ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5501661 | A-375
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◣ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

WDR74
GSTA4
H4C14
H4C15
MTRNR2L2
MSH3
DHFR
PHC2
NUF2
COL23A1
MTRNR2L8
MTRNR2L1
FRA10AC1
EIF2D
DSTYK
DCP1A
S100A2
GBA
TRIP4
TMEM107
RAD54L2
TBC1D19
H1-2
MUC3A
HMGB1
USPL1
CDK5RAP1
STX16
SCAND1
CWC25
DRG2
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
SF3A3
RBBP5
POLDIP3
RPS7
STX18
NDUFS3
KBTBD4
DHX8
H4C11
TRIM48
PLEKHM3
ATP5MC2
RNF151
TBL3
NBPF1
SAR1B
RPL37
TRIAP1
H1-3
RGPD1
RGPD2
SMARCD2
ZNF296
GEMIN7
S100A16
RCAN1
SELENOH
CTNNB1
NME1
CCNL1
ZBTB45
SECISBP2L
SSBP1
CRB1
UTP3
H2BC21
H2AC21
H2AC20
TTC26
MTF2
SLC24A1
MRPS23
GTF2H2
H4C6
BNIP1
H3C15
H3C14
H2AC19
H2AC18
MAN2C1
INTS12
GSTCD
RPS6
WDR36
FAM3C
YWHAE
MLEC
SERPINE2
RPS2
H3C13
H2BC18
ERCC1
DMAP1
LY6K
DPP9
LRRC37A3
GTF2H2C_2
GTF2H2C
SNAP47
JMJD4
AURKAIP1
TATDN3
NSL1
TUT1
PSMF1
SIRT4
PPP6R1
RAB5IF
RBM15B
STAT3
ATF6
LAMP1
TBC1D13
MRPL30
MITD1
H3C3
H2BC3
TARS2
TMEM222
ALG10B
RPS27
RAB13
MYO9B
HAUS8
FOXJ3
C17orf75
POLG
YIPF2
TIMM29
METTL25
CCDC59
EFCAB2
RARS1
HPCAL1
MRPL16
SCNM1
LYSMD1
H2BC5
H1-4
TBL1X
RPL12
LRSAM1
H4C12
PTPN6
C12orf57
NOTCH2
PSMD3
SMG8
KMT2C
RPS20
DDIT4
FAM227B
DTWD1
GTF3C3
TEX46
KDM1A
MRPL21
IGHMBP2
NOC4L
DDX51
COMMD9
JRK
COX5A
KBTBD6
SLC35E2B
TACO1
COMMD2
LARS2
PDCD6
NR1H2
NDUFC2-KCTD14
NDUFC2
U2SURP
STX1A
MDM4
SLC44A1
UBQLN4
LAMTOR2
ZNFX1
SDHAF3
KRR1
ZER1
TAGLN2
MED18
RANBP2
AGK
GNAI2
TSSK6
NDUFA13
ITPKC
COQ8B
NKIRAS1
RPL15
FAM98B
NOB1
MAPK1IP1L
NUP107
USP3
CDK2AP1
DUX4
MTERF4
TCEA2
RUVBL1
NCBP3
SSBP2
TTC1
SAMD4B
SPRY4
NMNAT1
LZIC
RPS28
NDUFA7
ATP5MPL
TAMM41
H3-2
MED23
TSPAN10
NPLOC4
PRKCE
BCAR1
SEC16B
SEC13
TSC2
NTHL1
DPY19L4
CDKN2AIPNL
MTIF2
KLHL12
NDUFA12
MRPL58
CCDC90B
TVP23B
PPRC1
GALK2
COPS2
USP4
WDR24
HEATR1
PMS2
AIMP2
SLC27A5
SLC25A51
MKRN2OS
MKRN2
ASB6
CDC73
MRPL1
MBTPS2
KANSL3
FER1L5
NPAS4
IGFBP6
SOAT2
PCID2
CUL4A
METTL9
MRPL19
POLR2J3
DDX1
INTS1
FRG1
KDM8
PSMD11
PTEN
KLLN
NLE1
ANP32E
SRSF4
ACTN1
KNL1
RPS3
VPS25
ELAVL3
NSFL1C
MRPL53
PDE8A
FXYD3
GAPDH
INTS5
TTPAL
ARL2BP
CCDC88A
DCAF10
VPS33A
IQCH
AAGAB
AAR2
UBOX5
FASTKD5
BUD13
ZBTB37
RINT1
METTL15
KIF18A
SNRPB
H4C4
ZSCAN22
NCOA3
H4C5
TRMT61B
TMED2
MAT2A
RBM39
CLUAP1
