FAM181A
KMT5C
TENT5C
CNOT3
HDGFL2
MRPL45
ZNF775
RPL13
ZCCHC8
TPGS1
PPP1R16B
RFX1
NUBP1
RBM23
SELPLG
ZDHHC5
NKX2-2
KPNA2
SHC1
CKS1B
USP44
STAG3
GPC2
TCTN3
TEPSIN
NDUFAF8
PODNL1
DCAF15
PIN4
C8orf58
ZFC3H1
THAP2
ANKRD6
RFX2
ETFB
TOMM40L
APOA2
VEZT
FGD6
HES6
WBP1
INO80B
LSM10
ZSCAN20
ABCB4
TRIM2
MEX3D
RBM39
SLC25A44
PIF1
TEX50
CDC5L
RNF169
TUBB
MDC1
LRRN1
IFRD2
SPRY4
CHD6
MSANTD4
DMWD
SLX1B
SLX1A
BOLA2B
BOLA2
BOLA2-SMG1P6
GNA12
NEURL4
RPS13
MUC1
NOTCH1
PIK3C2A
POLDIP3
BMF
NOL4
CCDC61
ZSCAN2
CTBP2
PLEKHB1
TP53INP1
RAB5B
BAIAP2
PC
MPRIP
HYAL1
NAA80
HYAL3
RRP9
PARP3
MYCL
BANP
WDFY2
CRISPLD1
PSME2
EMC9
RNF31
PAIP2B
MICOS13
HSD11B1L
DDR1
DNM2
TBC1D31
LRRC23
SELENOF
HS2ST1
FBXO46
MEIOSIN
AQP5
ASPDH
JOSD2
KIAA0895L
GFRA1
EVI5L
KLF1
GCDH
C12orf71
EPRS1
UVRAG
WDR49
SLC33A1
LYSMD3
SMUG1
SESN2
RPS23
ATP6AP1L
TMEM256
NLGN2
XPC
LSM3
NUP62
IL4I1
ATF5
SP1
PPP2R1A
TCF4
DOHH
ZNF195
H3C15
H3C14
H2AC19
H2AC18
ZFYVE1
CDC25A
CLPB
KHDRBS1
COMT
TMEM91
B9D2
DUSP1
LRRC45
CENPX
MAMSTR
FGD4
ZNF358
ZNF548
ASMTL
NEMP1
DDX17
CCN2
TPST2
KBTBD6
H2BC8
H2AC8
VPS26C
ZBTB20
SEL1L
NDUFB5
MRPL47
SOCS3
MOSPD3
TAF13
CLIP1
PRCC
NDUFS8
MRPL24
HBP1
CPA4
RNF5
AGPAT1
GGPS1
ARID4B
CDH2
KDM2A
VPS37B
ERGIC2
WDR59
MAFG
UBE2S
KNTC1
RPL27
PDP1
BLOC1S4
HIF1AN
JAG1
TRAPPC3
RPUSD4
FAM118B
TICRR
NDUFA5
ELK1
HEXIM1
KHSRP
NSUN3
DHFR2
ZNF48
BABAM1
CELSR3
ILF3
SRRM1
HDAC9
IER5L
TAGLN3
TRIOBP
BRCA1
MPV17L2
FAM219A
DNAI1
TSNAXIP1
RANBP10
CRB2
SPAST
NAA40
TRMT1L
SWT1
ZNF823
EHBP1
SYMPK
FOXA3
SINHCAF
CD2BP2
FAM185A
ATF4
TOR2A
TRAF7
SRF
MARCHF9
CDK4
RAB5C
SLC35E2B
WBP1L
MUS81
CFL1
ALDH2
LUC7L2
FMC1-LUC7L2
FMC1
SF1
PYCR3
NASP
MMRN1
NNMT
TREX1
NFATC2IP
MEGF8
EPC2
KIFC1
ITGB1
VIM
GID4
ATPAF2
NCLN
NBEAL1
IQCG
RPL35A
ADAT1
MMACHC
SIX2
COPZ1
VEPH1
CCDC146
RAG2
IFTAP
PHF23
