ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX535454 | A-375
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◣ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

WDR74
GSTA4
COL23A1
FRA10AC1
STX16
MTRNR2L2
MSH3
DHFR
SEMA6A
PHC2
FAM98B
MTRNR2L8
DRG2
DCAF10
DUX4
TATDN3
NSL1
SMARCD2
MTRNR2L1
GBA
EXD1
CHP1
HPCAL1
C17orf75
FAM227B
DTWD1
H4C14
FLOT1
IER3
STX18
TPT1
CDK5RAP1
WDR36
IST1
TRPV2
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
SLC5A3
MRPS6
RGPD1
RGPD2
MAN2C1
RAD54L2
TACO1
NUF2
PCID2
CUL4A
BNIP1
DCP1A
ANKRD40
DPY19L4
TRIP4
ZC3HC1
MTF2
DSTYK
NME1
LRRC37A3
INTS12
GSTCD
INPP5F
TMEM242
STX3
WDR31
H2BC21
H2AC21
H2AC20
COMMD2
AURKAIP1
H4C15
RBBP5
FCGR2A
SAR1B
SLC24A1
TMEM256
NLGN2
TPRKB
STAT6
H4C11
SIRT4
EIF2D
ANP32E
NKIRAS1
RPL15
TTC4
SLC9A1
SF3A3
SLC25A51
LRATD2
CTNNB1
PLEKHM3
NFE2L2
TEFM
NDUFS3
KBTBD4
H4C12
TEX46
KDM1A
NDUFC2-KCTD14
NDUFC2
PSMD1
PDE4DIP
ERCC1
H4C3
H1-6
NDUFS7
GTF2H2
RPS27
RAB13
MTBP
MRPL13
ACOT7
KANK1
ATXN7L2
ACBD6
CCDC107
SPRY4
SLC20A1
PEX3
ADAT2
H3C13
H2BC18
TTC26
PHLDA1
TOMM5
LAMP1
ZMPSTE24
S100A6
SERPINE2
HMGB1
USPL1
TMEM107
DMAP1
HEXIM2
MRPL40
HIRA
VPS45
ASB6
NMNAT1
LZIC
SMG8
DDIT4
PIGC
ZNF827
LSM5
RBM28
PIGL
NCOR1
WWOX
AMOTL1
POLR3B
TARS2
XPA
TOR1AIP2
TOR1AIP1
RPS6
RASSF5
WDR70
FRG2C
RPL37
ID1
TUBGCP3
NR1H3
ACP2
ANAPC5
NPM1
CCNL1
JUNB
ADNP
DRAP1
C11orf68
ZBTB45
RPL3
JRK
BTF3
RRP15
ALKBH3
TMEM238
RPL28
ZER1
SRGAP2B
SRGAP2C
USP30
MRPL39
CBX5
HNRNPA1
VPS25
DTX2
E2F6
OPA1
FBXW11
ZNF609
FAM228B
SF3B6
SNRPE
DNAJC25-GNG10
DNAJC25
CT45A10
KCTD5
COX16
LDAH
H2BC11
H2AC11
TFAP2B
RPL9
LIAS
SELENOH
LIG4
ABHD13
AARSD1
SNTB1
EEF1A1
SLC35A3
NUFIP2
PDE8A
SSBP2
SAAL1
GFOD2
SPATA24
SOD2
WTAP
RCOR3
EIF3G
RFXANK
BORCS8-MEF2B
BORCS8
POLR2C
ARL14EP
BTG1
FXYD3
NOTCH2
ZNFX1
DR1
FEM1B
PRKCE
ZNF460
G3BP1
ITGB3BP
EFCAB7
SS18
BCL3
MTERF4
MRPS23
MBTPS2
RPS27A
CLHC1
SLC6A15
RPS3
MTOR
TEX9
S100A2
RFX7
RPS20
NSUN4
PTCD1
CPSF4
OTUD7B
NR4A1
ACY1
CLTC
RICTOR
FCRLB
SOX5
SSBP1
SNRPB2
RPS9
ABHD12
RPL11
NNMT
MRPL21
IGHMBP2
SNRNP70
COQ8A
BFSP1
TUBB3
MC1R
ERCC6L2
PPP6R1
RHBDF1
MTMR2
ZSCAN30
SLC44A1
CGGBP1
ATP5MC2
C3orf38
ACBD3
GTF3C6
KCTD3
MRPL1
H1-3
NCSTN
COPA
CT45A7
AGMO
SAGE1
MRPL24
CDKN2AIPNL
RBM45
PDE11A
H3-2
CCDC200
FRG2
PTPN6
C12orf57
R3HDM2
INHBC
LOXL4
CDCA4
UCHL5
RO60
MTAP
H3C10
H2BC13
