ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX20230569 | Ishikawa
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◣ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

CTNNB1
MTF2
TSC1
GFI1B
CKS2
LRP6
GATB
NAGPA
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
ATAD2
CALM2
SOD2
WTAP
IP6K2
BRWD1
KCTD9
CDCA2
HEXA
KMT2D
KDM4A
PPP5D1
CALM3
CLTC
CCDC88A
ZC3H6
CCNI
WASHC2A
KPNB1
VCP
CCDC77
KDM5A
PPWD1
CENPK
CYP51A1
CCNL1
NXF1
PDCD4
SAP30BP
RECQL5
WASHC2C
TCF3
CFAP20
KMT5B
NOTCH2
CALM1
CNOT1
SCGB1C2
SCGB1C1
ARHGEF12
ATG14
ARRDC4
DDX23
TOP2B
ZKSCAN2
LAMP1
RPS26
IPO11
SESN3
CCNG2
OGT
DDIT4
GSTA4
TMEM199
POLDIP2
SPRED1
STX18
HEXIM2
UBC
SPNS1
DOLPP1
RBL1
CHD2
PBLD
HNRNPH3
PIK3R3
TMEM41A
PHIP
POLR2J3
MCU
CYCS
RCOR1
UBE2D3
TRIP4
IDH3B
MRM3
GLOD4
RBM42
TCF12
UBB
TAF5
COMMD9
AJUBA
IST1
GRHL2
SPATC1L
OPA1
ZNF518A
METTL25
CCDC59
TRIP12
FBXO36
WDR53
FBXO45
DYRK1B
SLC9A1
DIP2A
TRIAP1
TRMO
HMGB1
USPL1
AP1G1
ARNTL
WASHC5
NSMCE2
SENP2
GABPB1
GTF3C5
TMEM242
METTL1
EEF1AKMT3
CYP27B1
NCBP2AS2
NCBP2
TOMM22
RPLP1
ATF4
ERAL1
TYK2
ZNF124
ATXN2L
NLK
ENDOV
PAFAH2
VIRMA
HAGH
FAHD1
MEF2A
RFX5
FOXJ3
SPATA25
CTSA
NEURL2
MRPL21
IGHMBP2
EIF2D
GPAM
MED23
RDH5
ITGA7
BLOC1S1
ABCF2-H2BE1
ABCF2
CHPF2
PDE6D
COPS7B
HMGCL
MRPL39
GTF2H3
EIF2B1
PEX3
ADAT2
TIMM22
TET3
MRTO4
EMC1
UBE2B
CDKL3
SRSF7
FUS
MCM7
AP4M1
NDUFS7
SLC3A2
VPS33A
SHBG
FXR2
MRPS35
UBE3B
KCTD10
MTMR2
FAM204A
BORCS7
MAPKAPK5
ALKBH3
MXD4
TROAP
ABT1
ZNF335
NUP214
ING3
JPT1
C5orf51
TOB2
PRKACA
TMEM222
HNRNPAB
PINX1
MAGOHB
SPTLC1
H2AX
HOXD8
SUPV3L1
POMZP3
PRDX1
TBCCD1
DNAJB11
ZSWIM6
RPUSD4
FAM118B
DUS2
DDX28
ZNF383
CWC25
FEM1A
RCL1
ZCCHC4
SFSWAP
DOHH
FAM149B1
ECD
FAF1
COPS8
RPL22L1
UBQLN1
PLK2
NMNAT1
LZIC
PI4K2A
SMN2
SMN1
SNRNP70
HBS1L
ZNF212
TIMM21
FBXO15
MAIP1
SPRYD4
GSTO2
RAP2A
TSFM
HIF1AN
GPATCH3
WDPCP
MDH1
COQ7
RNF103-CHMP3
RMND5A
RTTN
POLR3F
DZANK1
ACTL6A
PSTK
RPLP0
TOP3A
SMCR8
PNKP
NDUFS3
KBTBD4
DNAJB12
ITGB3BP
EFCAB7
GOT1
MARCHF9
CDK4
ZFAT
ARL6IP1
PKM
TFRC
G3BP1
MAGOH
MSMO1
STX16
FRA10AC1
CCDC86
CBWD5
CBWD3
CBWD6
MRPL48
NDUFA9
AKAP3
PGBD4
EMC7
USP30
HOXD9
GHITM
TRMT61B
ZNF540
ZNF571
EIF4A2
RPS3
P4HB
ATP5MF-PTCD1
ATP5MF
PFKM
SENP1
HSPA5
TMEM217
TBC1D22B
KAT5
ZSWIM8
CHCHD1
C12orf73
TOM1L2
DRC3
BRIP1
SSNA1
ANAPC2
RPS28
NDUFA7
ATP5F1B
