ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX447603 | MM.1S
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◣ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

TMEM115
TCEA2
IFRD2
PANK4
HES5
CDCA3
CLPB
ST3GAL2
BOD1
AP2S1
SCNM1
LYSMD1
SLC39A1
CRTC2
DDX23
FEM1A
PNKD
AAMP
MRPL24
ORMDL3
AHCYL2
CALR3
C19orf44
GSPT1
TSNAXIP1
RANBP10
H3-3B
UNK
PHB
PAFAH2
TMTC3
CEP290
PPP1R12B
PRCC
TTC33
SMPD3
CHMP4B
UBQLN4
LAMTOR2
PHF12
C1orf159
PPRC1
GFUS
BOLA1
ATP5F1D
CBARP
LARS1
MMACHC
CTF1
BCL7C
GDE1
CCP110
NPRL2
CYB561D2
NOP14
GRK4
USP48
DYNC1I2
INVS
ERP44
MICOS13
HSD11B1L
SYMPK
FOXA3
MAD2L1BP
GTPBP2
TFEB
SCRIB
PEMT
SMARCAL1
BTRC
MED15
FBXL19
TMEM11
ZFYVE28
CFAP99
FASTKD1
SNX17
EIF2B4
ODF3L2
UBAC1
SCAF1
RRAS
TSSC4
NTAN1
TSC2
NTHL1
WNK1
GTF2H4
C19orf53
ZSCAN22
ZNF749
ZNF225
TOR1AIP2
TOR1AIP1
AP2M1
WDPCP
MDH1
TNFAIP1
IFT20
TTC13
ARV1
TFPT
PRPF31
TBL3
BUB1B
RPL8
ZNF34
CLEC16A
DEXI
RPIA
NUDCD1
VCPIP1
C8orf44-SGK3
C16orf91
DSTYK
NUDT13
KMT2B
ABCF2-H2BE1
ABCF2
CHPF2
SIRT2
NFKBIB
BANP
SLC4A2
CDK5
STAU1
INTS9
HMBOX1
KBTBD6
ZFYVE19
DNAJC17
ING3
WDR87
SIPA1L3
PEX14
DFFA
PPP1R12C
KBTBD7
TRAPPC3
PNPLA6
COX7C
TMEM70
ELOC
ZFYVE1
ZNF444
CTU1
CCDC90B
EMP3
DCAKD
NMT1
ZNF554
GATB
RABAC1
YPEL3
TBX6
CNIH4
TMEM59
TCEANC2
LETM1
ZNF337
TMEM127
CIAO1
ZNF224
TTBK1
SNX27
ZNF235
STK25
RAB29
CCDC146
SDCCAG8
CEP170
TIMM21
FBXO15
LMNB2
ZNF169
TLE3
ZNF56
DDX49
COPE
SLC35B4
ZNF420
TIMM13
JOSD2
ASPDH
DESI2
BUB3
HTRA2
DQX1
FBXW11
CAPN15
TPGS1
ZNF189
MRPL50
TRIP10
GPR108
WDR46
PFDN6
PDE6D
COPS7B
PHF13
FGF11
TMEM102
RIC8B
MYLK4
WRNIP1
MXI1
UBR2
PSMD11
WDR97
MAF1
ZC3H11A
ZBED6
B3GALNT2
VPS50
HEPACAM2
TMEM143
SYNGR4
TNFRSF12A
THOC6
HCFC1R1
PANK3
SLMAP
CLP1
TRAF7
GPT2
PPP1R13L
POLR1G
SERPINI1
PDCD10
TMEM43
CHCHD4
CWC22
ZNF419
AHCTF1
EMILIN1
TMEM160
NCLN
CA11
CNOT1
SOX6
C11orf58
PTDSS2
SLC17A7
TRAK2
STRADB
GINS3
CCDC150
NCDN
KIAA0319L
LRRC29
UFSP2
C4orf47
TMEM245
TMEM69
GPBP1L1
THRAP3
NAA38
TMEM88
CYB5D1
LTA4H
TMEM101
FBXO48
APLF
ZNF32
ZNF527
RALBP1
FAM193A
RPGRIP1L
FTO
PRR14
MED27
RPP40
PTBP1
GUSB
VIPAS39
AHSA1
IFRD1
ING4
PEX26
GPANK1
CSNK2B
LY6G5B
MED11
RNASEH2C
WIZ
MUS81
CFL1
SSBP1
SMUG1
OSCAR
NDUFA3
RANGAP1
ZBTB7A
LUC7L
ZNF354A
PPP6C
SUFU
ACTR1A
CDK5RAP2
CTDP1
ZNF37A
ZNF747
RPS6KB2
SCAMP4
ADAT3
TXNDC9
EIF5B
RAB1A
GSK3A
