ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX1078843 | HCT 116
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◣ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

PMF1-BGLAP
PMF1
TRIM48
MTRNR2L8
PGK1
MTRNR2L1
MAMDC2
MTRNR2L2
MSH3
DHFR
MTRNR2L9
RGPD1
RGPD2
DUX4
WDR74
UBE3B
KCTD10
KMT5B
COL23A1
TRIB1
CCDC200
KITLG
DDX23
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
MTF2
IFRD2
H3-3B
LAMP1
HEXIM2
CCNL1
RNF151
CTNNB1
CLTC
ZC3H6
FEM1A
TBL3
DSTYK
UNK
CDCA3
PDE6D
COPS7B
CALR3
C19orf44
EIF2D
STX18
TMEM41A
TIMM21
FBXO15
NCBP2AS2
NCBP2
ABCF2-H2BE1
ABCF2
MRPL21
IGHMBP2
BRWD1
FRG2C
DCP1A
ATAD2
TSNAXIP1
RANBP10
PPP5D1
CALM3
PPRC1
UBC
NOTCH2
CHPF2
GSPT1
PAFAH2
TMEM11
POLR2J3
SOD2
HMGB1
WDR53
FBXO45
TMEM199
POLDIP2
WTAP
TMEM222
SPATC1L
GATB
FOXJ3
CLPB
RBL1
CALM1
OPA1
SSNA1
ANAPC2
NDUFS7
SPNS1
TOMM22
CCDC88A
TSN
MRM3
GLOD4
SEC13
CYCS
ZSCAN22
MRTO4
EMC1
LRP6
SCGB1C2
SCGB1C1
AURKAIP1
ORMDL3
TCF3
CALM2
RPL8
COPS8
KBTBD7
TIMM22
UBB
CCDC77
NDUFS3
KBTBD4
NMNAT1
LZIC
NUP214
STX16
ZNF34
BTRC
KMT2D
SMN2
SMN1
CNOT1
PEMT
TMEM115
DOHH
CFAP410
SLC39A1
C16orf91
TRIP4
ZNF337
MED23
SCAF1
RRAS
POMZP3
SYMPK
FOXA3
CHMP4B
ST3GAL2
CTDP1
KPNB1
BOD1
AP2S1
MTERF4
RPS3
WASHC2C
TSSC4
PSMD3
PRCC
IST1
PEX3
ADAT2
PNKD
ZBTB45
RPS20
AHCYL2
AAMP
UBE2B
CDKL3
SNX17
EIF2B4
ING3
TOB2
TCEA2
CRTC2
PA2G4
GTF2H3
EIF2B1
CLEC16A
DEXI
ADPGK
HTRA2
DQX1
CKS2
GSTA4
PHIP
HEXA
ZNF212
WASHC2A
FRA10AC1
SMPD3
PEX26
NAGPA
THRAP3
KCTD9
CDCA2
NUF2
MRPL24
KBTBD6
RPL22
ZFAND2A
KDM5A
NUDCD1
TSC1
GFI1B
DDIT4
USP30
TTC13
ARV1
TRIAP1
PPP1R12B
MED15
ZNF721
PIGG
PARL
UBE2D3
MCM7
AP4M1
ZCCHC4
RPS6KB2
NXF1
RPS28
NDUFA7
ATG14
OSCAR
NDUFA3
ATP5MF-PTCD1
ATP5MF
ZKSCAN2
WDR97
MAF1
RPL18A
FAM207A
OAZ3
PKM
SCNM1
LYSMD1
USPL1
INVS
ERP44
IPO11
TMEM127
CIAO1
KCTD5
MAD2L1BP
MICOS13
HSD11B1L
H2BC21
H2AC21
H2AC20
SLC9A1
C8orf33
SCRIB
RPIA
PANK4
HES5
ZNF444
GTPBP2
NPRL2
CYB561D2
ZNF718
NOP14
GRK4
CDC25C
GPAM
PPP1R12C
DNAJC11
RPS26
WDPCP
MDH1
DUS2
DDX28
FUS
MAIP1
PHB
FARSA
CALR
DIP2A
TMTC3
CEP290
TRAPPC3
ZW10
TMEM79
SMG5
CYP51A1
TNFAIP1
IFT20
CCAR2
C8orf58
EIF4A2
SLC35B4
FAM53C
ZNF595
ZNF384
RANGAP1
ATXN2L
MAPKAPK5
BRIX1
UBR2
ALKBH3
MXD4
RBM42
C1orf159
SRSF11
ZC3H10
RPL41
ADNP
LRRC29
NUP153
ZNF56
UBQLN1
NME1
TBRG4
PGBD4
EMC7
MRPS15
PCID2
KAT7
CUL4A
RLF
BANP
PEX14
DFFA