H2AC13
BCL9
PYROXD2
BOD1L1
POLDIP3
DNAJC14
SECISBP2L
H3C15
H3C14
H2AC19
H2AC18
NDUFA9
AKAP3
STAT3
MOSMO
PSCA
SLC1A4
ZNF76
STARD13
SERPINA3
PGBD2
PTPRG
SEC13
KIF22
PFKFB4
UCN2
MIS12
DERL2
TOMM20
ADGRL1
KCNMA1
LOC100509620
WDR11
ALG1
POLR3F
DZANK1
WWTR1
MRPL53
MRPL48
QSOX1
H2BC5
H1-4
SQSTM1
RPL32
DDX23
IFRD2
H3-3B
RNF151
ZC3H6
FEM1A
TBL3
UNK
CDCA3
PDE6D
COPS7B
CALR3
C19orf44
TMEM41A
TIMM21
FBXO15
NCBP2AS2
NCBP2
ABCF2-H2BE1
ABCF2
BRWD1
ATAD2
TSNAXIP1
RANBP10
KMT5B
PPP5D1
CALM3
PPRC1
UBC
CHPF2
GSPT1
PAFAH2
TMEM11
POLR2J3
WDR53
FBXO45
TMEM199
POLDIP2
TMEM222
SPATC1L
GATB
FOXJ3
CLPB
RBL1
CALM1
SSNA1
ANAPC2
SPNS1
TOMM22
CCDC88A
TSN
MRM3
GLOD4
CYCS
ZSCAN22
MRTO4
EMC1
LRP6
SCGB1C2
SCGB1C1
ORMDL3
TCF3
CALM2
RPL8
COPS8
KBTBD7
TIMM22
UBB
NUP214
ZNF34
CCDC77
BTRC
SMN2
SMN1
CNOT1
KMT2D
PEMT
TMEM115
DOHH
SLC39A1
C16orf91
CFAP410
ZNF337
SCAF1
RRAS
POMZP3
MED23
SYMPK
FOXA3
CHMP4B
ST3GAL2
CTDP1
KPNB1
BOD1
AP2S1
WASHC2C
PSMD3
PRCC
TSSC4
PNKD
AHCYL2
AAMP
UBE2B
CDKL3
SNX17
EIF2B4
ING3
TOB2
TCEA2
CRTC2
PA2G4
CLEC16A
DEXI
ADPGK
HTRA2
DQX1
CKS2
GTF2H3
EIF2B1
PHIP
HEXA
ZNF212
WASHC2A
SMPD3
PEX26
NAGPA
THRAP3
KCTD9
CDCA2
KBTBD6
RPL22
ZFAND2A
MAMDC2
NUDCD1
TSC1
GFI1B
TTC13
ARV1
TRIAP1
PPP1R12B
MED15
ZNF721
PIGG
KDM5A
PARL
UBE2D3
MCM7
AP4M1
ZCCHC4
RPS6KB2
NXF1
RPS28
NDUFA7
ATG14
OSCAR
NDUFA3
ATP5MF-PTCD1
ATP5MF
ZKSCAN2
RPL18A
OAZ3
PKM
INVS
ERP44
IPO11
TMEM127
CIAO1
FAM207A
MAD2L1BP
MICOS13
HSD11B1L
WDR97
MAF1
SCNM1
LYSMD1
C8orf33
RPIA
PANK4
HES5
SCRIB
ZNF444
GTPBP2
NPRL2
CYB561D2
NOP14
GRK4
CDC25C
GPAM
PPP1R12C
DNAJC11
RPS26
WDPCP
MDH1
DUS2
DDX28
FUS
MAIP1
PHB
DIP2A
TMTC3
CEP290
TRAPPC3
ZW10
TMEM79
SMG5
CYP51A1
TNFAIP1
IFT20
EIF4A2
SLC35B4
FAM53C
RANGAP1
ATXN2L
FARSA
CALR
MAPKAPK5
BRIX1
UBR2
ZNF718
MXD4
RBM42
C1orf159
SRSF11
ZC3H10
RPL41
CCAR2
C8orf58
LRRC29
ZNF384
NUP153
ZNF56
UBQLN1
TBRG4
PGBD4
EMC7
MRPS15
KAT7
RLF
BANP
PEX14
DFFA
PINX1
ZNF595
MFN2
INTS9
HMBOX1
C19orf53
PSMD11
CHD2
COMMD1
MRPS35
DNAJA3
UBE2Q1
PSMF1
SLC25A19
WBP1
INO80B
DCAKD
UBQLN4
LAMTOR2
HMGCL
CCT4
KDM4B
GHITM
TAF5
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
ZFYVE1
NSFL1C
GID4
ATPAF2
CCDC146
MMACHC
SPRYD4
PBLD
HNRNPH3
TRIP12
FBXO36
LRRC40
TMEM70
ELOC
STK25
DPP9
RIC8B
LUC7L
AP2M1
VPS37A
CNOT7
NOC4L
DDX51
NMT1
TTC33
DOLPP1
ENDOV
PHF23
GABARAP
