ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX014770 | NB-4
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◣ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

HMGCS1
MTRNR2L8
MSMO1
MTRNR2L2
FDPS
MXI1
FDFT1
SREBF2
MVK
ARAP1
HMGCR
UNK
ACSS2
HSD17B7
RPL22
OGA
CYTH2
TMTC3
CEP290
CHCHD3
VCP
GHDC
DLG2
TMEM126B
TSNAXIP1
RANBP10
PPME1
C2CD3
PSMD3
STARD3NL
ZNF335
RABL2B
RABL2A
PSMD1
MAPKAPK5
NME6
RWDD1
CACTIN
POLR3F
DZANK1
IPO13
SUDS3
NUP85
DYNC1LI2
VDAC2
EFTUD2
CCDC103
PSMG2
CEP76
HSPA9
NVL
VTI1B
NUP205
POLR2E
RPL21
GOSR2
TBCK
AIMP1
MRPS7
GGA3
NCLN
DCTN1
EXOSC5
BCKDHA
ATP5MG
C19orf48
STAM2
HADHB
HADHA
REXO1
SRD5A1
STAM
BLCAP
SKP1
FARSB
TSNAX
SEC61B
ALG2
LYRM4
FARS2
SLC35B1
UPF2
TSN
PES1
IRGQ
NDUFA4
ZNF576
RBKS
BABAM2
ACTR10
PNO1
PAK1IP1
C6orf52
CAPRIN1
RBBP5
PSMD12
DPH6
COX7A2L
TTC8
ISCU
SUPV3L1
IQCG
GOLGA5
TMED1
RPS23
ATP6AP1L
VARS1
RPL35A
ZRANB2
PI4KB
MRPS5
SART3
SMC2
ANAPC7
PDAP1
BUD31
EIF4ENIF1
ADK
PCBP1
USP1
SELENOF
HS2ST1
C17orf80
AP3M1
ICE1
FAM104A
UFM1
RPS12
NEUROG2
RABGGTB
SF3B3
COG4
PROSER1
NHLRC3
XPNPEP3
ST13
ZGPAT
ARFRP1
RPS27A
CLHC1
BAG6
OSGEP
APEX1
TM9SF1
COMMD1
PAF1
CCT4
NEUROG3
RPS29
HES1
PDE12
DDX39B
PTGES2
UBE2I
RARB
LRR1
SKIL
PIN4
NDUFA10
SPATC1L
VEZT
FGD6
ARHGAP11A-SCG5
ARHGAP11A
MRTO4
EMC1
SUCLG1
TAF9
RAD17
AK6
FLOT1
SP2
PMAIP1
HOXA4
NDUFS7
STK36
RNF25
NEUROG1
OAZ3
MRPL9
ATOH1
EIF2S3
RPL7
RDH10
SH2B1
SEC11C
DHRS3
BICRA
KAT6B
GADD45GIP1
BNIP3
BBS9
GPR108
IGFBP2
RARA
TTI2
NEURL2
CTSA
CNPY2
WDR74
GTF3C4
DDX31
HOXA2
DNM2
ZNF746
TPRA1
CDC73
ID2
PCBD2
P4HB
TEPSIN
NDUFAF8
PDHX
APIP
MINDY2
RPN1
NPAS4
C16orf91
CCNDBP1
TBX2
GLT8D1
CLGN
ZNF383
RAB5B
GORAB
KANSL3
STX18
ZFHX3
DONSON
DOLPP1
CAMTA1
ANKLE2
PDHB
SP5
ATF6
TLE4
ANK2
OTUD7B
UPF3A
RBPJ
KATNB1
MRPL38
FRA10AC1
ZNF687
PGK1
HUS1
RFX1
XKR7
PRUNE2
DUSP6
MTMR4
GATA4
FOXP1
PANK2
NRL
DPP9
CCDC174
TBX3
ALKBH7
CNOT2
ANKHD1-EIF4EBP3
ANKHD1
MRPS31
KIF21B
ARRDC4
ST18
PDE4D
NFKBIA
SMARCD2
TLE2
HOXA3
ALKBH5
IQSEC3
RMND5A
DCAF11
SP1
NR2F1
RARG
PCNA
OSBP
PPCDC
ZFHX4
MRPL34
INSM1
STIP1
RNF207
SOD2
ATP5F1B
SLC45A4
MDM2
ZNF608
POLDIP3
LPCAT3
KMT5A
KAZALD1
MACROH2A1
GPCPD1
MALRD1
SMIM20
CRLS1
EVI5L
GRSF1
EIF2AK3
CBFA2T2
HNRNPD
PPP6R3
METTL11B
GADD45G
ARSG
TMEM70
KCNAB2
KNL1
DAGLB
SHF
QPRT
MYRIP
ANKRD28