GABARAP
PIP4P1
SLC35B4
LPIN2
RBM15
ZSWIM4
DNM1L
KBTBD3
AASDHPPT
BBS7
RPS11
DGLUCY
SDCBP
IP6K2
CCNT1
GHITM
CIC
PCF11
RPS6KA5
NUMB
SMARCAL1
UBXN4
UBE4B
PHB2
H2AX
ZNF653
LIN52
ALDH6A1
RPL29
ARIH1
PCDH8
PRKRIP1
ING4
RLF
ZNF547
TRAPPC2B
ELP5
CTDNEP1
SPC24
BFSP1
CAMTA1
COX8A
IPO4
SPRING1
RNFT2
DNAH1
PITX3
GBF1
EXOSC5
BCKDHA
PRPF38A
ORC1
PPP1R35
SORBS2
SMARCAD1
CALR3
C19orf44
PPP1R15A
PLEKHA4
LMNA
VGF
E2F1
TMEM109
CNIH4
ABCG1
DTD2
PI4K2A
TUBA1A
KATNB1
GNB2
PKNOX1
IFRD1
ZMAT2
MID1
ZBTB38
PANK2
C1orf189
ERCC6L2
ZNF189
MRPL50
EMC3
CDK5RAP3
TSPYL1
POLRMT
PDXP
GADD45A
SCOC
GOLGA5
MTCH2
USP1
TCERG1
MEX3B
FOS
DAD1
ESYT1
INTS4
FLAD1
ADAR
TRAK2
STRADB
SIRT4
PHF12
MXD1
KRT23
PPP6R3
MTMR12
SAC3D1
UBQLN4
LAMTOR2
TLE3
JPT2
UBR2
TENT5B
GADD45B
MAP2
RND1
PTP4A1
EEF1AKNMT
STRADA
MAGI1
DISP3
CFAP20
CNN3
SMARCB1
ID4
SRP14
PUM3
BBS12
RAB8A
PRKAG2
LMAN2L
PRICKLE3
STAP2
MPND
PCNX3
MAP3K11
WDR87
SIPA1L3
ZNF513
LARS1
HIBADH
MAP2K7
UBE2F
CDC6
ZFP36L1
PDE4B
RRBP1
PAIP2
ORAI3
POLR3H
SIDT2
CLEC11A
ZSWIM1
FBXL19
ANK2
CDK5RAP2
VMP1
PTRH2
EIF3F
CX3CL1
WDR19
MECP2
SCHIP1
KANSL1L
KMT5A
PCBP2
TCIM
PKD2L1
SNRPD2
QPCTL
ARFGAP2
FBXL12
TTF2
FRAT1
FANCC
TNMD
OSBP
NUMA1
LRTOMT
PCM1
TULP2
NUCB1
DDX39A
PGM2L1
KIF3C
E4F1
PRPF19
ATG2A
RC3H2
DGUOK
NAA35
PMM1
PSENEN
LIN37
RPS26
ERCC1
ZFHX3
TRIM48
PTBP1
U2SURP
POLK
CERT1
MORF4L2
ZSWIM8
CHCHD1
PGM1
PSMC4
CEMP1
ALK
NEBL
NXPH2
TMEM114
PCYT1B
EFHC1
GPBP1
MTRNR2L10
MED25
FUZ
BAHCC1
PTTG1IP
SLC4A2
CDK5
SRPRA
DDX49
COPE
ZBTB5
HSPA1B
ANKRD54
EIF3L
WBP2
DGAT1
EFCAB6
PDK3
CUL3
TBC1D23
RUFY3
TSPAN19
LRRIQ1
TEX2
PGP
MGAM
UBL7
BUB3
PGAP2
CENPC
TSPAN17
BRICD5
ARMC12
RERE
HNRNPUL1
C10orf120
NR2F1
FRMPD2
ABCA5
DUSP7
RPS24
POLR3A
WIPI1
EFR3B
CCNG1
RACGAP1
CAMK2D
RALGAPA2
C16orf91
ACTN4
NES
SACS
LRRTM3
LRFN3
CHD2
ZBTB37
