ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX20230573 | Ishikawa
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◣ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

MTF2
CTNNB1
PPP5D1
CALM3
CCDC88A
RCL1
CLTC
MCU
SLC44A2
FOXJ3
LAMP1
MRM3
GLOD4
IP6K2
TMEM41A
MRPL21
IGHMBP2
SCGB1C2
SCGB1C1
CYCS
CKS2
ATAD2
SOD2
WTAP
ZC3H6
ATP8B1
KDM4A
RASEF
HEXA
CCNL1
PIK3IP1
PHIP
DIP2A
ATG14
STX18
PNRC1
FAF1
WASHC2C
DDX23
GRHL1
CALM1
HEXIM2
SEC13
UBE2D3
ZFAND2A
SLC9A1
HMGCL
SPNS1
NXF1
IST1
BRWD1
DOLPP1
NAGPA
NOTCH2NLC
NOTCH2
KCTD9
CDCA2
LRP6
MAPKAPK5
POMZP3
EIF2D
TET3
TRIP4
NUP214
CHD2
NOTCH2NLB
NOTCH2NLA
CALM2
KPNB1
GPAM
TRIAP1
POLR2J3
NCBP2AS2
NCBP2
KMT5B
SESN3
PBLD
HNRNPH3
ZKSCAN2
WASHC2A
TSC1
GFI1B
UBE2B
CDKL3
ZNF212
MRTO4
EMC1
PDE6D
COPS7B
ADNP
TCF3
IPO11
TRIP12
FBXO36
TMEM222
TOMM22
PINX1
DOHH
TSPYL2
KMT2D
WDR53
FBXO45
MXD4
SMN2
SMN1
VCP
PKM
NMNAT1
LZIC
ARHGEF12
DDIT4
MTMR2
STX16
RNF151
TBL3
TAF5
MTERF4
CYP51A1
COPS8
ABCF2-H2BE1
ABCF2
CHPF2
GRHL2
PEX3
ADAT2
MCM7
AP4M1
PEPD
SPRED1
NOC4L
DDX51
SPATC1L
SRP68
GALR2
TIMM22
ZFAT
CNOT1
TAOK2
PDCD4
CANT1
OPA1
GTF3C5
DYRK1B
SSNA1
ANAPC2
TSN
ERCC1
SPRYD4
ADPGK
DCP1A
ZNF721
PIGG
OR6B2
NDUFA10
SMAGP
PIK3R3
SPTLC1
TOP2B
COQ7
FUS
SNRNP70
CLCN7
YPEL2
ZFPL1
CDCA5
TMEM262
RPS28
NDUFA7
TMEM242
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
AJUBA
MRPL58
SLC7A6OS
PRMT7
HOXD8
TAS1R1
NOL9
WASHC5
NSMCE2
VIRMA
WDR25
WARS1
TRMT61B
TXN2
GTF2H3
EIF2B1
RCOR1
MRPS35
C8orf33
PI4K2A
NSFL1C
MYLIP
KAT8
PTEN
KLLN
ENDOV
MED23
TMEM199
POLDIP2
TMEM39A
DCAF8
RPLP1
SUPV3L1
SRSF11
LRRC40
EIF4A3
HNRNPAB
ARF4
CFAP410
DNAJC11
RBM42
MANF
PRKACA
SRRD
HPS4
UBQLN1
MRPL39
CCDC77
KDM5A
TIMM21
FBXO15
MOB3A
IZUMO4
LTBR
SPRYD3
TOB2
MED4
COMMD1
CCT4
ACOX3
TRMT44
USP30
DNAJA3
DNAJB12
DUS2
DDX28
ATRIP
ADK
HMGB1
USPL1
SRSF1
MEF2A
VPS37A
CNOT7
TCF12
KCTD5
GTF3C2
ZSWIM7
TTC19
PHAX
IDH3B
RPP30
UBC
ZSWIM8
CHCHD1
MRPL4
GMFB
VPS33A
TIMM50
RFXANK
BORCS8-MEF2B
BORCS8
HBS1L
SPATA25
CTSA
NEURL2
C5orf51
KDM6B
ATXN2L
TENT5C
ZC3H3
MFN2
NLK
MARCHF8
OAZ3
MARCHF9
CDK4
CRBN
PSMD3
ACSL3
ZNF124
ALKBH3
FANCD2
COG2
RDH5
ITGA7
BLOC1S1
COQ9
CIAPIN1
NABP1
DSTYK
PCID2
CUL4A
ARFGAP2
PRKCZ
FRA10AC1
UBN1
GLYR1
ZNF518A
CRYBG2
GNB2
BRF2
PRTG
DDX19A
NFATC4
KDM4B
HIF1AN
HSP90B1
CLN8
PARPBP
NUP37
TSR2
