ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX14127544 | OCI-AML3
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◣ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

MAMDC2
H4C12
H4C14
H4C15
H4C11
H2BC21
H2AC21
H2AC20
EGR1
H3C13
H2BC18
H3C15
H3C14
H2AC19
H2AC18
FOS
H1-2
H2BC11
H2AC11
H2BC12
H2AC12
TSPOAP1
H2BC5
H1-4
H3C11
H1-5
H2AC16
EIF4A1
MCL1
H3C2
H2AC4
H4C2
DDX5
CEP95
CRIP1
H4C9
SRSF7
CKS2
FOSB
PTMA
H2BC4
H2AC6
H1-3
H4C8
H3C7
H2BC9
H4C7
H2BC8
H2AC8
TRA2B
ATF4
H3C12
H2BC17
H2AC17
ZBTB37
KLF7
DDX3X
MDM4
EEF1A1
ACTG1
H4C3
H1-6
PPARA
TUBA1B
TPI1
EIF5A
PPIA
H3C10
H2BC13
H2AC13
UBC
EIF1
ACTB
H3-3B
GAPDH
TMSB4X
CA2
H4C5
ZBTB4
SLC35G6
POLR2A
BBC3
DUX4
DDX21
NUCKS1
H2BC15
H2AC15
NPM1
CALM2
MAT2A
H4C6
SRSF2
MFSD11
FTL
PPP1R10
MRPS18B
UBAP2L
C1orf43
JUND
H4C1
H3C1
H1-1
SLC39A10
MTHFD2
SFPQ
WDR74
H4C13
FRG2C
FUS
H2BU1
H2AW
VIM
RCC1
HNRNPA2B1
CBX3
HNRNPU
GPX1
H4C4
RRP12
H2BC6
ZFP36
TAF1D
C11orf54
PLEKHG2
PABPC1
ZNFX1
HMGN2
JUNB
ZFP36L2
HNRNPA3
HSPA8
EFCAB2
EIF4A2
HNRNPH1
STX10
IER2
ANP32B
RPL23A
RAB34
HIPK3
EEF2
ANP32E
TUBA1C
SLC38A2
SLC3A2
COL23A1
H2BC7
H3C4
H2AC7
RFX1
CXCL8
POLDIP3
ADPGK
RPL8
ZNF34
TFRC
HNRNPF
SUB1
ANKRD13D
ENO1
SRSF3
SRSF6
N4BP2
RNF151
NDUFB10
RPS2
CIRBP
BCLAF1
PMAIP1
H2BS1
KMT2E
NFYC
MUC3A
GABPB1
NCL
RBM39
PPIF
RPSA
SRSF5
P4HB
CITED2
ZCWPW2
AZI2
RPL10
RPS20
RPS19
HNRNPAB
LTA
TNF
XBP1
CNBP
C19orf48
FRG2
PRDX1
EIF5
RPLP0
UCK2
YWHAZ
ODC1
TRIB1
H3-2
SNX16
BTG1
MBNL1
SF1
RPL13A
PCF11
NFE2L2
TRAF7
PCBP2
ETF1
RMI1
HNRNPK
TANK
UBE2S
HNRNPD
PFN1
ENO3
TAGLN2
EIF4G1
ACTRT3
SNX5
MGME1
CXCL1
RPL12
LRSAM1
RPL21
TASL
GSTA4
PDCD4
LDHA
NDUFAF3
DALRD3
TMBIM4
PSEN1
RPS23
ATP6AP1L
MUS81
CFL1
PNP
KLF6
GTF2A1
APTX
DNAJA1
YBX1
SLC16A3
PPP1R15A
PLEKHA4
KLF9
IRF2BP2
NKIRAS1
RPL15
CBX5
HNRNPA1
KPNA2
CLK1
ATAD2
RPS16
ZFAT
PABPC4
LUC7L2
SETD7
PTPN6
C12orf57
GLUL
TMEM267
JPT1
SIRT4
PCIF1
RPS8
MATR3
THBS3
MTX1
KLF2
ZNF217
YWHAG
PBLD
HNRNPH3
COQ2
WDR43
SLC7A1
CORO7-PAM16
CORO7
INO80
CEBPA
THBD
PCBP1
FASN
TPT1
CCT5
ATPSCKMT
TLK2
HSP90AB1
E2F3
GOLM2
RPL10A
ZWILCH
RPL4
CTBS
H2BC14
H2AC14
ARF4
LRRC37A3
LDLR
H4-16
H2AJ
EGR3
HDGF
RHEB
C6orf62
RPL22L1
HSPA4
NFKBIZ
DENND4B
REPIN1
TYMP
SCO2
ODF3B
RPL13
AZIN1
UNKL
CYB561
HSH2D
EIF4A3