SLC7A6OS
PRMT7
COMMD4
CCNC
SP2
SNRPD3
GUCD1
SPRYD3
SEC13
TAOK2
CSRNP2
PEPD
SRSF1
RBM48
PEX1
WDR25
WARS1
PAN2
IL23A
AP3M2
TFCP2
IER5
RPP30
SF3B5
C2orf49
SLC25A53
DNTTIP2
VPS36
CKAP2
PIK3IP1
PHF5A
ACO2
ATP6V1G1
RANBP6
MED4
TSN
C12orf43
DCP1A
NDUFB5
MRPL47
BAGE5
BAGE4
BAGE3
BAGE
RLF
MTERF4
VPS37A
CNOT7
TFPT
PRPF31
MYLIP
APLP2
TSR1
SGSM2
DNAJC9
SRSF11
LRRC40
DDX5
CEP95
TBRG4
PNRC1
CHMP1B
MIS18A
GOSR1
SNRPC
SECISBP2
POLR1F
ZC3H10
RPL41
FRG2C
GTF3C3
PPP1R8
CDCA3
MFN2
KDM4B
RPS12
GPR84
RNF151
TBL3
DSTYK
GTF2I
DGLUCY
RPS6KA5
RAB11A
SNAPC5
AP5Z1
UBN1
GLYR1
ZNF8
MRPL58
ISY1-RAB43
ISY1
TACO1
PSME3
POLR3D
ZNF2
ID2
TMEM230
HSP90B1
ARL15
HERPUD1
DDX46
PPIL4
U2SURP
ZFYVE26
RAD51B
SUMF1
SEC62
RANBP2
TBC1D22A
UMPS
WDR11
RWDD1
MIA3
SON
GART
PCID2
CUL4A
TSPYL2
C19orf48
ELAVL2
PARPBP
NUP37
ATP8B1
SCFD1
RAB5B
AFF1
VAMP1
COQ9
CIAPIN1
ZSWIM7
TTC19
RPS9
RBM19
ATG9B
ABCB8
MMUT
CENPQ
PLEKHM3
PRKAG1
PTCD3
POLR1A
PPIA
GATAD2A
KDM6B
KHSRP
C8orf33
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
ATG7
GIPC1
BRIX1
RPL12
LRSAM1
TULP3
SPRING1
RNFT2
HAUS5
ARFGAP2
ZBTB4
SLC35G6
POLR2A
DNAJC19
TFIP11
TSR2
MRPS16
USP42
ZFAND4
FEM1C
MRPL45
LMTK2
SETD3
CCNK
TMBIM6
BRF2
KDM5C
LDAH
ZNF143
CASC3
PISD
FAM98B
LRCH4
FBXO24
RBM14-RBM4
RBM14
KDM2A
RBBP8NL
ADPGK
AZIN1
ZNF721
PIGG
COQ10A
RPL22
MDM4
DCAKD
NMT1
ZNF839
APTX
DNAJA1
NECAP1
MRPS11
MRPL46
CDS1
PELP1
RPL3
XRRA1
SPCS2
VPS11
GTPBP10
SRSF2
MFSD11
RASEF
AARS2
MRPL27
EME1
L3MBTL2
RHOB
NUP54
H2BC21
H2AC21
H2AC20
TEPSIN
NDUFAF8
CIC
GFM1
ACAD9
EIF4B
HOMER1
OAZ3
PPT1
SLC30A6
ACOX3
TRMT44
HSP90AB1
VAC14
BMS1
MAML3
GINS1
ZFAND2A
SRPRA
HMGCR
CTDP1
NOLC1
FANCD2
DIABLO
ATP5IF1
SF3A3
ZNF17
ZCCHC3
ADK
RPL5
RAD51AP1
C12orf4
NOL10
C9orf85
ABHD17B
CCDC97
COA6
BRAP
ACAD10
ZFPL1
CDCA5
TMEM262
KCTD5
PNRC2
SLC26A2
POLG2
TMEM39A
KDM4D
CWC15
FDPS
SLC24A1
FAM133B
NUP42
SLC25A19
NABP1
IARS1
TBC1D19
VCPKMT
NRDE2
RERE
LAS1L
CDC25C
FAM53C
TJAP1
H3-3B
UNK
EIF1
ATRIP
LMAN2
ALG10
NUP133
CCNH
MVD
CRBN
PSMD3
KLHL12
LANCL2
MARCHF8
NAT10
AAAS
PARL
NDUFV1
KRT80
YWHAQ
DHDDS
ATP9B
RARS2
ORC3
LRRC29
CLDN9
RFXANK
BORCS8-MEF2B
BORCS8
SRSF6
TANK
KAT7
TOMM40
TMEM126A
SKP1
UBR4
OXNAD1
DPH3
ERICH4
DMAC2
RBSN
UGP2
CSKMT
C11orf98
TMEM94
HNRNPL
TMEM238
RPL28
MRPL37
CYB5RL
SLIRP
ALKBH1
H3C2
H2AC4
H4C2
DDX41
