ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5501657 | A-375
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◣ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

WDR74
GSTA4
H4C14
TMEM107
COL23A1
H4C15
GBA
NUF2
FRA10AC1
DSTYK
MTRNR2L1
MTRNR2L8
SF3A3
PHC2
MRPL21
IGHMBP2
RBBP5
STX16
INTS5
POLDIP3
EIF2D
PTPN6
C12orf57
SNAP47
JMJD4
SELENOH
NR1H3
ACP2
H2BC21
H2AC21
H2AC20
S100A2
FAM227B
DTWD1
SAR1B
INTS12
GSTCD
DRG2
SSBP1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
S100A16
TARS2
H4C8
NDUFC2-KCTD14
NDUFC2
HMGB1
USPL1
TATDN3
NSL1
SMG8
NDUFS3
KBTBD4
TRIP4
ZBTB45
NMNAT1
LZIC
DCP1A
MTRNR2L2
MSH3
DHFR
CCNL1
RPL37
RPS7
SLC44A1
RAD54L2
H4C11
GARS1
EIF1AD
BANF1
NPAS4
CCDC88A
YARS1
S100PBP
H1-3
NME1
TBC1D19
MRPS18C
HELQ
DPY19L4
ZNFX1
LRRC37A3
PSMF1
H3C15
H3C14
H2AC19
H2AC18
MRPS23
C17orf75
LMNA
SIRT4
DMAP1
LAMP1
H2BC5
H1-4
MTERF4
PCID2
CUL4A
STAT3
CCDC107
METTL9
RUVBL1
COL16A1
NOC4L
DDX51
H4C12
UQCC1
GTF2H2C_2
GTF2H2C
SEC13
MRPL40
HIRA
ERCC6L2
SCNM1
LYSMD1
AAR2
KLHL20
MGAT5B
ETV4
RPS6
JRK
H1-2
POLR3E
MTF2
H3C3
H2BC3
ARTN
STOML2
PRRG2
NOSIP
RGPD1
RGPD2
TAF1D
C11orf54
PDE4DIP
AURKAIP1
KMT2C
TUBGCP3
CT45A10
MPHOSPH10
MCEE
SRSF4
SMARCD2
CDKN2AIPNL
WDR24
PSMD9
HPD
ARL8B
PPIP5K2
TSFM
LRRC59
MAT2A
TEX9
TRIM48
RFX7
DDIT4
RASA3
NFE2L2
H2BC11
H2AC11
SYT7
STX18
DUS1L
CLUH
H3C13
H2BC18
FAM187A
VPS28
TVP23B
NUP54
C12orf65
WDR31
MUC3A
TTC4
PSMD6
MRPL1
ELAVL3
TBL3
KMT2E
ZNF296
GEMIN7
LSM12
G6PC3
DNAJC25-GNG10
DNAJC25
TTLL11
JUNB
BNIP1
TSC2
NTHL1
ADPRHL1
RPLP1
DDX19A
STAG1
MLEC
ZC3H10
RPL41
POLG
RANBP2
REXO4
ADAMTS13
DDX1
GTF2H2
LDAH
ALG10B
TMED2
LAMTOR5
RARA
NUP153
COMMD2
SRSF7
AQR
FAM98B
TEFM
SDHAF3
ATP5MC2
ADNP
SPRYD4
PMPCA
ENTR1
ISLR
MRPS31
NR1H2
H3-2
ST3GAL2
COMMD1
CCT4
CLCN7
SNRPE
MRPL34
DDA1
ABHD8
USP30
DCAF10
MORF4L1
DHRS3
RPS20
SCAND1
WBP1
INO80B
F2RL1
RPS19
GFM2
FZD1
PHLDA1
PPRC1
TEKT2
ADPRS
FAM133B
GTF3C3
GINS3
RPL27
ERCC1
NSUN4
BANP
SNRPB
KNL1
EMC3
MRPL20
RAB5IF
VIM
KCNMA1
SNRNP70
CZIB
RCAN1
ABCC3
ZNF749
TIMM22
RPL12
LRSAM1
TACO1
NFX1
ID1
PYROXD2
ATXN2L
RPL29
PHF12
MCOLN1
ZNF398
NOL11
ZNF425
MAPKBP1
MRPS2
C9orf116
ADAR
ITPKC
COQ8B
TEX46
KDM1A
VIRMA
TMEM101
PRPF4
CDC26
TTI2
CBX5
HNRNPA1
VPS72
ACYP2
H4C9
BRF2
TOR1A
WDR36
MAZ
BAX
C8orf37
S1PR2
TOB2
C8orf58
CCAR2
MRPL58
