ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX6066504 | HCT 116
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◣ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

DUX4
FRG2C
GSTA4
MTRNR2L1
WDR74
KMT5B
KMT2A
FRG2
ATAD2
FLOT1
IER3
CCDC200
BRWD1
PAFAH2
CLTC
PEMT
DKK1
RCOR3
GOLM2
ZNF276
VPS9D1
RABEP1
RBL1
KMT2D
LYRM1
DCUN1D3
ERRFI1
LRP6
PHIP
RTTN
RPS7
POLDIP3
GTF2H4
ID1
PHLDA1
GFM2
CALM2
WDPCP
MDH1
AREG
MKRN3
CCNI
RAG2
IFTAP
DPY19L4
GPRC5A
SIRT4
STX16
PEAK1
HMG20A
ZKSCAN2
COL23A1
MRPS31
TOR1AIP2
TOR1AIP1
ACSF3
COX16
TSC1
GFI1B
DCP1A
DDIT4
LYNX1-SLURP2
LYNX1
MED23
FOXC2
MTF2
NME1
NDUFS7
ALG10B
UBC
GDF15
TMEM107
CDCA3
NSFL1C
AHCY
H4C3
H1-6
ZNF296
GEMIN7
WDR11
H4C11
TEFM
H1-2
NDUFB3
FAM126B
DCBLD2
STX10
IER2
USP30
EIF4A2
REXO4
ADAMTS13
CTNNB1
ADPRHL1
VPS13B
FAM207A
SMG8
TOP3B
AXL
RPS26
SLC24A1
MRPL39
CLOCK
AURKAIP1
ZFAT
MTBP
MRPL13
ZSCAN22
TRIB1
H4C14
BMS1
H4C15
ITGB3BP
EFCAB7
TNPO3
TRIP12
FBXO36
SAT1
DDX5
CEP95
TOB2
H3C2
H2AC4
H4C2
CLDN4
ACSL5
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
DDX23
IFRD2
H3-3B
HEXIM2
LAMP1
CCNL1
RNF151
ZC3H6
FEM1A
TBL3
DSTYK
UNK
PDE6D
COPS7B
EIF2D
CALR3
C19orf44
TMEM41A
STX18
TIMM21
FBXO15
NCBP2AS2
NCBP2
MRPL21
IGHMBP2
ABCF2-H2BE1
ABCF2
NOTCH2
PPP5D1
CALM3
TSNAXIP1
RANBP10
PPRC1
CHPF2
GSPT1
POLR2J3
TMEM11
SOD2
HMGB1
WTAP
TMEM199
POLDIP2
WDR53
FBXO45
TMEM222
SPATC1L
CALM1
GATB
FOXJ3
CLPB
OPA1
SSNA1
ANAPC2
CCDC88A
TSN
TOMM22
SPNS1
SEC13
MRM3
GLOD4
CYCS
MRTO4
EMC1
SCGB1C2
SCGB1C1
ORMDL3
TCF3
RPL8
COPS8
KBTBD7
NDUFS3
KBTBD4
NMNAT1
LZIC
TIMM22
UBB
CCDC77
NUP214
SMN2
SMN1
ZNF34
BTRC
MAMDC2
CNOT1
TMEM115
DOHH
CFAP410
TRIP4
SLC39A1
C16orf91
POMZP3
ZNF337
SCAF1
RRAS
KPNB1
SYMPK
FOXA3
CHMP4B
ST3GAL2
CTDP1
RPS3
MTERF4
BOD1
AP2S1
IST1
WASHC2C
TSSC4
PSMD3
PEX3
ADAT2
ZBTB45
PRCC
PNKD
UBE2B
CDKL3
RPS20
AHCYL2
AAMP
SNX17
EIF2B4
ING3
TCEA2
CRTC2
HTRA2
DQX1
PA2G4
GTF2H3
EIF2B1
CLEC16A
DEXI
ADPGK
FRA10AC1
CKS2
HEXA
ZNF212
WASHC2A
SMPD3
PEX26
NUF2
NAGPA
THRAP3
KCTD9
CDCA2
MRPL24
KBTBD6
RPL22
ZFAND2A
KDM5A
NUDCD1
TTC13
ARV1
TRIAP1
ZCCHC4
UBE2D3
PPP1R12B
MED15
ZNF721
PIGG
NXF1
PKM
PARL
ATP5MF-PTCD1
ATP5MF
MCM7
AP4M1
RPS6KB2
RPL18A
RPS28
NDUFA7
ATG14
OSCAR
NDUFA3
OAZ3
WDR97
MAF1
USPL1
SLC9A1
H2BC21
H2AC21
H2AC20
MAD2L1BP
SCNM1
LYSMD1
INVS
ERP44
IPO11
TMEM127
CIAO1