CCDC86
CASC3
JMJD1C
USP42
HSP90AB1
GATAD2A
FAM76B
CEP57
NDUFAB1
TMEM217
TBC1D22B
NOL10
ARRDC4
GHITM
LAD1
EXT1
TFRC
MAIP1
TOB1
ZBTB7B
ARNTL
CHMP1B
GIPC1
MRPS11
MRPL46
MIDEAS
POR
TEKT2
ADPRS
HEBP2
CBWD5
CBWD3
CBWD6
PARL
FAM207A
TOP3B
CCNG2
TSR1
SGSM2
GABPB1
ZFAND4
VAMP1
TIGAR
APTX
DNAJA1
PACC1
ATG7
U2AF1L5
U2AF1
HAGH
FAHD1
MON2
DDX1
MAGOH
REXO1
TIGD6
HMGXB3
THRAP3
RARS2
ORC3
DPP9
ATP5MF-PTCD1
ATP5MF
PLEKHM3
RPS16
TBCB
POLR2I
OVOL3
PMPCA
ENTR1
UBB
TBRG4
EIF4A2
ANKFY1
NDUFS7
NDUFS3
KBTBD4
MRPS15
MCCC1
MRPL37
CYB5RL
TTC4
METTL9
PALB2
DCTN5
TJAP1
MVD
SDHB
NDUFV1
SSU72
SHBG
FXR2
CCDC43
RASGEF1B
UBE2S
TARBP2
MAP3K12
BRAP
ACAD10
SRPRA
AURKAIP1
HAUS5
VAC14
ACAD9
YIPF6
TFDP2
NBPF1
RERE
RAD54L2
RLF
GCN1
POLR3F
DZANK1
JPT1
H3-3B
UNK
WAPL
PSMF1
RPL3
SENP2
SFSWAP
HTRA2
DQX1
CSRNP2
C12orf73
CDC25C
FAM53C
HERPUD1
BRIX1
MALL
SMIM12
ECSIT
RTF2
FAM133B
GOLGA1
ERAL1
VDAC2
IER5
PRDX1
AP5Z1
MARK3
LRRC37A3
MAEA
MYBPC3
CFAP20
TMEM9
FAM149B1
ECD
RANBP2
RPS6KB2
GET3
UQCRC1
PELP1
DCAF10
IFRD2
PFN2
PTPN4
PSTK
TMEM79
SMG5
ZGPAT
ARFRP1
COA6
SCFD1
POLR3D
CNP
RNF41
NABP2
TBCCD1
DNAJB11
SARAF
CMTR1
DPY19L4
FAM204A
SAP30BP
RECQL5
CABIN1
ZW10
TSFM
HIVEP2
BCAS4
GGCX
SECISBP2
MTHFD2
MED9
DIABLO
TMEM126A
TNKS
SP2
RBSN
PPP1R8
UMPS
GTF2H2C_2
GTF2H2C
ZFAND5
PLCXD2
ABAT
WDR11
PHF5A
ACO2
TSR3
GNPTG
ATXN2
NFKBIZ
ZC3H10
RPL41
RPUSD4
FAM118B
SNAPC5
ALG1
SART1
GID4
ATPAF2
ULK2
FBF1
ZNF770
CDKN2AIPNL
EEF2
MRPL55
VCL
SLC25A4
RMDN3
NOC2L
KLHL17
CIC
PKN2
PFKM
SENP1
TIMM44
DNAJC25-GNG10
DNAJC25
MICU2
RABGAP1
PNRC2
AMOTL2
CENPBD1
LTO1
ZNF574
TMEM254
TMED2
DGLUCY
RPS6KA5
NUP160
AARS2
SLC25A26
PBRM1
GNL3
DCAF1
PA2G4
WDR43
CCDC134
ATF4
SLC3A2
TEFM
TOP3A
SMCR8
ETV5
PPIL4
TRMO
ATP5F1B
TULP3
PPWD1
CENPK
RBM25
MRPL20
NUP188
DOLK
LONP1
CATSPERD
PPP4R3B
WDR6
CALR3
C19orf44
ZC3H15
CZIB
THOC1
TPRN
TMEM203
NDOR1
MAN1A2
RAD23A
UBAP2
GTF2IRD2
GTF2IRD2B
GTF3C3
BOD1L1
GTF2I
OAZ1
GSTO2
OSCAR
NDUFA3
H2BC21
H2AC21
H2AC20
TVP23B
PSMD2
TAF15
BRMS1
B4GAT1
RBL1
ZCCHC4
MRPL48
TROAP
COQ10A
TMSB10
CHSY1
MPHOSPH10
MCEE
WTIP
PGBD4
EMC7
ZER1
EXO5
ZNF839
PPP1CC
HOXD9
ANAPC11
ALYREF
ZNF148
OXNAD1
DPH3
ARL6IP1
HNRNPL
FAM156A
FAM156B
NDUFB5
MRPL47
TMEM248
ID2
DDX46
ATP5MPL
UBIAD1
YWHAQ
XPNPEP3
ST13
DNAJB7
MDM4
SMPD4
MZT2B
CDH1
LMTK2
CFAP43
GXYLT1
SON
GART