RPS13
BTF3
SLC7A5
DARS1
GTF2I
FRAT1
MARCHF6
FAM43A
HSP90AA1
XPOT
CITED4
ZC3H4
CCNL1
SRCAP
LOC730183
TMPO
HMGB2
ZC3H6
RPL31
RPL27A
GPN3
FAM216A
S100A13
CHTOP
LSM8
SRGN
RPL37
RPS12
IVNS1ABP
MFSD3
GPT
ZBTB25
ZBTB1
NOP58
NME2
RFX3
MPC2
DCAF6
PTBP1
CSKMT
C11orf98
UBE2M
CHMP2A
CCNI
RPLP2
PIDD1
RPL17-C18orf32
RPL17
C18orf32
GDI2
YWHAE
CCDC78
HAGHL
AZU1
RPL3
GPCPD1
TMEM187
HCFC1
DUSP2
H2AX
PHB2
ALDOA
ST7L
CAPZA1
ENOSF1
ZNF487
FABP5
RAI1
ASXL1
PAN3
HNRNPDL
ENOPH1
BHLHE40
DLX1
RPL32
SMARCC1
TARS1
UBE2D3
SPAG7
ETV6
USP22
PRKAA1
PRCC
ING3
CDC25C
FAM53C
HERPUD1
APOLD1
SPRED2
YDJC
CCDC116
SRSF1
PTP4A1
ACTR2
IFRD1
RPS15A
H2AZ1
DNAJB14
RAB11FIP1
MORF4L1
CCT2
CDC42
ARHGDIA
RNH1
RPS6
PKM
HSP90B1
NDRG1
S100A11
CTCF
OPA1
MCM6
MBP
ZNF804A
ISOC2
LONRF1
ZC3H10
RPL41
TOB1
RPS27
RAB13
CD164
ZFAND5
TIGD5
EEF1D
RCC2
JUN
LYN
MID1IP1
SESN2
TTC30B
NUFIP2
ACTR3
RBM3
NXF1
HNRNPL
ID1
MDM2
TXNRD1
MYLIP
GTF2IRD2
GTF2IRD2B
SARAF
NDUFS1
EEF1B2
KNTC1
JADE1
RPL29
SDE2
KDM6B
CREBZF
B2M
ELK4
GTF3C6
SLC22A4
DHRS9
ERLIN2
GTPBP4
PUF60
DDX59
ZNF787
TSC22D3
ERCC1
FOXP1
LYST
RELT
NFKB1
OGFRL1
IL6R
ATP2A2
TRPM2
TOB2
RPLP1
STYXL1
MDH2
ATAD2B
SCAF8
EBAG9
ZNF207
BCOR
ZNF335
RPL7A
MED22
TMEM238
RPL28
SYNCRIP
PAIP1
TNFSF9
HSPE1-MOB4
HSPE1
HSPD1
ID2
USF1
SMARCE1
ZNF131
CHD1
ZNF124
SNRPB
EZH2
EP300
MKNK2
BACH1
LRP8
STAG1
NASP
BPTF
ARHGAP39
ST3GAL1
MEF2D
ETS2
STAG2
PNN
TRAPPC6B
SINHCAF
TMEM70
ELOC
EIF4G2
FTH1
IL17RA
DUSP1
PPDPF
KEAP1
RPL24
TMX4
MCM7
AP4M1
SNRPD1
ILF3
TMEM107
HIPK1
BAZ2B
ANKRD18B
LRG1
TIMP3
PPRC1
FMC1-LUC7L2
FMC1
TRIM27
RECQL4
LRRC14
LRRC24
WDR49
RBM14-RBM4
RBM14
SETD5
DDX19B
AARS1
DOT1L
GGNBP2
INTS6
OSBPL1A
CXCR4
KATNAL2
PIAS2
SNTB1
HSPA5
RBMX
PPP2R2A
UNK
RPS3
LONP1
CATSPERD
PPP1R15B
CAPZA2
ARIH1
ATP6V0C
TBC1D5
PRMT1
PPP1R27
MCRIP1
NPEPL1
YTHDF3
CFLAR
RGL2
RAN
MAPK1IP1L
SLTM
DHX9
SLC25A33
TAF4
HMGB1
DDIT4
IPO7
GOLPH3
ITGA4
POLR2J3
RPS26
CAP1
ING5
RNF138
DNAAF2
CEBPB
CYCS
EIF3A
XPO6
FOSL1
MICOS10-NBL1
MICOS10
INO80D
ANXA2R
RARA
CENPA
HMGA1
KIF27
IRF2BPL
RPL6
GADD45B
PABPN1
FIBP
CCDC85B
SLC25A13
FBXL17
TBL1XR1
MRPL3
ADIPOR2
RHBDD3
EWSR1
CDK12
RRM2
ATG16L2
PHF19
EIF3E
STMN1
EIF4E
CSDE1
RAB26
CTNNB1
KANSL1
SRSF4
DHX15
LIG3
ZNF766
CDV3
MIDEAS
ATP2B1
TXN
GMEB1
GPAA1
EXOSC4