C16orf90
PDE4DIP
GFM2
ID1
SLC25A32
DCAF13
NFE2L2
PRKCSH
CCDC151
LONP2
ABCC11
SLC25A13
EIF3E
ADPRHL1
ANGPTL4
PEMT
DPH7
BCL3
UQCC1
DNAJC24
DCDC1
DNAJC11
TOR1AIP2
TOR1AIP1
UBL7
AP5Z1
POMP
STARD4
SLC20A1
BBS1
MICALL1
CDCA3
YWHAZ
CATSPERG
H3C8
H2BC10
SSNA1
ANAPC2
FBXO46
TTC4
MEIOSIN
YARS1
S100PBP
SNAPC5
VTA1
NMBR
H4C9
AP3B1
ALDH7A1
CALM2
FBXW2
H2BC8
H2AC8
PARP2
RMDN2
PHLDA1
ASB2
ST3GAL2
NUP153
ELAVL2
WASHC2A
ADNP
MRPL38
SNRPB2
DDX59
ARID2
CCDC15
SULT6B1
SLC35E1
RPL27
CHD1L
H4C3
H1-6
PRKAB2
LZTR1
ZNF3
LRRC46
WDR31
H2BC11
H2AC11
USP30
PANK4
HES5
PEX14
DFFA
CIAO3
H3C2
H4C2
OGT
SACM1L
ALDOA
PPIP5K2
GOT2
SPRY2
PA2G4
PPP6C
GARS1
AP1G1
HEXIM1
ZC3HC1
ZBTB40
RHOT2
LRATD2
H4C8
VPS4A
PSPC1
ZNF721
PIGG
H2AC4
TPT1
LIMA1
COL16A1
ZMPSTE24
TSNAX
SNRPE
TMEM101
SAMD10
PRPF6
NUP188
DOLK
ELK4
H3C12
H2BC17
H2AC17
UBA2
CCDC125
TCHP
MRPL24
TEFM
KIF15
KIAA1143
NAGK
PSMD9
HPD
DRAP1
C11orf68
GORAB
EPHA3
C8orf58
CCAR2
ECSIT
MRPL40
HIRA
NECAP2
WWTR1
DISC1
EEF2K
AGMO
ZC3H10
RPL41
BANP
RAD23A
TRPC4AP
ZSCAN25
HDGF
AP2B1
CCDC174
ZNF770
SRRT
PPID
PLEKHB1
ZCCHC4
PARK7
ARL14EP
LSM12
G6PC3
CDK12
SLC9A1
COG2
TSR3
GNPTG
EPRS1
WIZ
NRF1
SMG7
C1orf53
TOP3B
SH2B1
TUFM
MRPS31
PRRG2
NOSIP
ZNF594
GOSR1
POLR3E
TTI2
VPS72
MRPS24
B3GAT3
DHRS3
TRIM62
ATP5MF-PTCD1
ATP5MF
COMMD1
UCHL5
RO60
USP48
STYXL1
MDH2
ANXA2R
AMOTL1
PDE6A
GID4
ATPAF2
SART1
ATR
WDR70
NME6
RRP9
PARP3
MRPS14
RPL10
EIF3H
SYMPK
FOXA3
TMEM127
CIAO1
MTMR2
CCDC200
SLC39A13
CSRNP1
CHMP4B
ZNF212
POR
TOB1
STAT1
CREBL2
IPO4
ZNF106
SNAP23
SYT5
TNFSF14
DDX23
PAFAH2
TMEM79
SMG5
RPTOR
FBXO38
NOC3L
LENG8
DMTF1
CSDE1
COQ5
CSNK1G3
VPS37B
KEAP1
H3C10
TRIM16L
H2BC14
H2AC14
AXL
OTOA
NDUFS7
DDX46
LDAH
DR1
MUL1
ERLEC1
ASB3
PDE12
RASA3
RHBDF1
ZP4
PRDX1
TRMO
GPS2
EXOSC8
ALG5
KLHL20
RNF168
ILF2
TUBB1
PRCC
MRPS15
WBP1
INO80B
ZNF148
CASC3
NFKB2
R3HDM2
INHBC
RUSF1
COPS6
TTC32
ISG20
PRDM5
CT45A7
CT45A6
CT45A9
CT45A8
CT45A5
CT45A2
RBM28
ING4
BRMS1
B4GAT1
TRMT6
MCM8
S100A13
CHTOP
BCAT2
MCRS1
ZNF697
NFIB
TIMM22
WASHC2C
SCRIB
PIGU
DNAJB12
COQ9
CIAPIN1
TAS1R1
NOL9
RAD52
SRSF7
USE1
SLC26A2
H2BC4
H2AC6
CLUH
RFC2
TRMT1
NACC1
VPS28
IFNAR1
HTR5A
TMEM199
POLDIP2
ATXN2L
LRRC29
RPL29
PCBP2
EEF1A1
LRRC59
ARL8B
CNOT2
BCAS4
PGLS
KRT8
NANOS3
BFSP1
KRT18
SLC12A2
H2BC13
H2AC13
FRMD8
SLC25A45
LRRC52