FBXO31
SACM1L
SMG6
PRMT5
POLG
RBBP7
EIF3D
SLC30A4
DIABLO
HEXIM2
SREBF1
NLK
RAB37
COX5A
ZNF503
RHBDD1
RTN4
SERPINE1
CEP41
SERPINB1
TNFRSF19
NKD1
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
RUNX1T1
ARHGEF10L
NCOA2
MTF2
G3BP1
AXDND1
EFEMP2
CDS2
HNMT
USP42
ARID4A
DUSP9
ILF2
PNKD
TDRKH
HTR5A
AIFM2
TRIB1
SEC14L1
HIBADH
WTAP
LUC7L2
PRKACA
ARHGAP4
MBD2
KMT2A
ROGDI
NRSN2
HMGB1
NR2C1
KDM3A
BFSP1
TOP2A
ID1
TCTEX1D4
BTBD19
TIGD1
EIF4E2
CPSF4L
CBX3
IQGAP2
RNF149
NEDD9
SH3BP2
IRF9
PIKFYVE
FAM107B
ING1
GOT1
RPS10-NUDT3
RPS10
TBL1X
HSPA1B
INAFM2
RASSF2
LRCH4
FBXO24
EIF1B
HES3
BHLHE40
CCDC88A
TUBGCP3
ANKS4B
NANP
B4GAT1
ZNF76
CYB5R4
LCK
ACYP1
MAF1
SCAP
ADM
CMSS1
GFOD1
EPM2A
PRDM10
EXOSC4
STX16
CASC3
TSPAN4
TUBB4B
SRSF11
HPCAL1
LBX2
FAAP24
CEP89
POLR3E
ICAM1
PCTP
PARK7
PRDM12
ANP32E
DLC1
DCAF7
CELSR3
MPND
ADAP1
USPL1
NEO1
HSP90B1
ZC2HC1C
HOXB4
CS
LTBR
TMEM60
PHTF2
UBE2C
SRCAP
LOC730183
GPATCH8
IRS1
LRRC40
MFSD11
HNRNPC
TANK
SEPTIN9
TRAF4
ATP23
MPV17L2
SLC25A19
CDC42EP3
CBX5
TXNDC11
ABHD2
ARNTL
SHB
CLK1
CLCN3
CCDC59
MVD
SPCS1
CYCS
LPIN1
ZNF148
HECTD4
ZCCHC3
SNX3
NCBP2AS2
NCBP2
MTRF1L
YARS1
S100PBP
HOXC5
LRRC59
CCDC107
DNAJB1
POLR2J3
KIAA0319L
TMPPE
GLB1
HNRNPUL1
SERPINB9
ZNF740
CSAD
TCERG1
GGT1
ARIH2
CALM2
KPNB1
FMC1-LUC7L2
FMC1
PEX14
CSRNP1
NKIRAS1
C8orf37
GLRX5
NFE2
ARHGAP24
FILIP1L
KHSRP
NAT8
WBP1L
BAZ1B
JUP
FAM227B
DTWD1
STARD4
NRSN1
H4C12
LIN28A
GATD3B
GATD3A
CIC
TMEM94
ETV4
MYADM
DSCAML1
NBPF1
ATXN1L
ELOVL6
RSRC1
NCOA7
FBXO41
CCNL1
POLR3A
PRR14
RAI14
CCPG1
C15orf65
VOPP1
LAPTM5
NELFA
RAB11A
MBD6
ARID5A
DCP1A
NUF2
PXMP4
CEBPE
KAT7
ZNF219
SLX1B
SLX1A
FASTKD1
BOLA2B
SKIV2L
NELFE
PKN2
DYNLT1
PSMD9
HPD
HINT2
TOMM40
LNPEP
MEF2C
USP3
ACTL6A
TMEM9
SPIN1
L1CAM
RGS12
SLC7A5
MANF
HOXC6
TRIP4
HEBP2
MRPL4
HBP1
RASSF5
LONRF3
SKA2
PRR11
C3
OTUD4
CDCA7L
GFRA3
REC8
SRSF2
GLRA1
HMGN4
MFSD6
LZTFL1
TMEM86A
YTHDF2
SLCO4C1
ADAM17
GTF2H2C_2
GSTA4
BRWD1
EEF1AKNMT
TOP2B
PKDCC
TRIM44
HSPA5
AK2
TBRG4
RBM15
BOLA2
BHLHA15
RAD50
LOC100289561
HOXC4
ARMC1
HNRNPL
AP3M2
CNPY3
PGP
C16orf54
CLDN2
LDLR
RPS6KA1
MAP11
MFN2
KDM1A
NR1D2
PEX3
CPLX2
ADAT2
STK38
AOPEP
NBN
TIGD2
OPA1
PSMF1
CABIN1
C1RL
BAIAP2
H6PD
DYNLL1
STT3A
IARS1
ERRFI1
C11orf24
PXYLP1
PTGES3
CYBA
TXNRD1
DIAPH1
YIF1A
BRD2
SPSB3
