ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX8814876 | Neuroblastoma
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◣ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ATF6
TBX2
HNMT
HHAT
TBX3
MTRNR2L2
CBFA2T2
SEMA5B
RWDD1
ABCA12
MARCOL
MYRFL
TNFRSF19
KIAA0319
QPRT
MYT1L
MFSD6
RARB
MTRNR2L8
DIABLO
HAO1
PTPRB
ADGRL2
DCTD
TES
ANO3
DEFB130B
DEFB130A
ZNF335
PDE4B
MME
PKDCC
GRWD1
DMD
GFRA3
NRSN1
IQCG
RPL35A
C1orf185
ZNF148
FRA10AC1
FREM1
RGPD2
RGPD1
GSC
RPS29
SULT1C4
POLR2E
KAZN
KCNIP1
GOSR2
TYRP1
NCAM2
RABL2B
EFTUD2
CCDC103
CLK2
EXOSC5
BCKDHA
CDH12
KCNK2
CLGN
RP1L1
SOX5
ATP23
CHRDL2
RABGGTB
SNCAIP
PES1
ITGAV
TMED1
ACACB
ZFHX3
HADHB
HADHA
LMO7
SYT16
CNTN5
SUDS3
TMEM17
RABL2A
MRTFA
RFPL1
ZFHX4
ELAVL4
CALHM5
KMT5A
SH2D4B
LRRC43
COX7A2L
GABRG2
ZNF608
ARHGEF10L
RPS12
PIK3C2G
PCGF1
RIMS1
AGR3
UFM1
DLC1
OAZ3
MRPL9
FYN
MRPS7
GGA3
PSMD9
HPD
ESRRG
NUP85
NALCN
IL17F
SMC3
DENR
CDK4
MYT1
SBNO1
CHRNA9
ISCU
SART3
RPS23
ATP6AP1L
NBN
SEC61B
ALG2
MAPK10
CACTIN
NUP205
BLCAP
SYTL3
SUCLG1
UPF2
PSMD1
NOMO3
NOMO1
RPL21
C17orf80
FAM104A
ADK
AP3M1
HOXA3
CSRNP3
PI4KB
RBBP5
GGT1
TNFSF13B
ZRANB2
STK36
RNF25
BBS9
PNO1
GPBAR1
SRPK2
SCRG1
FARSB
DNAH8
DCTN1
UBA3
SLC35B1
TTC8
ANTXR2
CNTNAP4
PYROXD2
MEGF6
OGFOD2
DDR2
NVL
HOXC6
HOXC4
LRRC8B
KCTD3
SUPV3L1
LIX1
MGP
FNIP2
TCF4
PSMD12
SF3B3
COG4
HTR3B
CCT2
KNTC1
REXO1
TMC3
MARCKS
AOPEP
TSNAX
ANAPC7
GOLGA5
RARA
TTI2
SORBS2
LUM
KLKB1
RNF111
MEIS2
DUSP6
PHOX2B
PTPRR
CD9
NOX5
PCDH15
ANKS1B
BDNF
ACTA2
LYRM4
FARS2
SSUH2
SLC17A2
CDC42EP3
GTDC1
MFAP4
TBR1
EIF3D
TSFM
SLC8A1
FIGN
RUNX1T1
GRAMD4
REC8
BAZ2A
DYNC1LI2
HEXIM2
STAM
VPS33A
CDK2AP1
C19orf48
BAG6
DAB2IP
SLC16A7
PLSCR5
SELENOF
HS2ST1
CD302
LRGUK
SULT6B1
CEBPZOS
PLEKHA6
KCNJ16
PAM
MLLT11
CDC42SE1
HEXB
CCKAR
VDAC2
SRD5A1
PDAP1
BUD31
MDM2
CAPRIN1
NUP107
CCDC177
SCHIP1
SERTAD4
ESRRB
TBL1X
FNDC5
ALK
ASIP
SLC26A7
ID1
CPSF6
POLR3A
HSPA9
KIF1A
CCDC174
LINGO2
MPP4
USO1
IRGQ
ZNF576
PLAC1
CCDC183
SLA
IPO13
VANGL2
OSGEP
APEX1
NEO1
FHL2
HOXC5
SLC25A12
NRXN3
LINC01638
SCRT2
FGL1
STAM2
HYKK
HAND2
CCSER1
PDE1A
LSMEM1
DZIP3
CIP2A
TXNRD1
TM4SF1
TSPAN31
ACTR10
ZCCHC8