USP31
RBL1
RPS3
SLC25A19
ZNF230
USP35
KCTD21
PSENEN
LIN37
NFXL1
HSP90B1
FHIT
ARHGAP9
MARS1
WASF1
CDC40
VAPA
RALGAPA2
DDX47
PSMD4
FAM185A
CDCA8
C1orf109
ZNF384
SLC50A1
DPM3
RPL18A
AURKAIP1
QTRT2
CCDC191
NDUFS2
ADAMTS4
CAND1
PRRG2
NOSIP
THAP4
ATG4B
VEZT
FGD6
PSMD2
POLR2E
CARS1
MITF
MACC1
WBP1
INO80B
ZNF25
MGRN1
CCDC174
RBM6
GPKOW
ZNF350
FDPS
METTL26
ZW10
SEC11C
LEMD2
CWC25
BIRC5
FBXO46
MEIOSIN
WDR53
FBXO45
ZNF133
B4GALT7
SNX1
CIAO2A
CRK
RASIP1
IZUMO1
COMMD9
RPS20
BICD2
CNPY2
CMPK1
WAPL
AKIRIN2
ZNF227
ATP6V1G2
NFKBIL1
MPI
CHCHD6
PHF23
GABARAP
CNOT4
DVL2
PES1
MYBL1
FAM222A
RPS7
PA2G4
MORF4L1
PSMB4
NUP153
KATNB1
STK17A
SPC25
CHCHD3
PCM1
MAMSTR
SSR2
NUP205
CAPN10
UBE2Q1
PIGU
RAB3C
NDUFS7
ASXL1
GGPS1
ARID4B
WBP2
RPS26
ZNF2
EML6
LSG1
THAP11
NUTF2
CENPT
LRFN3
CLDND1
ATP5PO
ARMH3
GALM
TLE4
PSMC4
RAB8B
ZNF45
CDC25C
FAM53C
NFKB2
RBM41
ZNF277
DOCK4
RAB30
NUF2
THYN1
ACAD8
BDP1
ILF3
ZNF436
ATP5MF-PTCD1
ATP5MF
ZNF500
DLG4
ACADVL
SLC37A3
SMIM13
MAX
IPPK
ZMAT5
UQCR10
NR1H3
ACP2
CCNL1
UBL7
GPAA1
EXOSC4
PRKCSH
CCDC151
ALKBH8
POLRMT
SF3A3
KCNC3
ZNF584
PPP2R5B
RETSAT
ELMOD3
ZNF862
ZNF628
NEDD8-MDP1
NEDD8
GMPR2
DNM1L
DCP1A
UTP11
TRUB1
ADSS2
BABAM1
NKIRAS1
RPL15
ZNF451
CEP97
TRABD
MTR
DHX33
PGBD4
EMC7
UQCRH
LRRC41
ZNF155
MED23
ABCC5
TMEM33
ATG4C
HBP1
NOP53
TMED9
HIRIP3
ZNF343
TERF2
DGAT1
ZNF17
FBXL18
ZNF165
EIF2S2
YWHAG
EIF1B
HSPA13
R3HDM1
ZRANB3
ACP6
KAT7
FAM228B
SF3B6
CXXC1
DCAF1
SPHK2
RPL18
FAM83E
IQGAP3
NR6A1
GID4
ATPAF2
DUS3L
ZCCHC8
CLPP
HSPH1
NPL
MRPL54
APBA3
DNAJC28
ZNF226
C19orf67
ZNF484
UCK1
FAM168A
SEPTIN9
EXOC4
FBF1
MRPS25
SCYL3
SLX1B
SLX1A
BOLA2B
BOLA2
BOLA2-SMG1P6
RPS27
RAB13
RBBP5
RPL23A
RAB34
IGSF8
HDAC8
UBA1
TIMM22
ZNF567
KNSTRN
DARS2
CENPL
ZNF586
ATP6V0B
DPH2
DEDD
DPM2
TMEM109
UFD1
CDC45
POGLUT2
BIVM
ZNF764
NDUFS3
KBTBD4
CNOT6
TSNAX
ZNF268
TOR2A
SEC61A1
DYNC2LI1
GPR137
ZNF417
TMEM150A
SESN1
CEP57L1
DERL1
ZBTB45
SETMAR
TTC1
ZNF180
PUS3
DDX25
OPA1
SLC38A9
CCDC124
TM9SF4
ZNF772
KBTBD8
SUGP1
MAU2
ZNF221
SYPL1
SAP30
INTS1
ZCCHC4
RAB5C
ZNF805
LMTK3
REXO2
CIC
NDUFB5
MRPL47
BET1
RPS19
PPP1R7
PASK
SHPK
CTNS
CIZ1
DNM1
ZNF585A
TSACC
CCT3
ATE1
ZNF776
IPO7
GEMIN6
ZNF599
SSR3
CDK8
OAZ3
TRMT1L
SWT1
DMAC1
FAM207A
KPTN
ETFDH
C4orf46
ITPR1
CDK9
L3MBTL2
TULP2
NUCB1
FIS1
ZNF317
NDUFB10
SKP2
LMBRD2
RPL3L
EIF2D
ZNF540