MRPL17
DBN1
ZNF138
TRAPPC6A
BLOC1S3
PPP4R3B
PPM1E
EGLN2
SASH1
BORCS6
RSF1
AAMDC
TMEM132B
ABAT
PKIG
FABP7
FOSB
GPR180
RNF10
ZNF417
COQ5
DUSP6
TCF7L2
EP300
ANKHD1-EIF4EBP3
ANKHD1
ZNF254
USP30
ERICH6B
EIF4A1
DAZAP1
GPR3
KBTBD7
KDM4B
RGS3
NARF
SDE2
MRPL2
KLC4
TM9SF4
YIF1A
TMEM151A
WDR74
ITGB8
FAM98A
NBPF1
KIF27
SCAF11
BRD3OS
ZSCAN9
EXOSC9
ANK3
LRP2
LYRM7
SSR4
IDH3G
IKZF1
NEK6
SLC39A9
ERH
AP3D1
FH
TMEM151B
NFKBIE
HP1BP3
EPB41
CCDC181
FAM187A
EFTUD2
CCDC103
PKD1
DPP3
MCM10
PPP1R21
GPAT4
L3MBTL2
DOT1L
XAB2
PCP2
ZNF593
C1orf232
SNX1
CIAO2A
METTL16
DNAJC12
TUBB4B
DHX16
NPAT
ATM
C9orf85
ABHD17B
ZNF862
CAPZA2
TTYH1
CHD8
ZSCAN31
SPTBN1
COL4A2-AS2
WDPCP
DNTTIP2
MDH1
UBALD1
TAB1
SNAPC3
DTNA
ESRRA
CATSPERZ
NEDD9
TMEFF1
ZNF140
VXN
ANKRD36
WASHC3
ABI2
CBX5
DMXL1
USF3
HNRNPA1
PARS2
ZBTB48
CXXC1
ADNP
ETFDH
C4orf46
ILF2
RBM22
STAU1
C2orf80
MAP3K13
ENSA
DDX27
ACTL6A
AKTIP
PSMC5
FTSJ3
SAP30BP
RECQL5
CTNNA1
LRRTM2
NATD1
ZNF738
CREM
PPP3R1
PGLS
UBE2C
EPHB1
STARD4
MFN2
KAZALD1
RPUSD1
CHTF18
LMCD1
FZD7
ALDH3B1
NME1
CDCA4
ZNF764
LYPLA1
NBAS
SUCLG1
ADGRB2
GPN3
FAM216A
P3H1
STX12
TMEM115
ID3
FZD2
TIAM1
LOC150051
AKAP9
ZNF416
PEX11G
LDB1
FEM1A
MRPS14
TPRKB
COG3
NDUFAF5
ESF1
UBA52
USP54
UPF3B
PDIA4
RMND1
ARMT1
CEP63
ANAPC13
SLC26A8
MAPK14
MAGT1
COX7B
TNRC6B
SPARC
CACUL1
SMPD2
PPIL6
FZR1
HNRNPR
HSD17B8
RING1
ATG5
RPL21
ALG8
RFWD3
RPL9
LIAS
PCBP3
EBNA1BP2
CFAP57
DPYSL5
CCDC130
UFD1
CDC45
NUDT2
INTS12
GSTCD
ANP32E
APOM
ZNF709
KIF24
BAG6
ZNF84
RFC2
ARL13B
TM2D2
ADAM9
ISY1-RAB43
ISY1
SLX4
FICD
SPSB2
EIF3D
UBL5
RNF40
CCDC189
DENR
SYNCRIP
PES1
ACYP2
PSME4
SALL2
MEGF9
TMEM258
FEN1
SARNP
ORMDL2
VTA1
NMBR
PMVK
FTSJ1
JAM2
CHMP5
BAG1
SPATA24
GTF2H2
POLR2E
RBX1
PLAGL1
ZNF304
SAPCD2
SNAP23
ARF4
GDF5
CEP250
ZNF106
TUBG1
RETREG3
YPEL1
ARHGAP4