ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX535453 | A-375
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◣ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

WDR74
PHC2
EXD1
CHP1
SEMA6A
H4C14
STX16
DPY19L4
H4C15
FAM98B
STX18
MTRNR2L2
MSH3
DHFR
MRPL21
IGHMBP2
H4C12
DDIT4
SAR1B
GSTA4
NUF2
IST1
H4C11
AAR2
GBA
NR1H3
ACP2
TUBGCP3
FRA10AC1
MTRNR2L1
C17orf75
SMARCD2
NME1
SLC44A1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
H3C15
H3C14
H2AC19
H2AC18
UCHL5
RO60
H3C13
H2BC18
GALK2
COPS2
DMAP1
TRPV2
H4C5
TPRKB
SLC20A1
PHLDA1
SF3A3
RAD54L2
FEM1B
RRP15
SLC9A1
RCAN1
GTF3C3
JRK
H1-2
RARS1
RASSF5
H3C3
H2BC3
DSTYK
TBC1D19
RPL37
DCAF10
SNAP47
JMJD4
VWA8
RBBP5
ATR
TATDN3
NSL1
TMEM107
EIF1AD
BANF1
NPAS4
H4C4
S100A16
MRPL16
H2BC5
H1-4
CDKN2AIPNL
RPS7
IFRD2
RPTOR
FLOT1
IER3
EIF2D
USP30
STX3
TOP3B
NDUFB7
NOTCH2
SELENOH
RAB5IF
MAN2C1
ACOT7
BCL9
WDR31
CDK5RAP1
DHRS3
KMT2C
TRIB3
ZSCAN30
FCGR2A
PCID2
CUL4A
SIRT4
MTRNR2L8
C12orf73
NDUFA12
SPOP
HPCAL1
BFSP1
DCP1A
GTF2H2C_2
GTF2H2C
OGT
STAT3
YWHAE
DRG2
SNRPB2
CLUAP1
C16orf90
H2BC21
H2AC21
H2AC20
PDE4DIP
SSBP1
TACO1
SPRY4
SCNM1
LYSMD1
VIRMA
COMMD2
TEFM
RPS6
WDR36
KLHL20
TRIP4
HEXA
TRIAP1
C11orf49
BNIP1
S100A2
METTL9
LRRC47
E2F6
CT45A10
LAMP1
SLC24A1
PEX3
ADAT2
MTF2
NDUFS3
KBTBD4
YARS1
S100PBP
CSRNP1
JUNB
IRS2
WDR24
HMGB1
ZNF212
USPL1
EEF1A1
VANGL2
LARS2
ST3GAL2
TEKT2
ADPRS
H3C2
H2AC4
H4C2
TMA16
KANSL3
FER1L5
SPATA24
ZNFX1
COL23A1
MRPL44
INTS12
GSTCD
SPATA25
CTSA
NEURL2
MANBAL
EIF3G
ADPRHL1
STAT6
VPS25
IPO4
MRPS23
FBXW2
AP3B1
PDE6A
GTF2H2
UNG
ALKBH2
CCNL1
TMEM101
TMEM256
NLGN2
PSMF1
CHD2
RTN4
GPRC5A
IFI16
PYDC5
DPY19L3
GSTP1
WWP2
SNX17
EIF2B4
PLEKHM3
NECAP2
ALG10B
GAB2
ADNP
MRPL3
RPL32
DNAJC24
DCDC1
DPP9
GUSB
NDUFS7
NOC4L
DDX51
TTPAL
VWA5A
TMEM242
ZNF391
AGMO
TOR1AIP2
TOR1AIP1
SLC3A2
CTSC
DDX1
RTF2
DNAJC25-GNG10
DNAJC25
DMAC1
GGNBP2
RNF151
TBL3
HTR5A
S1PR2
PAFAH2
ARHGEF12
WDR11
NFXL1
H4C6
NDUFC2-KCTD14
NDUFC2
EFNA1
SSBP2
STMN3
RTEL1
RBM28
SREK1IP1
CWC27
SNRPB
ATF3
ARIH1
ZC3H6
TRUB2
COQ4
ACBD6
H1-3
DDX23
TVP23B
PMPCA
ENTR1
NCBP3
RCOR3
RPS2
RAB18
CCDC107
EXOC3L1
E2F4
H3-2
ITGA3
DIAPH1
RINT1
INO80C
POGZ
DRAP1
C11orf68
MNAT1
ANKRD18B
KBTBD6
CCNC
TEX46
KDM1A
IQSEC3
INTS1
CHD1L
PRKAB2
COX16
KCNMA1
TESK1
SH3GL1
CHAF1A
SRFBP1
CCND1
