ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX20230568 | Ishikawa
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◣ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

MTF2
CTNNB1
CLTC
PPP5D1
CALM3
NAGPA
CCDC88A
STX18
BRWD1
TSC1
GFI1B
SOD2
WTAP
ZKSCAN2
MRPL21
IGHMBP2
MRM3
GLOD4
LRP6
SCGB1C2
SCGB1C1
ATAD2
KCTD9
CDCA2
KMT5B
CCNL1
CKS2
WASHC2A
HEXA
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
WASHC2C
MAPKAPK5
IPO11
LAMP1
KMT2D
KPNB1
TRIP4
CALM1
TRIAP1
SPNS1
NMNAT1
LZIC
POLR2J3
PDE6D
COPS7B
ATG14
ZC3H6
SUPV3L1
PHIP
ALKBH3
RASEF
TET3
WASHC5
NSMCE2
CALM2
NOTCH2
TMEM199
POLDIP2
HEXIM2
STX16
EIF2D
FOXJ3
DDX23
PKM
VPS33A
TMEM242
TMEM41A
UBE2B
CDKL3
UBE2D3
IDH3B
GPAM
TOMM22
RDH5
ITGA7
BLOC1S1
CYP51A1
GATB
GTF3C5
TIMM22
NUP214
DUS2
DDX28
WDR53
FBXO45
PEX3
ADAT2
ADNP
NCBP2AS2
NCBP2
IST1
DNAJC11
SPATA25
CTSA
NEURL2
NDUFS3
KBTBD4
POLR3F
DZANK1
TCF3
SLC9A1
MTERF4
MRPS35
HMGCL
NXF1
UBQLN1
SPTLC1
RCL1
ZFAND2A
SLC44A2
MRTO4
EMC1
TRIP12
FBXO36
OGT
RBM42
POMZP3
VIRMA
DIP2A
ARHGEF12
HOXD8
TSN
FAF1
AJUBA
MTMR2
CCNG2
TOB2
CYCS
GTF2H3
EIF2B1
RCOR1
SAP30BP
RECQL5
SSNA1
ANAPC2
MCM7
AP4M1
MED23
DDIT4
KDM4A
HAGH
FAHD1
ZNF518A
CCDC77
KDM5A
ATXN2L
TSFM
OPA1
SPRED1
GABPB1
PINX1
VCP
PBLD
HNRNPH3
MEF2A
CFAP20
PEPD
C8orf33
TMEM222
TRMT61B
TSR1
SGSM2
IP6K2
SFSWAP
RNF151
TBL3
METTL25
CCDC59
HMGB1
USPL1
MFN2
SEC13
MRPL39
MCU
USP30
ERAL1
TMEM39A
TAS1R1
NOL9
COPS8
SLC7A6OS
PRMT7
ABCF2-H2BE1
ABCF2
CHPF2
OAZ3
ACOX3
TRMT44
SMN2
SMN1
MAGOH
ZNF212
PNRC1
GRHL2
SRSF11
LRRC40
PTEN
KLLN
PHAX
RPS28
NDUFA7
MAIP1
ADPGK
DCP1A
ATF4
UBC
NOC4L
DDX51
TBRG4
PIK3R3
NUF2
SRSF1
TAF5
ENDOV
VPS37A
CNOT7
RFXANK
BORCS8-MEF2B
BORCS8
RPP30
ZFPL1
CDCA5
TMEM262
TIMM21
FBXO15
PDCD4
BRF2
PCID2
CUL4A
TCF12
C12orf73
SNRPC
SUMF1
ZNF721
PIGG
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
PIK3IP1
NOL10
TOP3B
DSTYK
NSFL1C
SPRYD4
PSMD3
COMMD9
ZSWIM8
CHCHD1
RPL22
MAGOHB
COMMD1
CCT4
SNRNP70
DOHH
CCNI
GTF3C3
NDUFS7
TSR2
UBE3B
KCTD10
MRPS15
FANCD2
TOP2B
NDUFC2-KCTD14
NDUFC2
DYRK1B
RBL1
ZFAT
CFAP410
DNAJA3
EIF4A2
PALB2
DCTN5
KCTD5
TRMO
MED4
FAM89B
ZNRD2
BRIX1
ATRIP
MIS18A
HBS1L
COQ7
DOLPP1
C5orf51
HIF1AN
ATP5MF-PTCD1
ATP5MF
ATG7
DNAJB12
THOC1
SNRPD3
GUCD1
MARCHF8
CMTR1
MAML3
CASC3
CRBN
RERE
ZSCAN22
CWC25
MRPS11
MRPL46
HSP90AB1
FUS
PTPN6