PSMF1
PINX1
MFN2
INTS9
HMBOX1
C19orf53
PSMD11
CHD2
COMMD1
FBXW11
MRPS35
BOD1L1
WBP1
INO80B
DNAJA3
UBE2Q1
NKIRAS1
SLC25A19
DCAKD
UBQLN4
LAMTOR2
HMGCL
CCT4
KDM4B
GHITM
TOR1AIP2
TOR1AIP1
TAF5
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
ZFYVE1
NSFL1C
GID4
ATPAF2
CCDC146
MMACHC
SPRYD4
PBLD
HNRNPH3
TRIP12
FBXO36
LRRC40
TMEM70
ELOC
STK25
DPP9
RIC8B
LUC7L
AP2M1
VPS37A
CNOT7
NOC4L
DDX51
NMT1
TTC33
DOLPP1
ENDOV
RPL15
PHF23
GABARAP
CIC
SPTLC1
DCAF10
SP2
MRPL20
SLC33A1
ZNF420
ZGPAT
ARFRP1
PIGU
ZFYVE19
DNAJC17
ARHGEF12
AHCTF1
ACOX3
NTAN1
COMMD9
MDM4
FBF1
UCHL5
RO60
TEPSIN
NDUFAF8
MRPL58
CSRNP2
HNRNPAB
RCL1
IDH3B
TCF12
CANT1
EIF3F
RBM6
RPL29
BIRC5
DNAJB12
LETM1
STAU1
ABRAXAS2
GDE1
CCP110
PHF12
LONP1
CATSPERD
MTMR2
SECISBP2
SUFU
ACTR1A
TFPT
PRPF31
RALBP1
TRMT44
SUPV3L1
SMARCAL1
ARF4
HSP90AB1
GFUS
HSP90B1
SNAPC3
SART1
COQ9
CIAPIN1
ZSWIM8
CHCHD1
ZFPL1
CDCA5
UBL7
DDX49
COPE
HSPA5
GTF2I
PHF13
GTF3C5
DDX1
MRPS16
DNM1L
FDPS
JOSD2
ASPDH
RPL12
LRSAM1
PIK3R3
GTF2H4
CTU1
ARHGAP9
COG2
RCOR1
ZNF749
SNRNP70
RAB5C
H2BC5
H1-4
H2AX
TSC2
NTHL1
WASHC5
NSMCE2
SNX1
CIAO2A
TMEM262
DCAF8
TOP3B
MRPL39
BOLA1
GABPB1
DCAF1
DESI2
U2AF1L5
U2AF1
SSBP1
TRAF7
WAPL
MARS1
TMEM59
TCEANC2
RPS7
NDUFV1
CAND1
IP6K2
CBWD5
TNFRSF12A
THOC6
HCFC1R1
TRAK2
STRADB
CHCHD3
RWDD1
CRBN
SOX6
C11orf58
B3GALNT2
PNRC1
TLE3
FBXO46
CBWD3
METTL25
CCDC59
VCPIP1
C8orf44-SGK3
ODF3L2
TTC4
COX7C
SLC7A6OS
PRMT7
PSMD2
MCU
TEKT2
ADPRS
WDR87
SIPA1L3
TRMT61B
SF3A3
PTEN
KLLN
PIK3IP1
SKIV2L
NELFE
THYN1
ACAD8
ZNF500
SLC3A2
SLC24A1
PABPC1
BICD2
SRSF1
PRKACA
IPPK
SERBP1
USP48
GUSB
SRSF2
MFSD11
DPY19L4
RPS19
SMIM13
BRF2
SIRT2
NFKBIB
METTL9
POLG
PLEKHM3
SSR3
TARBP2
MAP3K12
FAM149B1
ECD
ZNF148
PSMD4
TIMM13
NDUFB5
MRPL47
FAM228B
CCDC90B
TMEM242
RPS16
MANF
SRRD
HPS4
RUVBL1
NOLC1
GFM1
COQ7
TRUB1
ATF4
MUS81
CFL1
TMEM217
TBC1D22B
SESN1
RPLP1
CMTR1
SPATA25
CTSA
VIRMA
UBA52
NLK
CAPN10
H3C13
H2BC18
ASXL1
TACO1
COA6
POLR2E
RFXANK
BORCS8-MEF2B
BORCS8
ZC3H3
KDM4A
PCBP2
MYLK4
CDKN2AIPNL
EIF4A1
CFAP20
HAGH
FAHD1
COPS7A
RPLP0
NDUFAB1
H3C15
H3C14
H2AC19
H2AC18
LARS1
TFRC
BMS1
NEURL2
CACTIN
SF3B2
GAL3ST3
BUB3
ZER1
REXO1
KAT8
SPRED1
WBP2
ATRIP
KPTN
EEF2
RCOR3
BUB1B
WNK1
PARK7
CLP1
TMEM230
XRRA1
SPCS2
SLX1B
SLX1A
BOLA2B
WRNIP1
PHB2
SRP68
GALR2
FAF1
B4GALT7
PPAN-P2RY11
PPAN
ANGPTL6
USP15
KMT2B