CASP7
MCU
TNFAIP2
PRL
ANK3
FRS2
TRIM24
SNX6
TRAF3IP3
SMC2
CYTH1
BCO2
TTC13
AHNAK
C12orf65
SETD1B
RPS27A
CLHC1
SLC37A3
ACVR1
SLC25A44
HECW2
NUDT7
OSBPL7
KIF6
MRPS5
NKX6-1
ARHGAP11A-SCG5
ARHGAP11A
ADGRD1
CABLES1
MGAT4C
ERMP1
SPATS1
ETV1
POLR3F
DZANK1
DDX39B
TM2D1
ANKDD1B
JAKMIP2
PAK1IP1
C6orf52
BEND7
CTDSP2
NCLN
PPP1R3D
FAM217B
PDE12
MAP3K3
CHODL
NOMO2
TOM1L1
HOXD8
MAP4
SATB1
SAMD13
SKP1
SYBU
SPAG9
IL19
ZNF235
CEP41
GBA
TP73
BHLHE22
KIAA1217
FGF7
AXDND1
ZNF503
COMMD1
CCT4
ANAPC5
MAPKAPK5
ANKRD44
PKN2
BEST1
LIMCH1
OXR1
TSN
CHN1
CHD8
JMJD1C
USP1
POPDC2
SYT4
CNOT2
MRPL24
RBKS
BABAM2
RPS24
NFE2L2
TBC1D9
PTPRG
ALG5
P2RX6
KLHL24
PIN4
RNF34
LMO1
PJVK
TNFSF18
SYNPR
CAMTA1
ELMO1
PPFIA2
FOXP1
OGG1
METTL1
EEF1AKMT3
SLITRK6
PALLD
SMIM20
CNOT10
BICRA
GFRA1
MTHFS
ACSS1
COL5A2
TXNDC11
ZBTB20
ZNF383
MRPL38
OAS1
ATP5MG
ILF2
CIC
MEIS3
MRPS23
NFAM1
ITIH5
NDUFA4
TLE2
TAMALIN
ID3
PHOX2A
ANTKMT
IRX4
VTI1B
MED16
BRD4
SVOPL
NPPA
AGTR1
NPY2R
KIDINS220
MTUS1
TCF12
RAPGEF2
TNS1
NEUROG1
LZTS2
UTP23
FTCDNL1
SLC26A11
SGSH
PDGFRA
SDE2
PTPRO
HMGA1
CD200R1
TM9SF1
NDUFS7
TMEM51
ITFG2
MTMR14
CEP70
EYS
EGFR
POU2F1
LRIT2
TLR7
TM4SF4
CRYBB1
GORAB
ETV4
PLCH1
SNAI2
COLEC11
PTGES2
CHD3
MCC
DEFB136
PUM2
RHOF
XPNPEP3
ST13
MINDY2
CFAP251
LAMP5
C1orf158
ORAI1
LOC645177
C12orf77
PCBP1
GADD45GIP1
RUFY3
NME6
IRF9
XPO1
TRAF3IP2
GUCA1C
CDH23
POSTN
ALKBH5
COMMD2
PBX2
ATG4C
GSE1
CNPY2
CLASP2
MBNL2
GTF3C4
DDX31
NME1-NME2
NME1
ARL14EP
CCDC33
DPH6
IRF2BPL
RPS27
ADAMTSL1
SHD
PDE4D
ABAT
CDC73
EIF4ENIF1
NDUFA10
ATXN7L3B
PRCC
HIP1R
RPS10-NUDT3
RPS10
SHC4
EEF1G
IL9
HSD17B11
IRS2
PHC2
GRAP2
STRA6
LIN54
SUOX
BRPF1
SYNE3
AVIL
NXPE3
H4C15
H4C14
ZBTB18
TLE1
ICE1
MFN2
TTLL6
SH2B1
UNC80
PRR13
ZNF510
GALNT14
RIMBP2
CLDN22
DENND2B
ARL2BP
HDAC9
DGKH
ACOT11
UTRN
EYA1
PROSER1
NHLRC3
TNFAIP1
IFT20
CLIP1
DNAJB4
RAB3IP
WFIKKN2
CDKN2D
ATF3
RSPH4A
ATCAY
EIF3C
EIF3CL
BTRC
EEF1AKNMT
ELF1
WBP4
EDNRB
B3GNT4
PLD5
MRTO4
EMC1
PRDM10
NET1
VPS33B
ABCB9
SIAH3
CPA2
CCDC141
TBCK
AIMP1
WDR74
THAP12
GVQW3
PLA2G12B
ZNF687
TLX2
REEP6
PCSK4
STMND1
SH3D19
SEC14L1
SMARCD2
NR2F1
WDR25
WARS1
CLVS1
RRAS
PHGDH
ELAVL2
OTUD7B