TMPRSS5
SLX1B
SLX1A
BOLA2B
BOLA2
SNRPD1
AAAS
AMACR
PRR19
PAFAH1B3
TESK1
FGFBP3
FOSL1
TMC1
TOMM22
SNX17
EIF2B4
MIA3
HSPA8
LRWD1
ALKBH4
STT3B
TOMM7
TRIM46
PYGB
KRTCAP2
SPRED2
TFB1M
MOB3C
ARHGEF12
FAF1
MPHOSPH10
MCEE
SMIM14
ZNF185
SCO1
ADPRM
LOC112694756
RIN1
CALR3
C19orf44
KCTD5
IPPK
BMS1
CCDC124
ARHGEF7
HSPA9
SASS6
ARID3B
TMEM223
TMEM179B
TP53I3
FOXO3B
ARTN
LOC100509620
UNK
RPS6KB2
STOML2
TAF1B
UQCRC1
LMNA
MFAP3
FAM114A2
RPL7A
MED22
ZSCAN30
C16orf72
MSANTD2
OCEL1
PGAP4
ADORA2B
ABCC3
MRPL4
FAM168A
ATP6V0D1
AGRP
SEC14L1
H2BC7
SCAP
H3C4
H2AC7
ANKRD13D
TRNAU1AP
RPL7
RDH10
MEMO1
ALG14
NT5C
DCAF8
NDUFAB1
SMIM12
WASHC4
ZNF398
ZNF425
TDG
ZNF350
ZNF668
ZNF646
TPK1
TUT7
USP1
MRPS21
C11orf49
FURIN
FAM228B
PMF1-BGLAP
PMF1
SF3B6
NOL11
NUP133
DYM
MAZ
ADAR
SOS1
MNAT1
LRRC49
THAP10
GRB7
IFRD2
SPATC1L
TOB2
STAU1
PSMD6
LDHA
MAD1L1
PUM2
INAVA
DYNLRB2
CAMKK1
DDX27
GPAM
WASHC5
NSMCE2
HIF1AN
EIF3L
ANKRD54
NUCKS1
TMEM126A
PDS5A
DPY30
SH3TC1
RFFL
SPRYD4
MRPL39
TIGD6
HMGXB3
THOC5
RICTOR
TMEM250
MAP2K3
NXF1
LUC7L
COX7C
HIRIP3
C19orf67
STIP1
PURB
AVPI1
COPS4
QTRT1
ZNF696
KXD1
CSTF1
AURKA
TMEM62
ADGRG1
CASZ1
SH3TC2
SMN2
SMN1
GTF2H4
C1orf54
APH1A
YJU2
SYTL2
CATSPERE
PADI3
TSSC4
TEKT2
ADPRS
POLR3D
TSFM
EIF3C
EIF3CL
MRPL11
PNPLA6
PLK2
HIPK1
DBR1
AATF
RPL32
CYB561
CEP350
FAM187A
EFTUD2
CCDC103
RFX1
NR1H3
ACP2
RPL5
MCOLN1
G3BP1
ICE2
CGGBP1
FAM200B
C3orf38
MED12L
SPNS1
C19orf53
GNB2
GINS3
MAML3
DCPS
COX7A2
RPL30
INA
ZC3H6
CYCS
SPRED1
CCDC86
ADK
RPS13
TXNDC15
RAD9A
ATAD3A
GGPS1
ARID4B
RPL38
BABAM1
ATF3
KLHDC10
DNLZ
AGL
MGST3
NUP214
THEM4
THUMPD3
ZNF846
DSN1
C11orf65
OR2L13
OR2AJ1
PSMB4
RANBP6
PEX12
DDX18
SCAF11
HINT3
FCRLA
C1QTNF3
KMT2D
PNKD
AAMP
KPTN
UBR4
SLC35B1
LSM5
AVL9
EXOSC6
SNF8
TPM3
RPL21
JUNB
RBM12
CPNE1
TMEM168
PKIG
BTBD1
SRRM1
ATRN
UTP6
FBXO27
RCOR3
ZNF518A
GET4
DHPS
CCDC107
SRFBP1
CEP78
ALDH1A3
KCNMA1
CLTC
H2BU1
H2AW
FBXW9
MINDY2
FAF2
PFDN4
TRMT10C
BRD2
H2AX
SF3B2
GAL3ST3
NUDT15
GAPVD1
METTL2A
ATAD2B
TEX261
GPATCH4
ITGA3
TRIP6
NUDCD1
TRAF7
SERBP1
TFRC
NOL7
PIGL
NCOR1
BIN3
RAF1
H4C1
H3C1
H1-1
CLPTM1
POLD3
C8orf37
LSM11
CHD2
GATAD2A
SRCAP
LOC730183
DDX50
TRIB1
ZNF410
TM2D3
BRIX1
METAP2
ACBD6
PGAM5
RPL22
SLC35B4
UBA52
ABT1
ILF3
DNAJC25-GNG10
DNAJC25
CUEDC2
MRPL27
EME1
PPP1R15B
RCHY1
EEA1
TCF12
RPLP0