KCTD5
MICOS13
HSD11B1L
SCRIB
C8orf33
RPIA
PANK4
HES5
CDC25C
ZNF444
GTPBP2
NPRL2
CYB561D2
ZNF718
NOP14
GRK4
FUS
GPAM
MAIP1
PPP1R12C
DNAJC11
DIP2A
DUS2
DDX28
FAM53C
PHB
FARSA
CALR
TMTC3
CEP290
TRAPPC3
ZW10
C8orf58
TMEM79
SMG5
CCAR2
CYP51A1
TNFAIP1
IFT20
BRIX1
SLC35B4
MAPKAPK5
ZNF595
ZNF384
RANGAP1
ATXN2L
UBR2
ALKBH3
MXD4
RBM42
C1orf159
SRSF11
ZC3H10
RPL41
ADNP
UBQLN1
LRRC29
MRPS15
TBRG4
NUP153
PCID2
CUL4A
ZNF56
BANP
RLF
PSMF1
PGBD4
EMC7
KAT7
CHD2
PEX14
DFFA
COMMD1
PINX1
MFN2
INTS9
HMBOX1
BOD1L1
C19orf53
PSMD11
FBXW11
MRPS35
WBP1
INO80B
CCT4
KDM4B
DNAJA3
UBE2Q1
NKIRAS1
SLC25A19
DCAKD
UBQLN4
LAMTOR2
TAF5
HMGCL
GHITM
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
ZFYVE1
PBLD
HNRNPH3
GID4
ATPAF2
CCDC146
MMACHC
SPRYD4
LRRC40
TMEM70
ELOC
STK25
DPP9
VPS37A
CNOT7
RIC8B
LUC7L
AP2M1
DCAF10
NOC4L
DDX51
NMT1
TTC33
DOLPP1
ENDOV
RPL15
PHF23
GABARAP
CIC
SPTLC1
SP2
MRPL20
SLC33A1
ARHGEF12
ZNF420
MDM4
ZGPAT
ARFRP1
PIGU
ZFYVE19
DNAJC17
AHCTF1
HNRNPAB
ACOX3
NTAN1
COMMD9
FBF1
UCHL5
RO60
TEPSIN
NDUFAF8
TCF12
MRPL58
CSRNP2
EIF3F
RPL29
RCL1
IDH3B
LETM1
CANT1
RBM6
MTMR2
BIRC5
DNAJB12
STAU1
ABRAXAS2
GDE1
CCP110
PHF12
LONP1
CATSPERD
SECISBP2
SUFU
ACTR1A
TFPT
PRPF31
ARF4
RALBP1
TRMT44
SUPV3L1
SNAPC3
HSPA5
SMARCAL1
H2BC5
H1-4
GTF3C5
HSP90AB1
GFUS
HSP90B1
DDX1
SART1
COQ9
CIAPIN1
ZSWIM8
CHCHD1
RPL12
LRSAM1
ZFPL1
CDCA5
UBL7
H2AX
DDX49
COPE
GTF2I
PHF13
RCOR1
MRPS16
SNRNP70
DNM1L
FDPS
JOSD2
ASPDH
PIK3R3
CTU1
ARHGAP9
COG2
ZNF749
DCAF8
MTRNR2L2
MSH3
DHFR
RAB5C
TSC2
NTHL1
WASHC5
SSBP1
NSMCE2
SNX1
CIAO2A
GABPB1
DESI2
TMEM262
BOLA1
DCAF1
U2AF1L5
U2AF1
TRAF7
WAPL
MARS1
TMEM59
TCEANC2
NDUFV1
CAND1
IP6K2
CBWD5
TNFRSF12A
THOC6
HCFC1R1
PNRC1
TRAK2
STRADB
CHCHD3
RWDD1
CRBN
SOX6
C11orf58
ODF3L2
B3GALNT2
TLE3
FBXO46
CBWD3
METTL25
CCDC59
VCPIP1
C8orf44-SGK3
PTEN
KLLN
TTC4
COX7C
SF3A3
SLC7A6OS
PRMT7
PSMD2
MCU
TEKT2
ADPRS
WDR87
SIPA1L3
TRMT61B
SLC3A2
PIK3IP1
SRSF2
MFSD11
SRSF1
SKIV2L
NELFE
THYN1
ACAD8
ZNF500
IPPK
PABPC1
PLEKHM3
BRF2
BICD2
ATF4
PRKACA
RPS19
SERBP1
USP48
METTL9
GUSB
TMEM242
POLG
SMIM13
SIRT2
NFKBIB
MANF
SSR3
TARBP2
MAP3K12
FAM149B1
ECD
ZNF148
SRRD
HPS4
PSMD4
TIMM13
NDUFB5
MRPL47
FAM228B
CCDC90B
H3C13
H2BC18
RPS16
MUS81
CFL1
RUVBL1
UBE3B
KCTD10
NOLC1
GFM1
COQ7
RPLP1
TRUB1
H3C15
H3C14
H2AC19
H2AC18
VIRMA
ASXL1
TMEM217