IL4I1
NUP62
ATF5
UHMK1
MRPL55
ZNF56
DR1
RPL13A
SLC25A26
CRLS1
YPEL2
TDG
COPZ1
COMMD2
CALR3
C19orf44
NUFIP2
TSNAXIP1
RANBP10
SLC25A3
CHCHD6
TIMM17A
TRAPPC8
ATF3
PPFIBP1
DDX50
PTEN
KLLN
TTC13
ARV1
MNAT1
ANKFY1
MRPS22
PSMB7
ALG1
FREM2
CLTCL1
CCT2
WDHD1
SOCS4
ZNF444
RPTOR
SRRD
HPS4
RETSAT
ELMOD3
MTMR4
TAF6
CNPY4
PALB2
DCTN5
PCDH9
ATR
NUP107
NUF2
ADNP
MAP3K13
DDAH1
CCN1
MANF
EIF4A1
SAP18
ZWINT
EIF4A3
PEX26
RCOR3
TBC1D23
FBXO28
PTP4A1
INTS9
HMBOX1
THOC1
ATP6V1C1
HTRA2
DQX1
LEMD3
SACM1L
SKA2
PRR11
POLG
PACSIN2
BCAR3
IFRD2
IMPDH2
UBALD2
PA2G4
RBM28
SCAF11
CHD4
COX10
ZNF574
HDAC4
DNM1L
TMEM128
DCAF10
H2BC5
H1-4
TDRKH
TIMM23
GID4
ATPAF2
ARF4
MIS12
DERL2
TRA2B
RAD52
ARL14EP
TEFM
TPR
ODR4
LARS2
SEL1L
SMPD4
MZT2B
MFSD1
GSPT1
HGS
ARL16
SRP9
SPTY2D1
FAM156A
FAM156B
METAP2
CBX5
HNRNPA1
ASF1B
POLR1H
BRMS1
B4GAT1
PTPN6
C12orf57
HMGCS1
CAT
MRPS15
PTPN4
RPS2
NOL11
GADD45G
METTL9
MRPS31
ERCC5
DCAF8
GMFB
MAN1A2
SCAMP3
NARF
NBPF1
PANK2
TMEM254
DCP1B
NDUFA12
C16orf91
NME1
MTHFD2
FARSA
CALR
BTG1
TRUB1
SLC25A42
TIMM50
HMBS
TNKS
KANSL2
ELOVL5
YEATS4
SMIM13
HSD17B12
ACSL3
TOX4
RAB2B
MRPL44
TCERG1
EIF5
RRBP1
OTUD5
ZBTB45
NUS1
FAM76B
CEP57
AASDH
FAM126A
USP15
EPG5
MXI1
PPP1R10
MRPS18B
AAR2
TMPO
CREBL2
NSRP1
TRIP11
LGMN
KDM5B
RTN4IP1
QRSL1
ASH2L
TTC4
HUS1
COL23A1
THUMPD1
F11R
PKN2
XPO1
PHF1
ADAT1
RAD18
RAB4B
MIA
ADARB1
COMMD1
CCT4
TCAIM
NDUFC2-KCTD14
NDUFC2
C6orf226
MPV17L2
LTO1
VDAC2
ERMARD
GTF2H2C_2
GTF2H2C
GOLGA3
ELF2
EEF2
TNPO1
THRAP3
DCAF1
SKIV2L
NELFE
ANKRD17
FAM227B
DTWD1
SARAF
MARK3
ATG16L1
CCDC130
PNP
MRPS23
DDX19A
ATP5MC2
RPS20
ABRAXAS2
SSU72
PSMD7
SLC35B1
ELAC2
VCL
NCAPH2
LMF2
SLC2A1
SH3GL2
TUFT1
SNAPC3
GET3
NOP58
YIPF6
STARD4
PHKG2
MCCC1
SDHB
PDCD6IP
TTI2
NRAS
SLC30A1
DDX47
INTS6
BOD1L1
RPS16
VPS4B
EEF1AKNMT
HOMEZ
MDP1
CHMP4A
PRTG
CDH1
OAT
ATP6V0D1
AGRP
EXT1
MAPKBP1
CNIH3
HSPE1-MOB4
HSPE1
HSPD1
METTL17
MAGEA6
EEF1E1
FDFT1
CWF19L1
NCL
PCBP2
SRSF3
AMOTL2
MAML1
ZNF337
SLC33A1
PMPCA
ENTR1
ZSCAN22
TAF15
HPS5
GTF2H1
RBX1
POGZ
ZNF687
DYNLL1
PCNA
TRIM26
UBIAD1
CCDC43
EXOSC8
ALG5
TMEM256
NLGN2
RPL11
AARSD1
EIF3D
TFB2M
CNST
SNRNP200
NDUFB6
UTP15
ANKRA2
TPRN
TMEM203
NDOR1
SMIM10L1
PRH1-TAS2R14
PRH1
TIMM23B
PARG
RANBP3
MYH7B
GSS
STOML2
DDX1
SSR3
TIMM44
WDR4
MRPL3
OSBP
TMEM170A
PPP4R3A
TFDP2
EDRF1
HDAC6