NACA
NSMAF
LAT
RPL18A
WDR6
ERAP1
GRPEL1
ZAR1L
BRCA2
HNRNPC
MICAL1
CCL5
BANP
RNF169
CTPS1
BZW1
NIPBL
WDR1
BAZ1A
HSF1
BOP1
RPL5
COX20
MAN1B1
SETD1B
CEP350
CCDC200
AKAP8
TCERG1
TIGD1
EIF4E2
DDX17
SRF
NOP56
H1-10
DYRK1A
RBM12B
ARHGAP26
INSIG1
PAK2
DBI
C2orf76
RPS27A
CLHC1
SMIM19
SLC20A2
UHRF2
C9orf40
STRN3
AP4S1
SPRY2
UBB
VCP
WDR4
EIF4B
PRDM10
DNAJB4
RNASEH2B
MED31
C17orf100
E2F5
FUBP1
CPQ
ADGRE5
EDEM1
NUP153
DUS3L
SSU72
RAB7A
RPL35
ARPC5L
ZNF24
PIGW
MYO19
YBX3
ANP32A
ELANE
ZEB2
CALM1
GABPA
ATP5PF
NNT
NFIL3
RPL37A
ZFX
ZMYND11
WDR25
WARS1
LIN9
GRB2
ARIH2
SREBF1
C16orf54
SPI1
OAZ1
NOCT
NRF1
FAM83D
ZYX
FAM131B
LAPTM5
HNRNPUL1
KDM3B
NAP1L1
FAIM
SIK3
TUBB
HSPA9
TEDC1
MDC1
NUDT4B
NUDT4
TCTA
RHOA
ZNF532
SERBP1
RBM12
CPNE1
RPS9
VMP1
PTRH2
RUNX1
ZNF22
GNB1
PLAC8
RAD23B
RPL7
RDH10
NABP1
SEC63
SBNO1
TRA2A
LRIF1
IQGAP1
PPP3R1
NUDT19
PHF10
SRRM2
ANKMY1
DUSP28
HNRNPR
AHRR
TFAP4
ARHGAP4
SLC22A15
GBE1
PCBD2
CFD
SUSD1
ZBTB2
KMT5B
NBN
COQ8A
SLC25A32
DCAF13
CSNK1D
HK2
ATP6V1G2
DYNLL1
ELF2
C5orf24
SRSF9
DDX39B
SSBP4
LMNA
TFAM
TNFRSF10B
FLT3
ARPC3
RACK1
CCDC57
ZBTB11
TADA3
ARPC4-TTLL3
ARPC4
MED17
RNF135
VEGFA
ZCWPW1
MEPCE
SERPINB8
SFMBT2
ARSD
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
DDX23
MTF2
IFRD2
HEXIM2
LAMP1
CLTC
FEM1A
TBL3
DSTYK
PDE6D
COPS7B
CDCA3
EIF2D
CALR3
C19orf44
TMEM41A
STX18
BRWD1
TIMM21
FBXO15
NCBP2AS2
NCBP2
MRPL21
IGHMBP2
ABCF2-H2BE1
ABCF2
DCP1A
NOTCH2
PPP5D1
CALM3
TSNAXIP1
RANBP10
CHPF2
PAFAH2
GSPT1
TMEM11
SOD2
WTAP
TMEM199
POLDIP2
WDR53
FBXO45
TMEM222
SPATC1L
GATB
FOXJ3
CLPB
SSNA1
ANAPC2
RBL1
CCDC88A
TSN
NDUFS7
TOMM22
SPNS1
SEC13
MRM3
LRP6
GLOD4
AURKAIP1
ZSCAN22
MRTO4
EMC1
SCGB1C2
SCGB1C1
ORMDL3
TCF3
COPS8
KBTBD7
NDUFS3
KBTBD4
NMNAT1
LZIC
TIMM22
CCDC77
STX16
NUP214
KMT2D
SMN2
SMN1
BTRC
CNOT1
PEMT
TMEM115
MED23
DOHH
CFAP410
TRIP4
SLC39A1
C16orf91
POMZP3
ZNF337
SCAF1
RRAS
KPNB1
SYMPK
FOXA3
CHMP4B
ST3GAL2
CTDP1
MTERF4
BOD1
AP2S1
IST1
WASHC2C
TSSC4
PSMD3
PEX3
ADAT2
ZBTB45
PNKD
UBE2B
CDKL3
AHCYL2
AAMP
SNX17
EIF2B4
PHIP
TSC1
GFI1B
TCEA2
CRTC2
HTRA2
DQX1
PA2G4
GTF2H3
EIF2B1
CLEC16A
DEXI
FRA10AC1
HEXA
ZNF212
WASHC2A
SMPD3
PEX26
NUF2
NAGPA
THRAP3
KCTD9
CDCA2
USP30
MRPL24
KBTBD6
RPL22
ZFAND2A
KDM5A
NUDCD1
TTC13
ARV1
TRIAP1
ZCCHC4