ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX2375362 | MV-4-11
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◣ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

NLRP12
FRG2C
NFKB2
CDCA3
LAMP1
GATA4
CMPK2
WDFY3
MTRNR2L1
SPATC1
ABT1
PLSCR1
WDR74
PGK1
STEAP4
OR10J1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
PDLIM2
GSTA4
CALR3
C19orf44
XRCC5
BOD1
NIBAN3
IFRD2
GPAA1
EXOSC4
FEM1A
SCNM1
LYSMD1
H4C11
FRG2
ZNF444
SMPD3
DUX4
KLF2
CTTN
PPIAL4H
PPIAL4G
GSPT1
RPS19
CHMP4B
SEMA4B
H4C12
SLC18A2
RNF149
DCP1A
SPDYE13
SCAF1
RRAS
DMWD
UBXN8
NUDT4B
NUDT4
PEX3
ADAT2
NUDCD1
DCAF12
DYNC2H1
SLC12A6
NOP10
NUTM1
KBTBD6
SORBS3
MICOS13
HSD11B1L
TMEM243
DDX58
NDUFS7
GBA
NBN
MEF2C
FBXW4
CCL26
CYTH4
NBEAL2
ZNF221
EXD1
CHP1
BCL3
MTF2
ZCCHC4
CSF1R
SH3BP2
DNAJC5B
JRK
DPY19L4
PANK4
HES5
PNKD
AAMP
TOR1AIP2
TOR1AIP1
NDFIP2
MED23
PPP1R12C
TSSC4
MTMR9
ARHGEF1
MTIF2
PAFAH2
INTS9
HMBOX1
SIGLEC1
GPBAR1
TMTC3
CEP290
GRPEL2
TSNAXIP1
RANBP10
KBTBD7
APOL6
ZBTB45
H2BU1
H2AW
POMP
TYROBP
ZC3HAV1
PGBD4
EMC7
CLPB
H4C14
H4C15
PEX12
CD1A
ST3GAL2
GTF2H2
GNG2
TRPV4
C1orf159
CYP4V2
JOSD2
ASPDH
SLC1A5
TLR4
TBPL1
RPS20
PRR5
ZNF554
TPRKB
MAPKAPK3
CISH
FBXW11
C8orf58
CCAR2
SLC25A10
IL1B
IL7R
ZC3H6
LRRC37A3
VAV1
ARID5A
PEMT
BANK1
ZNF718
ZNF595
USP3
KMT2B
GLRX
FAM207A
TMEM104
NAT9
CD33
RIPK1
TMBIM4
PPP5D1
CALM3
HPSE2
HSH2D
NUF2
MRPS31
H3C13
H2BC18
SLC39A13
MS4A3
BTRC
DRG2
KANSL3
FER1L5
SYMPK
FOXA3
SF3A3
SSBP2
VCPIP1
C8orf44-SGK3
DOCK8
TMEM115
FRG1
AURKAIP1
TIMM21
FBXO15
FAM227B
DTWD1
ADAM28
MEFV
CTU1
PTK2
FRA10AC1
COL8A2
ICAM1
TMEM91
B9D2
MRPS18C
HELQ
TRDMT1
PLEKHM3
BORCS7
RBCK1
AP2S1
IPPK
SIGLEC9
ZNF76
ODF3L2
RNF220
RAB24
PRELID1
MINDY3
ZSCAN22
CCDC9
PPP6R1
PRKCE
TCEA2
BAZ1A
NR3C1
FLT3
A2M
CES1
ABCF2-H2BE1
ABCF2
CHPF2
HIBCH
OLFML2B
SSBP1
ARPC3
EXOC3L1
E2F4
SLC24A1
LCMT2
ADAL
EXT1
ARHGAP25
UNC45A
HDDC3
TAL1
INO80D
WNT2B
H2BC5
H1-4
MRPL24
ZNF175
TMEM222
SCRIB
CCDC200
THAP1
H4C3
H1-6
SPPL2A
ANKRD40
SPATA24
IPCEF1
LTBR
TMEM68
TGS1
ITGA4
LRRC59
CHMP7
TLE6
DDX23
GHRL
BECN1
GTF2H3
EIF2B1
LARS1
GNB4
CXCL1
MMACHC
POLRMT
PROS1
RPL29
RMDN2
DNAJC10
POLE4
RASA1
DENND4B
ZNF333
ZNF780A
ARID3B
TAF1B
CHCHD5
CBX1
SNX11
VPS13B
DRAP1
C11orf68
GFUS
TMEM11
JMJD1C
MRPL34
DDA1
ABHD8
CEBPD
TOMM22
BNC2
NSMAF
ASGR2
SNX17
EIF2B4
KEAP1
C19orf84