ZNF571
LCORL
TSN
ZNFX1
M6PR
KLRG1
WDTC1
ACLY
RBL2
ZBTB7B
PNISR
ZNF274
TLE1
ZNF688
ZNF550
RNASEH2A
PRDX2
PSMA2
MRPL20
TPR
ODR4
PEAK1
HMG20A
TMEM94
POLR1B
ZNF773
SLC39A13
THAP1
UBE2V1
ZNF565
ZNF146
ZNF547
TRAPPC2B
CILK1
FBXO9
TBC1D17
AKT1S1
CSRNP2
ENOX2
KCTD5
RRM1
TP73
WRAP73
TSNARE1
METTL25
CCDC59
TRIM23
TRAPPC13
SHLD3
PHB2
TRUB2
COQ4
ZNF211
PPIB
PHLPP1
PABPC1
RPLP2
PIDD1
UBXN8
NUP107
SLC33A1
NCOA3
JTB
NAPB
CALCOCO2
XPOT
AHCY
LRPAP1
ABRAXAS2
JRK
ZSCAN5A
GDAP1
MZF1
ZNF774
CMAS
SSNA1
ANAPC2
STMN3
RTEL1
WDR18
GTF2I
VPS4B
ZNF446
SPEGNB
GMPPA
NCBP2AS2
NCBP2
TOR1A
TMEM41A
CCAR2
C8orf58
R3HCC1L
SFXN5
BCORL1
PSMB6
FAM149B1
ECD
MRPS22
OSBPL11
CANT1
TTLL11
ABLIM2
PPIL2
WASHC3
MEN1
SNX16
WRAP53
TP53
CCND3
TAF8
PTCD3
POLR1A
PRKCI
ZNF354C
AMN1
ZNF324B
RPL12
LRSAM1
ZSWIM9
LIG1
SNRPB2
HEXIM2
C12orf43
KLHL24
CC2D1A
C19orf57
SF3B2
GAL3ST3
FTL
ZNF140
SPECC1
ZNF582
SEL1L
ZGPAT
ARFRP1
BCKDK
BLOC1S5
LRWD1
ALKBH4
TMEM230
KIF15
KIAA1143
CUEDC2
MRPL19
RPL29
SNAPIN
FAM193B
SPNS1
C1orf54
APH1A
WASHC4
CFAP410
AQR
MRGBP
SHLD1
WDR24
METTL3
AMMECR1L
ZNF573
ADO
DMAP1
MYL6B
RACGAP1
SMIM11B
SMIM11A
LRRC45
CENPX
ZNF394
ZKSCAN5
DENND1A
CEP128
MEA1
PAK2
STX18
CCDC117
CLINT1
PRAF2
CIAO3
ARPP19
EMSY
AP2B1
DNLZ
COPS8
POMZP3
RCAN1
NR1H2
ZNF24
ATG9B
ABCB8
SPDYE14
SPDYE10P
CASTOR2
EDEM3
UBE2D1
COA3
CNTD1
RAD51AP2
LRGUK
ZNF416
ZIK1
GFM1
SCAMP3
ZFYVE26
RAD51B
SMIM30
PCNX3
MAP3K11
ELP6
UBE2N
SEC13
PGM2L1
GAPVD1
YJU2
CPEB4
PDE4DIP
C8orf76
SLC38A7
RAD54L2
RPS13
TMED10
SYT5
STRN
RAB7A
TFAP4
C15orf40
DUS1L
LMNA
MEX3A
BRD3
AP5S1
STMN1
PDIA5
LRRC8A
KYAT1
ADPGK
LMAN2L
NOP16
HIGD2A
EIF3F
MVB12A
SMN2
SMN1
RPL37
CAPG
SH2D6
STX10
IER2
STARD10
MTRF1
RPP30
NGB
MRPL21
IGHMBP2
ZSWIM8
CHCHD1
CCDC77
CPOX
ZNF473
VRK3
MRPL11
DPP9
ESCO2
CCDC25
TRMT10A
MTTP
SELENOH
FAM89B
ZNRD2
POLR2J3
TOE1
MUTYH
MAP3K10
NOLC1
YIPF2
TIMM29
CEP350
ZNF589
PLEKHB1
TRIP4
PCIF1
MRPL16
KIF5A
DCTN2
TUT1
EIF3C
EIF3CL
RAB1B
DNAJA3
ZFP91
LPXN
TMEM214
PEX12
SHOC2
BBIP1
SPAG8
HINT2
ZNF624
IRF2BP1
ZSCAN12
NICN1
TOGARAM1
KLHL28
MORN4
RTTN
SERP1
EIF2A
FCSK
ZNF548
PTRHD1
CENPO
ZNF181
ZDHHC14
ZNF721
PIGG
C7orf25
METTL17
ANXA2R
CAMLG
ZNF605
TRIM16
ITSN1
CRYZL1
C16orf86
TMEM186
PMM2
ZNF26
MRPS15
SKIV2L
NELFE
TMEM147
ANKRD40
ZUP1
MRPL3
SPEF1
TSSK6
NDUFA13
ACOX3
TRMT44
MTMR9
TVP23B
PURB