VPS36
CKAP2
RPL26L1
OMA1
DAB1
GPRC5A
ILF2
HEXIM2
PAFAH2
RPTOR
H3C2
H2AC4
H4C2
ZNF3
H4C1
H3C1
H1-1
KCTD5
UCHL5
RO60
C19orf67
RRP15
RPS15A
MAPK1IP1L
PSMC2
DNAJC2
TRMT61B
C12orf73
SFPQ
MRPS14
TRPM7
TMEM222
RPS3A
H4C3
H1-6
RIN1
SLC33A1
UBL7
PHB2
POLR2J
OTUD7B
EMC4
TOMM7
DNAJB4
FAM207A
C8orf33
DHX35
COX16
PLEKHB1
ZNF609
MRPS35
MTIF2
PPP4R2
RNF207
BMS1
MRPL55
YIPF2
TIMM29
ARL6IP1
EIF3G
BCL3
MYL5
ATP5ME
ZC3H6
ZER1
CIAO3
INO80C
MED18
FURIN
MED4
PNPT1
TMA16
ESCO1
HSPA6
METTL25
CCDC59
EFTUD2
CCDC103
PURB
SLC39A4
CPSF1
CCNT1
RBM39
CCDC15
FCHSD2
CLUAP1
C16orf90
SLX1B
SLX1A
BOLA2B
BOLA2
ILF3
TRIM41
ITGB3BP
EFCAB7
TBC1D13
CSKMT
C11orf98
CTNNB1
WDR97
MAF1
AARS2
LIG4
ABHD13
FKBP2
GATD3B
GATD3A
LOC114841035
PPP1R14B
BCAR1
IDH3B
FBXO28
PRDX1
CIAO2B
CES2
TMEM39B
GPN1
CCDC121
SLC9A1
DUS2
DDX28
FAM228B
UBA52
CDK5RAP1
SF3B6
CD2BP2
FAF2
DGKD
CAPS
NDUFS7
TRAF7
MIA3
TSNAX
ALDOA
TMEM238
RPL28
RASA1
MAP2K3
H3C10
H2BC14
H2AC14
EIF2B5
RPL5
H2BC4
H2AC6
SAAL1
TMEM250
SRGAP2B
SRGAP2C
CALM2
RPS3
C19orf53
SNRPD1
ZMPSTE24
TOR2A
HSD17B12
YWHAE
HROB
RPGR
H4C6
S100A10
BOD1L1
TAF5
COMMD9
MAN2C1
EFCAB2
UTP3
PPP1R11
SOS1
FAM200B
DRAP1
C11orf68
SNX17
EIF2B4
DCAF8
POLR3B
TPD52L2
ABHD16B
PARP6
ADAM22
ZC3HC1
TBPL1
ATAD2B
WDR70
PUM3
SNRPB2
MTOR
TRIB1
BIRC2
RAB11A
ARID1A
RRP9
PARP3
NANOS3
SEMA3B
SH3TC2
HEXA
NBPF1
CAAP1
TMEM259
SMG7
CNN2
FRMD4A
FXYD3
RPS16
CCDC200
RBSN
MTR
NFKB2
MRPL27
EME1
SF3B4
LRWD1
ALKBH4
YTHDF1
C11orf49
INPP4B
MBNL2
TCF12
WDTC1
YTHDF2
MACC1
ATF6
CRB1
SHMT1
POLR2J3
DOHH
PANK4
HES5
GTF2B
EPRS1
UBA2
H4C5
FOSL1
PCM1
SNX19
RPS27
RAB13
SNF8
NDUFA12
H3C12
H2BC17
H2AC17
NBPF15
BCAT2
TBL1X
HPCAL1
PSCA
OSCAR
NDUFA3
SART1
SPHK2
RPL18
FAM83E
AP1G1
DIAPH1
SACM1L
MBTPS2
C5orf15
ZBTB40
HEATR1
PARP2
USE1
TMEM183A
R3HDM2
INHBC
NACA
NAA20
MBLAC1
PLIN3
FARSA
CALR
DPP9
TTC33
CNPY2
NUP107
THEM4
EIF2B3
DHX8
SYCE2
FAM3C
PPP6R1
TAOK3
SUDS3
IQSEC3
CPT2
CDC25C
FAM53C
H2AX
SRCAP
LOC730183
NOP56
TTC17
ZNF286A
CDC73
NUCKS1
RBM45
PDE11A
RPS24
POLR3A
SLC20A1
INPP5F
BTRC
MRPL24
GALK2
COPS2
BUD13
PBRM1
GNL3
ASB6
TBC1D23
NDUFAF5
ESF1
LCMT2
ADAL
ACBD3
SRA1
H2BC15
H2AC15
SSH1
GOLGA1
STYXL1
MDH2
NUP133
PRKAR1B
MRPL30
MITD1
DGUOK
IREB2
MLLT11
CDC42SE1
CHD1
NCOA7
CALR3
C19orf44
ZCCHC4
RFXANK
BORCS8-MEF2B
BORCS8
COPS7A
RNASEH2C
TAS1R1