RRM2B
PPRC1
NDUFS3
KBTBD4
SIRT2
NFKBIB
FAM228B
LRFN3
SF3B6
TRIM41
POLR2J3
RNPEP
RPS3
MAPK1IP1L
NEDD9
EIF2D
ZNF148
ZC3H3
MRPL30
MITD1
ANXA2R
APPL2
FUT10
ANKRD18B
ITGB2
NSFL1C
H1-2
SLTM
ZFAT
XCR1
RUBCNL
INVS
ERP44
ELOB
ZFP64
KASH5
H4C4
H2BC6
BRF2
RMND1
ARMT1
ADGRE1
RPS15
CCPG1
C15orf65
DR1
ALDOA
ZNF180
ATP5MPL
INO80C
RAC2
GNA11
TMEM39A
POGLUT1
SAT1
MRPS28
TNFAIP1
IFT20
FBXL19
MAPKBP1
TTC33
COX18
DNAJC11
PSMF1
INTS12
GSTCD
LTB4R
CIDEB
LTB4R2
PEAK3
PPIAL4F
PPIAL4E
PPIAL4D
OPA1
ZNF286A
ZNF410
RGS12
FOLR2
HMGB1
USPL1
UCHL5
RO60
FLOT1
IER3
SNUPN
TIMM10
SMC6
GEN1
CD1C
LILRA2
AARS2
SIRT6
ANKRD24
ADAP1
MOB4
EFCAB2
CHD1L
PRKAB2
NOTCH2
LMO2
PHB
ZFYVE1
RPL27
NTAN1
ZNF749
GTF3C6
FNTA
SEC14L1
DPY19L3
RHOT2
CLDND1
RPL5
SLC44A1
TSC1
GFI1B
FBXW7
NCBP3
WDR55
CYRIB
ZAR1L
BRCA2
PRKD2
REXO1
DSCC1
TMEM242
C6orf89
ZNF350
RALB
ASNSD1
ASDURF
GPR68
PSMA8
ADGB
RPS6KA1
TBL2
RASSF2
CTSG
WDR87
SIPA1L3
TMEM229B
TP53I11
POR
AP3M2
TRIM25
CNN1
HIF1AN
RAD23A
HNRNPUL1
PIP4K2B
RBM28
SPRED2
NPY4R
NPY4R2
CCDC124
CFAP298-TCP10L
CFAP298
ACTRT3
TRIM44
NDUFB7
TSSK6
NDUFA13
INTS10
SDSL
ZNF225
ARHGEF18
PCM1
KMT2A
RPP38
ENOSF1
RFESD
REX1BD
AP1B1
DNAJB2
CEACAM21
RNF125
FZD1
RASSF5
AP2B1
REEP3
ERMARD
TMEM123
LRRC29
TSC2
NTHL1
C19orf67
VSIR
MRPL44
SNRNP200
DHX8
OBI1
H3C8
H2BC10
HCK
ARMH3
KCNK9
PA2G4
COPS7A
PRRG2
NOSIP
SIRT1
RUNX1
BLOC1S5
SDHAF3
TRAM1
YES1
CCER2
PNPLA6
POLR3B
RSU1
C1orf53
PIK3CG
TSG101
SLC35E2A
SGF29
TFPT
PRPF31
NCLN
MARCHF7
RSAD1
EDDM13
SLC33A1
PARK7
DGAT1
DCLRE1B
AP4B1
ERICH4
DMAC2
ANKRD46
KCTD18
SMPD1
PPP2R2B
CCDC152
HEXIM2
NOTCH1
LTB
H3C7
H2BC9
H4C7
PLEKHG3
LST1
UBIAD1
RRS1
ADHFE1
PPP1R18
NFE2
BRWD1
PGBD2
HMOX1
RPIA
RCOR3
SLC4A2
CDK5
EMP3
TEFM
NUP54
RAB4B
MIA
CCDC114
SVBP
ERMAP
BID
ECSIT
EXOSC3
HINT3
ZNF557
NFKBIA
MTRNR2L6
H3-3B
UNK
RPS7
CCDC97
ZNF226
LRG1
INPP5D
MDM4
TRAK2
STRADB
GTF2A2
AHCYL2
TSPAN10
NPLOC4
UTP3
ZSCAN30
TRIB1
MRPS23
ATXN2
PSMA1
CAPN15
PISD
H4C1
H3C1
H1-1
H1-5
H2AC16
TRIP4
HSPE1-MOB4
HSPE1
HSPD1
WASHC4
TXNDC15
CIPC
PRICKLE4
FRS3
RMDN1
LSM14A
MYC
CRH
CPQ
SYNE3
DSTYK
PPP1R12B
H4C9
WDR41
MAP1S
GARS1
MCOLN1
RFC2
TEX22
CLPP
MACROH2A1
SNRPB
FKBP1A
PEX2
DISC1
STON2
MAIP1
MRPL3
RAD54L2
THOC3
ZNF227
NEUROG3
SLC39A1
CRTC2
CCDC150
RBM17
LYNX1-SLURP2
LYNX1
HENMT1
THEM4
BIRC2
HIGD2B
BBS4
EEF2
POLR2M
MRPL1