AVEN
CPLX2
SCGB1C2
SCGB1C1
ZBTB45
ALG10
EDC4
MTERF1
ODC1
ZMPSTE24
FZD1
MUS81
CFL1
ZSCAN25
PRKCE
SEC16B
AURKAIP1
COG2
TPR
ODR4
RBM45
PDE11A
TRIB1
ZNF827
TUBB1
TTC4
FAM227B
DTWD1
RPS8
SLC25A51
RACK1
GMEB2
RILP
DPH7
INTS5
UFSP1
ACHE
SERPINA3
CASC3
C10orf88
PRADC1
CCT7
RPL26
RGPD1
RGPD2
UQCC1
KNL1
ANP32E
PFKFB4
UCN2
LRRC37A3
PRRG2
NOSIP
CT45A7
CT45A6
CT45A3
SLC33A1
PSMD6
GOSR1
ATXN2
TRPC4AP
OTUD7B
MUC3A
CSNK1D
NOB1
NOC3L
METTL15
KIF18A
PIP5KL1
HEXIM2
KMT2D
ATP5MF-PTCD1
ATP5MF
CDC73
MACC1
TTC33
CCDC86
POLDIP3
MRPL38
THAP5
DNAJB9
H4C3
H1-6
SRA1
WWOX
COQ5
NFATC2
FAM133B
DUS1L
RRN3
TMEM238
RPL28
H1-0
GCAT
MTAP
GTF2I
SRSF6
TIGD1
EIF4E2
DHX8
ZNF106
SNAP23
CPPED1
ILVBL
GRAP2
ZNF253
ORMDL3
BANP
RUVBL1
SLC35A3
ZC3HC1
CHI3L2
FXYD1
LGI4
MED23
BOD1L1
RFXANK
BORCS8-MEF2B
BORCS8
RPL23A
RAB34
NCOA3
PPP4R3B
PSMB6
TUT1
ZBTB37
RCC1
NSUN4
MTHFS
WWTR1
MRPL58
RPS27
RAB13
BICD1
ATF6
SNTB1
SOX10
DUS2
DDX28
TTI2
ANKRD40
RCC1L
ADAD2
BAGE5
BAGE4
BAGE3
BAGE
TAF1C
ZNF554
ZNF830
CCT6B
MRPS14
BRD2
NBPF1
RPL11
NHEJ1
TMEM40
H2AX
RPS14
LSM8
TP53BP2
ZSCAN22
RPL29
RPS3A
ITGB3BP
EFCAB7
SUPT5H
FRG1
LRRC37B
C7orf61
TRIM60
NMNAT1
LZIC
RPL13
SNRPE
USP2
TEX9
INPP5F
RFX7
TNFSF14
FUS
DDX19B
AARS1
CFAP298-TCP10L
CFAP298
RNF216
ARID1A
REX1BD
PYGB
SPIN2B
CCDC88A
SNX19
LDAH
EXD2
SIT1
AP4E1
RPL7
RDH10
NAA20
TAF13
HOOK2
H2BC8
H2AC8
AK3
GPR176
CFAP20DC
PCOLCE
CALR3
C19orf44
C16orf91
WNK1
TRA2B
CAAP1
PARP4
TRIM48
ZNF708
EMC3
SEC13
RFX3
CHCHD2
MFF
SLC26A2
SDHAF3
YJU2
MYBPC3
KCTD3
ABHD12
TRAF1
SRGAP2B
SRGAP2C
EIF4A2
ZC3H10
RPL41
SART1
ZER1
NBN
ANAPC5
MBTPS2
THOC5
RAF1
HNRNPA1L2
TENT4A
PDE6D
COPS7B
LMNA
NDRG1
PBK
TBL1X
ZCCHC4
C8orf33
MRPL48
AARS2
LRRC59
HNRNPH1
OSBPL11
MRM3
GLOD4
WBP1
INO80B
RBM14-RBM4
RBM14
FAM189B
TRIM46
KRTCAP2
MKRN1
ITPKC
COQ8B
CERS2
ANXA9
TFAP2B
LSM5
SPDYE14
SPDYE10P
AVL9
POLR3B
NFE2L2
VPS72
RMDN2
DNLZ
NREP
H3C10
LYPLAL1
H2BC14
H2AC14
PLEKHG5
PPP1R1B
MRPL39
WASHC5
NSMCE2
FAM228B
RPL13A
SF3B6
LDHA
RPL7A
MED22
ZNF791
ZNF490
SLC36A1
EPHA3
VPS33A
FANCD2
MTR
POLR2J
ERMARD
PCOTH
MIPEP
GLIPR1L1
CAPS2
STEAP1B
TMEM115
CWC25
SEC61A1
MRPL40
HIRA
RANBP6
VPS45
LTBR
MARCHF7
NDUFAF5
ESF1
ZNF564
LAMTOR5
CSKMT
C11orf98
C16orf72
COIL
ZNF443
VIM
DEF8
HOXB3
RFFL
CDCA3
POLR2J3
DNM1L
GTF2IRD2
GTF2IRD2B
UTP3
SMG8
CDC16
H2BC12