CIC
SPTLC1
SP2
MRPL20
SLC33A1
ZNF420
ZGPAT
ARFRP1
PIGU
ZFYVE19
DNAJC17
AHCTF1
ACOX3
NTAN1
COMMD9
FBF1
TEPSIN
NDUFAF8
CSRNP2
HNRNPAB
ARHGEF12
RCL1
MDM4
IDH3B
TCF12
CANT1
RBM6
BIRC5
DNAJB12
MRPL58
RPL29
LETM1
STAU1
ABRAXAS2
EIF3F
GDE1
CCP110
PHF12
LONP1
CATSPERD
SECISBP2
SUFU
ACTR1A
TFPT
PRPF31
RALBP1
TRMT44
SUPV3L1
SMARCAL1
ARF4
HSP90AB1
GFUS
HSP90B1
SNAPC3
SART1
COQ9
CIAPIN1
ZSWIM8
CHCHD1
ZFPL1
CDCA5
UBL7
DDX49
COPE
HSPA5
GTF2I
PHF13
GTF3C5
DNM1L
FDPS
JOSD2
ASPDH
RPL12
LRSAM1
PIK3R3
GTF2H4
CTU1
ARHGAP9
MRPS16
COG2
RCOR1
ZNF749
RAB5C
H2AX
DDX1
TSC2
NTHL1
WASHC5
NSMCE2
SNX1
CIAO2A
TMEM262
DCAF8
BOLA1
DCAF1
DESI2
U2AF1L5
U2AF1
TRAF7
WAPL
MARS1
TMEM59
TCEANC2
NDUFV1
CAND1
GABPB1
IP6K2
CBWD5
TNFRSF12A
THOC6
HCFC1R1
TRAK2
STRADB
CHCHD3
RWDD1
CRBN
SOX6
C11orf58
RPS7
B3GALNT2
TOP3B
PNRC1
TLE3
FBXO46
CBWD3
METTL25
CCDC59
VCPIP1
C8orf44-SGK3
ODF3L2
COX7C
SLC7A6OS
PRMT7
PSMD2
MCU
WDR87
SIPA1L3
TRMT61B
PTEN
KLLN
PIK3IP1
THYN1
ACAD8
ZNF500
SLC3A2
TEKT2
ADPRS
PABPC1
BICD2
SRSF1
PRKACA
SERBP1
USP48
SKIV2L
NELFE
GUSB
SRSF2
MFSD11
SMIM13
SIRT2
NFKBIB
METTL9
POLG
SSR3
TARBP2
MAP3K12
BRF2
IPPK
FAM149B1
ECD
ZNF148
PSMD4
TIMM13
NDUFB5
MRPL47
CCDC90B
RPS16
RPS19
MANF
SRRD
HPS4
UBE3B
KCTD10
NOLC1
GFM1
COQ7
TRUB1
ATF4
MUS81
CFL1
RUVBL1
TMEM217
TBC1D22B
SESN1
RPLP1
CMTR1
SPATA25
CTSA
VIRMA
UBA52
NLK
CAPN10
ASXL1
COA6
POLR2E
ZC3H3
KDM4A
PCBP2
MYLK4
EIF4A1
CFAP20
HAGH
FAHD1
COPS7A
RPLP0
NDUFAB1
LARS1
TFRC
NEURL2
CACTIN
SF3B2
GAL3ST3
BUB3
REXO1
KAT8
SPRED1
WBP2
ATRIP
KPTN
EEF2
BUB1B
WNK1
PARK7
CLP1
TMEM230
XRRA1
SPCS2
SLX1B
SLX1A
BOLA2B
WRNIP1
SRP68
GALR2
FAF1
PPAN-P2RY11
PPAN
ANGPTL6
KMT2B
PTDSS2
CBWD6
SLC4A2
CDK5
EMP3
BOLA2
WDR25
WARS1
RNASEH2C
PALB2
DCTN5
ZFYVE28
CWC25
GPANK1
CSNK2B
ZNF518A
VCP
PHB2
MRPS11
MRPL46
RANBP2
ZNF225
TIGD6
HMGXB3
USP15
C5orf51
BMS1
XPOT
RPP30
ZFAT
RERE
SUMF1
MEIOSIN
HIF1AN
NOL10
CHCHD6
SNRPD3
GUCD1
SEC11C
ZNF189
MRPL50
UBN1
GLYR1
CEP350
CCDC150
EIF2S2
OAZ1
POLR3D
GTF2H2C
GTF2H2C_2
B4GALT7
PHAX
RTF2
RPL23A
RAB34
SPHK2
RPL18
FBXO28
RAD23A
CDK8
C12orf43
CFAP99
FASTKD1
WDR4
PTBP1
NDUFS2
ADAMTS4
FAM156A
SEC61A1
LRCH4
FBXO24
ZNF451
NCDN
KIAA0319L
SUGP1
MAU2
DGAT1
FAM156B
ZNF2
VPS33A
PEPD
TMEM39A
SEPTIN9
SMIM12
CCDC124
RAB1A
NABP1
ZNF527
PANK3
HIRIP3
MRPL3
GET3
C19orf48
TOP2B
FAM83E
TOP3A
SMCR8
PPIA