PTK2B
TRIM35
MYO18A
GAS6
CCDC88A
C8orf33
LONP1
CATSPERD
CDKN2AIPNL
GTF2H2C_2
GTF2H2C
POLR3D
HUS1
ANKRD13D
PDE6D
COPS7B
SEC13
SCGB1C2
SCGB1C1
ZNF235
MRPL16
PPIL2
ZNF623
ZNF558
RYK
EIF4G3
C16orf91
STOML1
PML
SUN1
FIGNL2
PIK3AP1
APBB1IP
STING1
H2BC21
H2AC21
H2AC20
SLC35B4
MAK16
FEM1B
TLN1
CREB3
DHRS7B
H3C3
H2BC3
GSK3A
CAPNS1
MRPL21
IGHMBP2
CTDP1
GABPB1
SOX6
C11orf58
MAN2C1
MED4
PLD3
C19orf47
B3GAT3
SCAMP1
OLFML3
CAPG
PDSS1
SYCE2
PRCC
METTL25
CCDC59
CCND3
EMILIN1
YARS1
S100PBP
CLK3
POGLUT3
ARHGDIB
NCF2
IRF9
IL1RN
CDK5RAP1
C10orf88
AVEN
SERPINE1
SIGLEC6
BRIX1
TMEM70
ELOC
USP15
FAM3C
SMAD5
QSER1
PECAM1
STK25
POLG
NINJ2
TNFRSF10A
ZNF512
ATG16L1
H2BC11
H2AC11
ZNF331
MFSD3
GPT
UPF1
SPHK2
RPL18
FAM83E
LUC7L2
FMC1-LUC7L2
FMC1
TATDN1
NDUFB9
GABPB2
IQGAP2
BSG
TEX44
TIMM50
ERLIN2
UBLCP1
FRAT1
NME7
BLZF1
CRBN
REXO4
ADAMTS13
RAD52
RCBTB2
JAK3
ZNF56
PPP1R8
VKORC1
STAT1
AQR
PSMD9
HPD
DCLRE1C
MEIG1
ELAC1
TCF3
POMZP3
ZFYVE19
DNAJC17
RUVBL1
EEFSEC
DDX18
SLC25A32
DCAF13
RPL37A
STPG3
NELFB
CA13
CAMKK1
LCE3A
SUPT4H1
MRPL38
RNF151
TBL3
VIRMA
TACO1
SH2B1
TUFM
WDR70
S100A13
CHTOP
ZKSCAN8
NDRG1
H3C11
TNNI2
B4GALT7
FASTKD1
TMEM147
RNF6
STYK1
KMT2D
MRPS35
UBA52
SELENOH
VPS16
PCED1A
CAB39
TARS3
RPRD2
STAB1
RPL8
ZNF34
TCF12
PPP1R11
TRIM28
ALOX5AP
TMEM41A
USE1
RNPS1
ATXN7L2
TTC14
TRMT1
NACC1
TM6SF1
UBR2
PSMD11
SNAP47
JMJD4
RAD50
THAP12
GVQW3
SELENOT
ACTR3
REPS1
ORMDL3
IPO11
TRMO
CCNT1
SMARCD2
DST
BEND6
WDR82
ARHGAP4
ASPHD2
RIC8B
DDX1
EIF1B
GFM2
KLHL20
ADAR
MTPN
LUZP6
SMIM20
IRF2
INSC
RPS16
RANBP1
ZSWIM9
LIG1
TRMT2A
PARP2
LSG1
ORC2
MRPS33
PSMB7
EIF3G
UBA2
FADS2
FADS1
RAB39A
WASHC5
NSMCE2
C5orf51
RPS3A
SNRPD1
ZNF567
SFT2D3
MFSD10
CARD8
STOM
MRPS15
BICD2
VPS50
HEPACAM2
EVPL
UHRF2
TNIP2
STX3
CCR1
P2RY14
NCBP2AS2
NCBP2
SEC11C
TVP23B
TERF2
RAVER1
CNTRL
UBE2F
NREP
EMB
NCF1
NPRL2
CYB561D2
ZMYND10
ZNF594
TRIM13
MTBP
MRPL13
KMT2C
STAP1
CCDC90B
MMAA
TOR1B
SUGCT
MPLKIP
MYO9B
HAUS8
CCR5
CBWD5
CBWD3
PTEN
KLLN
FAM89B
ZNRD2
IDNK
HDDC2
CATSPERG
CGAS
RBIS
MLNR
EHBP1L1
C17orf75
ZNF101
ATP13A1
EXOSC9
TCF4
ERMP1
CCDC149
IL16
DNAJB12
TEKT2
ADPRS
GOLGA3
LDAH
IPO4
RPL26L1
CSPP1
COPS5
ZC3H4
CELF1
FGGY
KAZALD1
PPM1M
CLEC4G
COPS8
RPS8
PRR19
PAFAH1B3
TSN
COMMD1
CCT4
RALBP1
SAR1B
SUGT1
ZCWPW2
AZI2
MEMO1
TARBP2
MAP3K12
ZNF2
RARS1
PRKCSH
CCDC151
LMBR1