NOL9
RBM28
PCIF1
DNAJB1
SLC39A3
BLOC1S6
TSSK6
NDUFA13
SRFBP1
GPR180
PARD6A
ACD
TSN
TOR1AIP2
TOR1AIP1
ZCWPW2
AZI2
INTS4
ACBD5
STX4
MRPL42
ENO1
ZNF696
EXOC7
PDS5B
PSMD3
PARK7
ARHGAP19
EXOSC6
ARID3B
RPL26
QTRT1
NCOA5
DCLRE1B
AP4B1
WWTR1
DHRS13
FCRLA
PCARE
MAGOH
IQCH
AAGAB
USF1
AVPI1
ZSCAN30
OCIAD1
H4C4
TIMP3
H3-3B
SMN2
SMN1
UBE2D3
OAZ3
LRRC29
LARS2
ORC5
PSMA1
SECISBP2L
ETV3
B3GAT3
CISD2
TRIAP1
C8orf76
MZF1
CDK12
SETDB1
PYGB
H3C8
H2BC10
RPL6
WDR11
NOL7
PTPN11
IMPDH2
THOC5
BIN3
ETS1
AMOTL1
PKMYT1
KIF21B
IFRD2
DNAJC11
RAD52
HEXIM1
FBXO31
TAF12
TPK1
TAMM41
CEP135
AMACR
SQSTM1
YAE1
RPL22
ZNF721
PIGG
TBRG4
GTF3C5
MRPL44
FBXW2
RPS13
SLC30A6
BORCS7
RNF166
C1orf74
HSPA8
CTU2
ABHD10
IRF2BP2
ADGRG1
LY6E
GTF2H3
EIF2B1
RPS28
NDUFA7
MRPL38
COMMD4
SEC11A
MSL2
DUSP12
ACTN1
METRNL
OPA1
PHAX
HSPA9
SMIM10L1
PRH1-TAS2R14
PRH1
NCBP3
NUP42
MRPL33
ZC3H4
MTAP
H2BC13
H2AC13
LGALS1
NSFL1C
ODF3L2
SLC3A2
PTBP1
ING4
TTC1
PRMT5
TMEM79
SMG5
PINX1
MTMR2
CBWD5
CBWD3
KLHL12
PEX12
LTBR
E4F1
UTP25
TGFA
TMEM11
SSNA1
ANAPC2
MRM3
GLOD4
ARHGEF12
TMEM248
POLR2M
MUL1
STMP1
SLC35E2B
LONP2
ABCC11
GATAD1
ALDH1A3
MRPS15
RPL24
NOTCH2
PRCC
SRSF2
MFSD11
LRCH4
FBXO24
ZNF668
ZNF646
RMDN2
MAPK8IP3
KRR1
COX20
ATN1
PEMT
CWC25
RAD23A
SLC26A2
RPL35
ARPC5L
ZZEF1
CYB5D2
CHD1L
ZNF253
FUS
SRPRA
GPX1
VAMP1
SLTM
PRRC2C
PEX3
ADAT2
ABRAXAS2
MRPL48
POR
NFYC
POLR2C
TOMM40
GGCX
MVB12A
MANBAL
MKRN2OS
MKRN2
U2SURP
RFC2
DIDO1
LSM8
GID8
COA7
DCBLD2
EEF1A1
PPP1R8
AP5S1
AGAP3
TAGLN2
WFDC3
DNTTIP1
DPH7
SAP30
GPN2
TMBIM6
B9D1
BCL9
MEOX2
TIGD6
HMGXB3
DDX46
RDH5
RANBP6
NOC3L
RPL7A
MED22
RBM12
CPNE1
INKA2
DDX20
ISG20
S100A4
ROBO3
S100A3
CT45A7
CT45A6
CT45A3
TAF1B
DENR
RARS1
TRAPPC4
RPS25
NDUFA9
AKAP3
H2BC7
STK40
H3C4
H2AC7
MYEOV
NSMCE1
FBXL18
RPL17-C18orf32
RPL17
METAP2
M6PR
KLRG1
GAPDH
PSMB7
FLOT1
IER3
UTP23
CLNS1A
NEK4
INAVA
EML2
EPHA3
ERLIN2
POLR3F
DZANK1
RAD50
POMP
CANX
GABPB2
SPATA25
CTSA
NEURL2
TIMM50
PNPLA6
STAT1
RNASEH2A
PRDX2
MFAP3
FAM114A2
YKT6
ECI1
DTD2
SMARCA4
COIL
TSKS
AP2A1
SPAAR
HRCT1
TOMM22
SPNS1
MICOS13
HSD11B1L
C6orf89
EIF4A3
HDAC4
ZBTB37
EGR1
THOP1
SGTA
ZNF575
ALKBH3
UBE2Q1
SURF6
SRRM2
TECR
PPIL3
NIF3L1
BTG1
AXDND1
ANKRD18A
PRELID3B
ZSCAN22
SEPTIN9
SHPK
CTNS
FRG1
ZNF484
MRFAP1
METTL2A
USP19
WDR55
LEO1
GPATCH4
ALX1
PARL
SUMF1
DNM2