PDE4DIP
PTDSS2
CBWD6
FRG2
SLC4A2
CDK5
EMP3
BOLA2
WDR25
WARS1
RNASEH2C
PALB2
DCTN5
ZFYVE28
CWC25
GPANK1
CSNK2B
ZNF518A
HIF1AN
VCP
MRPS11
MRPL46
RANBP2
EEF1A1
ZNF225
GTF2H2C
GTF2H2C_2
TIGD6
HMGXB3
SNRPD3
GUCD1
C5orf51
H4C14
TEFM
XPOT
RPP30
ZFAT
RERE
SUMF1
MEIOSIN
OAZ1
NOL10
CHCHD6
SEC11C
ZNF189
MRPL50
UBN1
GLYR1
CEP350
CCDC150
EIF2S2
TATDN3
NSL1
POLR3D
PHAX
RTF2
RPL23A
RAB34
SEPTIN9
SPHK2
RPL18
FBXO28
RAD23A
CDK8
C12orf43
RPL3
CFAP99
FASTKD1
WDR4
NABP1
PTBP1
NDUFS2
ADAMTS4
SELENOH
FAM156A
SEC61A1
LRCH4
FBXO24
ZNF451
NCDN
KIAA0319L
SUGP1
MAU2
DGAT1
FAM156B
ZNF2
H4C11
VPS33A
PEPD
TMEM39A
SMIM12
TMEM69
GPBP1L1
CCDC124
RAB1A
ZNF527
PANK3
SDE2
HIRIP3
MRPL3
GET3
C19orf48
TOP2B
FAM83E
TOP3A
SMCR8
PPIA
SFSWAP
CNPY2
CLDND1
IPO7
PCNP
CNIH4
COMMD2
CAPN15
RTTN
RASEF
TTBK1
AP5Z1
ZNF805
STMN3
RTEL1
CCDC86
SNAP47
RPL6
MRPS23
JMJD4
UBAC1
AKIRIN2
ABT1
GPAA1
EXOSC4
TSFM
FANCD2
CNOT4
SPRYD3
CASC3
DDX46
ZNF133
CDK5RAP1
MRPL48
SRPRA
RPS3A
DYRK1B
TIMM50
ATP5PO
TOR1A
BOLA2-SMG1P6
ZNF335
RAD54L2
GATAD2A
USP42
USP35
KCTD21
PKN2
MAGOH
SEL1L
RBSN
SURF6
CTF1
BCL7C
L3MBTL2
EIF2B5
TBC1D22A
LRFN3
FAM133B
TMEM258
FEN1
SCAMP3
CCNC
CCNI
ZBTB4
SLC35G6
POLR2A
HBS1L
TUBGCP3
RPLP2
PIDD1
FAM89B
MRPL55
CLCN7
RPTOR
DUS3L
PSME3
HNRNPL
AARS2
INTS1
SERP1
EIF2A
SERPINI1
PDCD10
TAS1R1
NOL9
H4C12
ZNRD2
MTR
IARS1
SLMAP
PPP6C
PDCD4
FBXW2
DRG2
REXO4
CIAO3
ADAMTS13
MON2
TMEM160
DYNC1I2
EIF1
FAM187A
EIF5
MRPL44
PPIL4
RAB5IF
MRPL4
C12orf73
VIPAS39
AHSA1
TFEB
NUS1
C6orf89
MXI1
DNM2
EFTUD2
CCDC103
RANBP1
TMEM186
PMM2
ECSIT
ZBTB7B
APTX
UFSP2
C4orf47
TBCB
POLR2I
OVOL3
FAM227B
DTWD1
LTO1
ATG7
GARS1
AJUBA
C6orf47
VPS50
HEPACAM2
H4C15
PCM1
ZC3H11A
ZBED6
EIF3C
BDP1
ACTRT3
ACAD9
TVP23B
TBCCD1
DNAJB11
PSMD8
VPS4B
TMEM43
CHCHD4
EIF3CL
TUBGCP6
SRP9
ZNF554
ARHGEF7
EIF3D
MAEA
MIA3
AKAP8
WDR11
ATP6V1G2
NOP53
RPGRIP1L
FTO
DVL2
FBXO48
APLF
ZSWIM9
LIG1
SUPT4H1
POR
SH2B1
RFX1
SNRPD1
ERLIN2
WDR43
DHX33
NBPF1
NFKBIL1
STOML2
UMPS
ATP5MPL
FAM222A
ZNF567
RAD52
MRPL37
CYB5RL
NFYC
TPGS1
GTF2H2
RBM28
VAPA
ZNF419
MRPL11
PCP2
MYLIP
THOC1
ARFGAP2
FAM204A
LY6G5B
MAN2C1
ATP6V0B
CCND3
ARNTL
TXN2
FAM185A
MTMR9
SSU72
POLR3F
DZANK1
ZMYND10
TRIP10
GPR108
SESN3
TRMT2A
EXO5
ZSWIM7
TTC19
NCOA3
TSR1
SGSM2
LANCL2
HUS1
PMPCA
ENTR1
PRDX1
PPP1R8
PNPLA6
CHMP1B
TXNDC9
EIF5B
POLE3
C9orf43
FAM193A