H2AC12
MEOX2
ZNF56
REXO4
ADAMTS13
ARMH3
MCOLN1
LIG4
ABHD13
CRB1
APH1B
TAF5
TOMM20
ZNF45
H3C8
H2BC10
VWA1
LTBP1
PARP2
ZBTB40
LONP2
ABCC11
PKIG
YBX3
EML2
MBNL2
LOC100509620
SURF6
PSMB4
STMP1
TPK1
TTC26
RBM17
PNPO
USP4
DCUN1D5
MAPRE2
COL16A1
CDH19
BOD1
LTA4H
FBXO38
NACA
TUBA1C
BCL3
LRP6
RPL5
STK4
RBM39
BBS1
KDSR
ELAVL3
PLPP4
CALM2
ZNF337
POLG
ELOB
KDM6B
ZNF76
WIZ
CEP120
ATAD2B
CHD1
ZNF205
SH3TC2
UNK
EIF1
MCL1
TAF3
ID1
TARS2
FAM78B
DDX5
CEP95
UBXN1
RPS21
HEMK1
C3orf18
SAMD10
PRPF6
TAGLN2
KMT2E
SRSF5
TIMMDC1
TMEM170A
IPP
PSMB3
PCGF2
EPB41
ZNF561
RASA3
TMCC2
IL6R
XKR7
PLA2G4C
MYPN
IDH3B
DCAF8
DHX9
H4C8
FCRLB
CTNNB1
COMMD1
CCT4
FAM187A
SACM1L
RNF6
GRPEL2
H2BC11
H2AC11
MLEC
PEX2
COA1
SPRED2
GPATCH4
RHBDF1
PRNP
RBSN
SNRPD1
BUD13
BORCS5
LSM12
G6PC3
CAPRIN2
PPP2CB
PTPN13
ARGLU1
APP
ABCA1
IFT46
WASHC2C
TNFRSF12A
THOC6
HCFC1R1
PTPN6
C12orf57
CBX5
HNRNPA1
KIAA0895
GTPBP3
ANO8
MAGEA2B
MAGEA2
CLDN6
ACOX3
TRMT44
CCDC90B
DNM2
DYNLL1
GFM2
EIF2B3
SRSF9
ATP5F1E
NANOS3
ERMP1
GFOD2
PDE8A
INTS2
OPN3
CHML
BACE1
FXYD3
ABCA10
MTERF4
THOC3
SLC35E1
CNP
DIDO1
LUC7L3
GID8
DISC1
SLC25A21
LTBP3
MRPS15
SPRED1
DNAJB1
TECR
BAIAP2
GNPAT
C1orf131
ALDH9A1
SEC22B
LETMD1
TIMM10
MC1R
SPIDR
TUBB3
OR2L13
OR2AJ1
FLRT3
TRAPPC3
BMS1
ARL14EP
THEM4
COMMD4
ARMC8
ABCA3
SRRM1
TMEM167B
SPRY2
ZNF579
PKD2L2
SOD2
WTAP
AHCY
EFCAB2
H2BC7
NECAP1
H3C4
H2AC7
KLHL9
GOLGA4
INPPL1
ESD
ISLR2
ABCF2-H2BE1
ABCF2
MANF
SH2B1
TRMO
RPL35
ARPC5L
ZBTB17
C18orf25
RPL37A
SLTM
ABHD2
HM13
PGLS
NAPEPLD
GRHPR
GEM
NDUFA4L2
SNTB2
ARCN1
USP28
DUSP4
PCARE
UBAP1L
NAGPA
PANK4
HES5
PSMD11
TMEM186
PMM2
C2orf42
H2BC4
H2AC6
SLC25A28
MMAA
PIKFYVE
MTRF1
LARP1
ADAM17
ANKRD13D
RGL1
ARPC5
NAA16
ZNF609
SPATC1
DAB2
MAMDC2
FAM207A
MTMR2
FNIP1
BLOC1S2
TSSK6
NDUFA13
UTP25
H2BC13
H2AC13
CASP7
ABR
TIMP1
TMEM41A
SPRYD4
GNAI2
MRPS18C
HELQ
ABCB10
DCLRE1B
AP4B1
B9D1
H4-16
H2AJ
MAGI2
TSN
CDC25C
FAM53C
LRCH4
FBXO24
MTMR9
FBXL18
CCDC174
SEPSECS
MRPL1
MIDEAS
H3C12
H2BC17
H2AC17
DPH6
BTG1
APBB2
FGFBP3
LOXL4
ZP4
ARF4
TIGD6
HMGXB3
ZC3H11A
ZBED6
ATP6V0D1
AGRP
POMP
SFPQ
MAPKBP1
CIAO2B
CES2
RPL34
SLC35A4
APBB3
RSL24D1
RPL30
CTHRC1
BOC
GIP
CES4A
MDM4
SLMAP
SLC30A6
IER5L
STX6
SUPT20H
RGS2
SLC39A6
ELP2
SCRN1
LIFR
CEMIP
HMCN1
KCTD5
MTIF2
EMC4
DELE1
ZNF696
CLASP2
NQO1
MKRN3
MAGEA6
SLC6A15