C12orf57
PSME3
COMMD4
RPUSD4
FAM118B
PAFAH2
CHD2
CCDC86
METTL1
EEF1AKMT3
CYP27B1
ARFGAP2
ZNF383
CLCN7
CBWD5
CBWD3
ITGB3BP
EFCAB7
FAM149B1
ECD
PLEKHM3
PPWD1
CENPK
ZCCHC4
IL4I1
NUP62
ATF5
TEFM
TOP3A
SMCR8
PFKM
SENP1
MRPL58
SESN3
RANBP6
FRA10AC1
ATP8B1
MRPL4
MPHOSPH10
MCEE
NUP160
ATG9B
ABCB8
NECTIN4
ZC3H3
SRP68
GALR2
THUMPD1
TACO1
SLC3A2
DNTTIP2
U2SURP
EDC3
PRTG
ABT1
ANKFY1
MRPL55
PARL
MOB3A
IZUMO4
TFIP11
VAC14
C6orf132
SECISBP2
NDUFAB1
SDHB
BRAP
ACAD10
PDCD6IP
PRKACA
UMPS
MXD4
STYXL1
MDH2
DDX46
NDUFB5
MRPL47
SPATC1L
TATDN3
NSL1
C2orf49
HNRNPAB
CHMP1B
MYLIP
CNOT1
ULK2
TPRN
TMEM203
NDOR1
DCAF8
CCNC
FAM187A
EFTUD2
CCDC103
BRMS1
B4GAT1
GPATCH3
TARBP2
MAP3K12
DDX41
GSTA4
GHITM
SLC35B1
NUP54
PARPBP
NUP37
CLN8
FAM207A
C12orf43
GSTO2
LMTK2
SH3GL2
OXNAD1
DPH3
MRPL44
HPS5
GTF2H1
NOL11
SLC24A1
SENP2
RARS2
ORC3
PPP4R3B
KAT8
HOXD9
COA6
WDR4
FAM76B
CEP57
NDUFV1
USP42
AP5Z1
MRPL48
IARS1
JMJD1C
FAM204A
PEX14
DFFA
YPEL2
VCPKMT
CDCA3
SMPD4
MZT2B
ABI1
CYTH1
DDX19A
LRRC29
BMS1
ARHGAP40
WDR25
WARS1
FAM156A
FAM156B
CCNH
PELP1
PHF5A
ACO2
FAM98B
SLC25A53
ARNTL
PPT1
TXN2
BRPF1
STOML2
TMEM79
SMG5
NCAPD2
MRPL51
FAM133B
TSR3
GNPTG
CCDC43
OR6B2
NDUFA10
RPS26
ASH2L
RPLP1
C19orf48
DPP9
EXOSC8
ALG5
COMMD2
PCP2
XAB2
PPIL4
MED9
DHX40
SF3A3
RANBP2
PRDX1
RWDD1
RLF
ZNF540
ZNF571
FBXL12
GOSR1
ACAD9
PSMB2
AP1G1
TJAP1
EXOSC3
TMEM184A
TTC4
AARS2
TBCCD1
DNAJB11
EIF4A3
LMAN2
ABRAXAS2
SARAF
VPS11
DCAF10
XPO4
AAR2
TOMM6
CLDN9
MRPL37
CYB5RL
CBWD6
METTL9
ELF2
SEC62
U2AF1L5
U2AF1
ACSL3
YIPF6
LRRC57
HAUS2
TIGD6
HMGXB3
RTF2
RNF121
LOC100133315
ATXN2
C16orf91
PI4K2A
ARRDC4
VAMP1
TIMM17A
TROAP
PISD
RPS6KB2
MRPL12
SRRD
HPS4
AARSD1
XRRA1
SPCS2
MCAT
SPTY2D1
RCOR3
SART1
FAM227B
DTWD1
UBB
TRIP11
NUS1
RTTN
KDM5C
OSCAR
NDUFA3
UBN1
GLYR1
TBC1D22A
ZSWIM7
TTC19
PMPCA
ENTR1
TAOK2
UHMK1
MANF
ZW10
LRRC46
TCP1
MRPL18
ZC3H10
RPL41
DDX5
CEP95
UBIAD1
WDR11
C1D
MCCC1
CDKN2AIPNL
MOB4
CACTIN
TMEM217
TBC1D22B
H3-3B
UNK
RAD51AP1
C12orf4
CDS1
FEM1A
COQ10A
MARCHF9
CDK4
SLIRP
ALKBH1
POC1B-GALNT4
POC1B
GALNT4
TUBGCP6
PPP1R8
SLC25A26
CRYBG2
DCP1B
POLR2J
SMIM13
MRPS16
SKA3
MRPL57
TFRC
SNAPC5
KAT5
TIMM23B
PARG
SRSF7
GOLGA3
ZNF614
RPLP2
PIDD1
EXO5
BORCS7
LDAH
COQ9
CIAPIN1
G3BP1
LAS1L
NDUFB6
MRPS23
TBCB
POLR2I
OVOL3
TSPYL2
FBXO28
PNPT1
COL12A1
ALDH3A1
TIMM50
RPL6
LTO1