PARL
H4C8
TCF4
KEAP1
SNRPF
NCDN
POR
H2AZ2
ZNF292
SPECC1
KMT5C
BOLA2-SMG1P6
BIN2
USP15
IQCH
AAGAB
AKIRIN1
KIAA0319
RPS6KB2
IBTK
PWWP2A
GTF2H2
RFESD
GBE1
SLC11A2
CYP1A1
RNASEH1
PKM
KAT6A
ZBTB45
E2F3
SERTAD2
ADRM1
NADK
NBEAL2
MAPKAPK3
CISH
PARP2
HNRNPA2B1
TBC1D8
TMCO6
ADGRG3
DENND4B
SEMA5B
MFSD8
ITFG2
ABHD18
AKAP1
MED9
CDKN2D
MTHFD1L
CEP70
TLE3
PIWIL2
VIRMA
TMBIM6
GRHL3
TMEM259
SH3TC1
SEPTIN2
HDLBP
ACAT2
WDR25
WARS1
TMEM222
DIAPH3
LEKR1
ELF1
CNOT1
SPAG7
NIBAN2
ZNF77
AGT
GTF2H2C
ZFYVE21
XRCC3
HESX1
PIK3AP1
DZIP3
CIP2A
MTHFR
WNT10B
PTP4A2
CD38
TOM1L2
DRC3
STAT3
SLC35E2A
PLIN2
GRWD1
SRPRA
UGT2A3
NFE2L1
FGFRL1
MAP3K3
TMEM217
TBC1D22B
C12orf65
LFNG
IDH1
FGR
MED23
RPS8
CMTR1
RNF139
GFER
MTMR12
HNRNPA1
TRMT6
MCM8
CPVL
BCAR3
H4C3
TMX2
MED19
PEX2
TLN1
SIRT4
CREB3
KLF17
TRIAP1
FLAD1
MIA2
FGA
OTX1
SLC24A1
SERPINB6
INTS14
CX3CL1
STMN3
RNF34
H2AX
MSANTD4
H4C15
H4C14
DDX3X
CLK2
VANGL2
TOB2
ZC3H6
ARFGAP2
PCK1
ELMO1
SLC51B
IFRD2
PDK2
AURKAIP1
BNIP2
CLIC4
KATNA1
UBL7
TOP1MT
PLEKHA7
EIF4A3
PHF8
RCL1
PPP1R13B
THUMPD3
PMPCB
NME1-NME2
NME1
NFE2L2
C6orf136
IL27
SLC33A1
ZNF341
CALR
BDH1
TBCCD1
MGST2
ASB1
SLC25A45
HAL
EIF4H
SHFL
DRAP1
C11orf68
TRAF2
RECQL
GOLT1B
STK11
SPATA1
MCU
DENND2D
TEDC1
BZW2
TIMM44
UGP2
HERC5
ZDHHC4
KBTBD2
TRABD
SAXO2
EFL1
CTNNB1
RXRA
IL6ST
PPIB
AHCY
PA2G4
PACSIN2
IST1
PHPT1
CHN2
MRPS23
UPP1
ATF3
SLC25A6
FAM110A
ACACA
ZNF414
COQ10A
LRRC45
CENPX
GDPGP1
CIB1
ZBTB20
ABCA12
RCOR3
C6orf89
SRRM3
SDE2
PLCB2
LRRC37A3
MC1R
DROSHA
C5orf22
RASGRP2
CDC25C
DUSP4
HHAT
BOD1L1
DDIT4
WBP4
FAM120B
NMNAT1
LZIC
ZBTB17
TMEM248
RGPD2
RGPD1
RPLP0
PPP2R5A
METTL26
DUS1L
CENPA
PIM1
MAP2K1
SLC39A13
NOTCH2NLC
LIX1
ACVR1
PIP4P2
NUDT15
RBM27
H4C11
NREP
JAK3
BOLA3
PRDM1
CLCN6
IFNGR1
SAR1B
KCTD2
ATP5PD
SIPA1
TRDMT1
DMD
BRAP
ACOT2
ACAD10
GABRB2
ANAPC5
BARHL1
DNAJB2
SF3A3
RFWD3
MRPS15
FNTA
ATXN2
EXD1
EPHA10
CHP1
TCF19
CDK5RAP1
CCHCR1
TBL3
FRYL
DNAJB5
S100A2
HNRNPF
SLC25A25
NAIF1
ARL6IP1
TBC1D10B
MYLPF
EIF4A1
C18orf32
VAV1
ASNS
TAGLN2
MEPCE
SHC1
CKS1B
ZNF212
C4BPB
EEF1B2
ERLIN2
ARHGEF1
BUD13
ARL4A
ANKRD13D
SEC31A
TARS1
LMO7
TMEM41A
EIF2D
ZNF3
NDFIP2
LDHA
TEFM
GATAD2A
UAP1
SNAPC5
COQ8A
RNF19A
ELOC
H3-3B
ATG2A
NCOA4
CCDC130
SEC23A
ABHD12
ZNF143
ADGRA1
UCKL1
MRPL20
CHD8
TRMT2A
RANBP1
RPL37
C12orf29