HGS
ARL16
SRSF6
TFIP11
FPGS
EXOSC8
ALG5
NOP56
RPL22
SUMF1
RWDD1
MCAT
H2AX
ARAP2
PSME3
WDHD1
SOCS4
EID2
FAM89B
ZNRD2
CCDC97
TSNAXIP1
RANBP10
NUP93
CBWD1
RPL17-C18orf32
RPL17
RNF121
LOC100133315
C18orf32
HPS5
GTF2H1
EED
HMGCS1
C19orf48
POLR2C
EFCAB14
PEX26
FBXW2
UBE2D2
ETNK1
SC5D
STOML2
RRBP1
DENR
KIAA0232
MSMO1
DNAJC19
YIF1A
TMEM151A
RPL8
ZNF34
SKA3
MRPL57
TAF6
CNPY4
RCE1
C6orf132
SULT2B1
ABRAXAS2
RRP7A
SEC62
VCPKMT
OGT
IDI1
SAR1B
ELF2
CHUK
EDF1
SLC35A3
PLXNB2
TACO1
EXOSC3
STYXL1
MDH2
DRG2
SENP5
NME6
PHKG2
LDHA
TMEM11
DYNLL1
PSPH
CCT6A
PPT1
ZNF296
GEMIN7
GARS1
ZSWIM6
B4GALT7
LRRC59
ATG9B
ABCB8
DNAJC9
FAM187A
EFTUD2
CCDC103
NOCT
MAML3
PLK2
GOT1
KDM3B
LRCH4
FBXO24
SDE2
SLC33A1
NUS1
FBXO28
PPARD
ZBTB45
CCNL2
KAT5
RAD50
ATP6V1C1
ORMDL3
TMEM256
NLGN2
FBXO31
MAP1LC3B
IL4I1
NUP62
ATF5
CUTC
COX15
SURF6
EIF5
DCPS
UBR4
TUBGCP6
SH3GL2
TNKS2
IARS1
THUMPD1
PSMD12
TFCP2
CCNC
EIF3F
SLC25A38
ZDHHC5
MACROD1
TAF3
SLC9A3R1
NOC3L
GADD45G
UBE3B
KCTD10
MOB4
UCP2
RUVBL1
EEFSEC
C17orf75
TRIP11
SNX19
GATB
POLR2J
MRPL38
MRPS16
FAM227B
DTWD1
RPSA
TEPSIN
NDUFAF8
VPS11
PCNA
DDX41
TMEM184A
SNAPC3
CCNI
PNPT1
TMED9
RNF166
CTU2
NUF2
METTL1
EEF1AKMT3
CYP27B1
ATP6V0D1
AGRP
RPS3
FAM122A
TBC1D22A
STK19
DXO
TAF1B
UHMK1
XPO4
ERI1
SRP9
METTL2B
ALDH3A1
CTDP1
COMMD9
SNRPD3
GUCD1
KLHL11
ZNF292
TSPAN10
NPLOC4
RPL29
PABPC1
NDUFC2-KCTD14
NDUFC2
TTC9C
HNRNPUL2
C16orf70
PLAG1
CHCHD7
C16orf91
HSPA5
TMEM104
NAT9
COMMD2
MAN2C1
CCR10
USP14
TMEM95
KCTD11
XRRA1
SPCS2
SYBU
DNAJC27
LIPA
NOM1
CRCP
GRAMD2B
GOLGA3
SETD1A
EIF2B5
TOMM6
RBBP8NL
ICE2
LTV1
SUGP1
MAU2
THOC3
STAT1
ATAD3B
IVD
SLC24A1
EDC3
DNM1L
TATDN3
NSL1
TCP1
MRPL18
CTNNBL1
SKIV2L
NELFE
UBE2V2
ZNF384
FEM1C
RRN3
RCOR3
HMBS
NAGK
C16orf95
USP15
TFB2M
CNST
ASH1L
LRRC57
HAUS2
CD46
ATR
NOL11
H2BC5
H1-4
ZNF326
SLC39A4
CPSF1
TPT1
RPAP3
KPTN
TTK
TYK2
PSMD8
SYCE2
QRICH1
METTL25
CCDC59
ZCCHC3
PNKP
C14orf93
SNAP47
JMJD4
TMEM183A
UBALD2
FBXL12
MCOLN1
MSTO1
YEATS4
LRRC46
C6orf226
SLC38A2
SOX12
PSMD7
ANKRD36C
C8orf58
CCAR2
TUSC2
HYAL2
TMEM238
RPL28
GFM1
PPIA
ZNHIT2
MRPL49
FAU
NCAPD2
MRPL51
POC1B-GALNT4
POC1B
GALNT4
SEL1L
RANBP3
CEP20
DIP2B
IQCG
LMLN
ASH2L
ANXA7
HEMK1
C3orf18
LIG4
ABHD13
SMIM13
CCDC34
ANXA2
PTPN6
C12orf57
GPS2
PHF21A
C5orf24
PCBP2
PISD
WDR4
KLHL25
CLDN9
SIVA1
ZNF8
CACTIN