PTPN11
CNP
BSDC1
C17orf75
MRPS7
GGA3
ALG1
CCDC97
TAGLN2
RAD54L2
GGCX
JPT1
SNRNP200
UQCRC1
PTCD3
POLR1A
ATP6V1G1
CDK5RAP1
RTN4RL1
DPH1
WDR61
MRPL27
EME1
RBBP8NL
LSP1
PA2G4
PSMF1
REXO4
ADAMTS13
NBPF1
RPS16
S100A2
RPTOR
CANT1
JRK
NME1
CAAP1
MDP1
CHMP4A
NUP42
EIF3F
GTPBP10
MON2
NAT10
TENT5C
ZSCAN30
VDAC2
MAGEA2B
MAGEA2
BOD1L1
TOB1
DIABLO
RRM1
DPY19L4
NOL7
MAGEA6
C8orf58
CCAR2
TNKS
BAGE5
BAGE4
BAGE3
BAGE
NLK
ID2
PLK2
GNB2
TMEM128
NOLC1
PSMD7
SMIM12
MTIF2
GPATCH1
MMUT
CENPQ
HDAC6
SAR1B
PRPF40A
ARL6IP6
ZGPAT
ARFRP1
TMEM258
FEN1
COG2
PNRC2
ZNF800
KRT80
SON
GART
FREM2
PKN2
RBM28
ZSWIM6
NUP155
ABHD11
FBXW2
AURKAIP1
THRAP3
DDX1
ZC3H15
DNAJC19
ZNF326
RMDN3
PGBD4
EMC7
ZNF839
LSM5
AVL9
GOT1
LONP1
CATSPERD
DCAF1
DCAKD
NMT1
NABP1
SMAGP
SETD3
CCNK
TMEM238
RPL28
KDM4D
CWC15
MRPS31
H2AX
NUDT15
CDC25C
FAM53C
METTL2B
USP8
TEPSIN
NDUFAF8
RAD18
AMOTL2
SCFD1
PET117
KAT14
REXO1
LANCL2
GARS1
LTBR
GTF2I
TBC1D19
UBE2D2
ARF4
KLHL12
PSMD6
ARL8B
ARMC8
NOP9
DHRS1
TMEM11
ZNF148
PSTK
ATP5F1B
CRCP
TIMM23
MRPL53
CENPBD1
RUVBL1
EEFSEC
SF3B3
COG4
GFM1
UBXN1
RASGEF1B
ZNF335
DRG2
POLR1F
POLE3
C9orf43
MRPS17
RAD23A
CHERP
STMN3
RTEL1
NME6
RBSN
CLTCL1
PEX26
KLF5
AASDH
PCBP2
SSU72
FBF1
TMEM230
TMEM248
CHSY1
CSRNP2
LDHA
TUFT1
INTS13
FGFR1OP2
TMEM254
BBS1
PSMD12
NUP93
FAM161B
COQ6
C6orf226
MAP3K7CL
CCT8
SRPRA
EIF1
ZFAND5
ZBTB45
TMED2
CCT2
NUP133
CBWD1
VMAC
NDUFA11
DNAJC9
UBN2
TSG101
TMEM126A
WDHD1
SOCS4
RNF6
CCDC130
IFRD2
MDM4
TRUB1
SKIV2L
NELFE
ISY1-RAB43
ISY1
RPS3
MVD
GXYLT1
GET3
AVPI1
TAF3
ATP6V0D1
AGRP
CBLL1
METAP2
VCL
RPL3
ECSIT
PSPH
CCT6A
MDN1
TYK2
MTHFD2
WDR43
GCN1
FAM122A
ATR
APTX
DNAJA1
SMG8
SP2
MRPS30
SLC25A51
GADD45G
WDR70
CLPX
SLC35A3
COX10
GMFB
C18orf21
USP15
HTRA2
DQX1
SDE2
VPS53
FPGS
GID4
ATPAF2
CENPS-CORT
CENPS
TAF2
SLC30A6
RBM48
PEX1
NBEAL2
CCDC12
SLC38A2
RNASEH1
MALL
GOSR2
UBE2G2
KDM3B
PPP1CC
PSD
FBXL15
METAP1D
ZC3H18
BUD13
GINS1
TM2D1
MRPL11
TEKT2
ADPRS
PPAN-P2RY11
PPAN
ANGPTL6
GATAD2A
LRRC37A3
RPL5
POLR2C
H2BC21
H2AC21
H2AC20
MKS1
ZNF770
TIGAR
DDX56
DDX52
SNAPC3
RPS23
ATP6AP1L
SULT2B1
SNX1
CIAO2A
HAUS5
NECAP1
NDUFA2
IK
MRPS22
SURF6
HNRNPL
ATP5MPL
NDUFA12
EPHB3
QRICH1
RARS1
WDR74
NEK2
RBM19
RPL8
ZNF34
SPRYD3
RFX5
XPNPEP3
ST13
DNAJB7
RRP7A
NAGK
TJP2
CALR3
C19orf44
MRPL16
MYSM1
ATP5IF1
TIMM44
ERCC5
DENR
YEATS4
TRMT1