TBC1D22B
SESN1
CMTR1
TACO1
SPATA25
CTSA
UBA52
NLK
PCBP2
COA6
CAPN10
TFRC
EIF4A1
CDKN2AIPNL
POLR2E
RFXANK
BORCS8-MEF2B
BORCS8
ZC3H3
KDM4A
MYLK4
ZER1
CFAP20
HAGH
FAHD1
COPS7A
RPLP0
NDUFAB1
LARS1
REXO1
EEF2
EEF1A1
NEURL2
CACTIN
SF3B2
GAL3ST3
BUB3
XRRA1
SPCS2
B4GALT7
SRP68
GALR2
KAT8
SPRED1
WBP2
ATRIP
KPTN
BUB1B
PDE4DIP
WNK1
USP15
PARK7
ZNF518A
CLP1
TMEM230
VCP
SLX1B
SLX1A
BOLA2B
WRNIP1
PHB2
FAF1
GTF2H2C_2
GTF2H2C
PPAN-P2RY11
PPAN
ANGPTL6
KMT2B
PTDSS2
CWC25
GPANK1
CBWD6
SLC4A2
CDK5
EMP3
BOLA2
WDR25
WARS1
RNASEH2C
PALB2
DCTN5
ZFYVE28
CSNK2B
HIF1AN
MRPS11
MRPL46
RANBP2
ZNF225
TIGD6
HMGXB3
SNRPD3
GUCD1
C5orf51
POLR3D
TATDN3
NSL1
XPOT
EIF2S2
RPP30
RERE
SUMF1
NABP1
CEP350
MEIOSIN
PTBP1
OAZ1
NOL10
CHCHD6
SEC11C
RPL3
ZNF189
MRPL50
UBN1
GLYR1
CCDC150
NDUFS2
ADAMTS4
SELENOH
LRCH4
FBXO24
PHAX
SEC61A1
RTF2
RPL23A
RAB34
SEPTIN9
SPHK2
RPL18
FBXO28
RAD23A
CDK8
C12orf43
CFAP99
FASTKD1
WDR4
FAM156A
DGAT1
SMIM12
ZNF451
NCDN
KIAA0319L
SUGP1
MAU2
RAB1A
MRPL3
FAM156B
ZNF2
CASC3
PPIA
VPS33A
GET3
SDE2
PEPD
C19orf48
TMEM39A
TMEM69
GPBP1L1
CCDC124
IPO7
ZNF527
COMMD2
PANK3
HIRIP3
RASEF
TOP2B
FAM83E
TOP3A
SMCR8
SFSWAP
H4C12
CNPY2
CLDND1
RPL6
SNAP47
PCNP
CNIH4
JMJD4
GPAA1
EXOSC4
CAPN15
TTBK1
AP5Z1
ZNF805
ZBTB4
SLC35G6
POLR2A
STMN3
RTEL1
MRPL48
CCDC86
MRPS23
UBAC1
AKIRIN2
ABT1
TSFM
FANCD2
RAD54L2
CNOT4
SPRYD3
RPS3A
DDX46
ZNF133
CDK5RAP1
SRPRA
DYRK1B
TBC1D22A
TIMM50
ATP5PO
TOR1A
BOLA2-SMG1P6
ZNF335
SURF6
PKN2
TUBGCP3
EIF2B5
CCNC
GATAD2A
USP42
USP35
KCTD21
FAM133B
MAGOH
SEL1L
RBSN
CTF1
BCL7C
L3MBTL2
LRFN3
TMEM258
FEN1
MRPL44
SCAMP3
DRG2
HBS1L
AARS2
RPLP2
PIDD1
FAM89B
MRPL55
CLCN7
RPTOR
DUS3L
PSME3
HNRNPL
IARS1
CIAO3
INTS1
EIF1
FAM227B
DTWD1
SERP1
EIF2A
SERPINI1
PDCD10
TAS1R1
NOL9
ZNRD2
MTR
DYNC1I2
SLMAP
PPP6C
C6orf89
PDCD4
FBXW2
MON2
ZBTB7B
TMEM160
FAM187A
EIF5
ZC3H11A
ZBED6
PPIL4
RAB5IF
MRPL4
C12orf73
VIPAS39
AHSA1
TFEB
NUS1
MXI1
PSMD8
DNM2
EFTUD2
CCDC103
ACTRT3
RANBP1
C6orf47
TMEM186
PMM2
ECSIT
TVP23B
APTX
UFSP2
C4orf47
TBCB
POLR2I
OVOL3
LTO1
ATG7
ZNF554
GARS1
AJUBA
ARHGEF7
VPS50
HEPACAM2
PCM1
EIF3C
BDP1
SUPT4H1
MIA3
ACAD9
MYLIP
TBCCD1
DNAJB11
VPS4B
POR
TMEM43
CHCHD4
EIF3CL
GTF2H2
TUBGCP6
SRP9
SNRPD1
EIF3D
NFYC
MAEA
AKAP8
ATP6V1G2
STOML2
NOP53
RPGRIP1L
FTO
DVL2
RAD52
FBXO48
APLF
ZSWIM9
LIG1
SH2B1
RFX1
ERLIN2
WDR43
VAPA