CS
SSBP2
BSG
UBE4B
OTUD4
PCNX4
TMED7-TICAM2
TMED7
OIP5
NUSAP1
NPR1
MYO16
SLC24A2
TMED4
TAF9
RAD17
AK6
RSRC1
SNX17
EIF2B4
RABGAP1L
POLM
GINS4
ARHGAP25
STON2
RGMA
TMEM245
DACH1
HSPA1B
ZNF292
ID2
EIF4H
NT5C3A
MEIS1
SCN2A
KCNMB4
CPB1
USP32
GSTO1
PDGFB
DDX52
RPL7
RDH10
RAD52
YPEL5
SCAMP3
SIX2
FRZB
RFESD
ASNSD1
ASDURF
EXTL2
LRRTM4
GRIK3
POLDIP3
CHST11
RAB6D
TBL1XR1
CUL1
FAM110B
PSMD3
FADS2
DRGX
AMMECR1
HIBADH
SF3A3
ALG10B
ITPR1
HIF1AN
FBXO46
MLXIP
PRKCSH
CCDC151
MID1
ADAMTSL2
MC4R
SPARCL1
VPS26C
TMX4
ARL17B
ARL17A
CCNT1
PMF1-BGLAP
PMF1
ANXA11
GPR89B
FAM86B2
BRD7
PAF1
HEBP2
CDK12
SHISA3
DHRS3
NGDN
SNRPE
PLEKHG2
VPS25
RNF7
KERA
NRSN2
ST7
WASF1
FBXO38
PLPP5
RPUSD2
LRR1
TLE4
RBM27
TMUB2
GLI2
DPP9
DUSP12
TMEM259
METTL26
RPL27
ATP5MC3
HINT3
HMGN3
NDUFA5
SKIDA1
PCLO
RASGRP3
UNCX
POLR2J3
SALL1
CBX3
HNRNPA2B1
ZFYVE21
XRCC3
TMEM65
KIFC1
HLCS
MAPK14
EEPD1
NAP1L1
DHTKD1
CREB5
YEATS4
KDELR2
TRIOBP
REP15
MUC4
NUF2
PA2G4
UPP1
DLG2
TMEM126B
CIBAR1
HSPA6
POLR1F
ETV3
TRPM4
ECH1
KHDC4
TTC21B
AMBRA1
SOX4
FAM131A
ZFC3H1
THAP2
TDO2
MID1IP1
FLAD1
LDHA
ZDHHC17
SPAG16
PSMB4
UTP6
SLC35E2A
VPS37B
FGGY
ARL6IP4
TBX18
SYT2
TSC22D4
HOXC10
METTL7A
BRINP3
RGS8
UBE2T
TOMM34
TP53I3
XRCC2
CHCHD5
SLC28A3
KCNH7
CREB1
ZNF76
STAT2
LMBRD1
PAX6
BCL9
PPP1R15A
PARP2
DCLRE1B
AP4B1
DGLUCY
RPS6KA5
SSBP1
FAM228B
SF3B6
SESN3
THOC5
ASPM
TOMM40L
FAM110A
LEMD2
COPZ1
MSTO1
RXFP4
PPP1R11
LIPA
USP53
KIFBP
YIPF2
TIMM29
CCDC9B
DIRAS3
EN1
GATA4
WBP1L
SIRT4
PHLDA1
RACGAP1
C9orf72
AP3D1
COMMD9
ACP3
HOXD11
HNRNPD
SLC25A45
ARHGEF12
TP53BP1
DNAJC1
PCDHAC2
GPATCH4
UGP2
CTR9
C12orf57
ATF7IP
ARHGEF3
ASF1A
SALL4
KCNS3
TMEM120B
TEK
IGSF10
ZNF3
SSX2IP
VTA1
NMBR
CREB3L2
TIMELESS
UBE2G1
TBC1D10B
MYLPF
EPC1
MPV17L2
KCNH2
CXXC4
CLOCK
TGFBR3
KBTBD6
N4BP2L2
MALRD1
SMG5
PSMD11
NHLH1
THUMPD3
ZCCHC24
RNF11
MACIR
PEX11B
MAB21L2
SLIT3
MTOR
UQCRQ
GDF9
OSBPL9
PPME1
C2CD3
ZNF254
MAPRE3
CNTN1
FAM184A
KCNK3
NEURL2
CTSA
SPECC1
KMT5C
C3orf86
DDX46
CENPF
EGLN2
C11orf91
PAIP2B
PRXL2B
SLC19A1
ZNF81
IL33
SFRP1
MTMR4
NCOA7
TBRG4
DUSP10
GORASP2
SGTA
MAP3K14
ZNF48
SOX11
AMPD3
ORC4
MBD5
CACNB2
FLVCR1
RBMS3
NOL11
BMS1
RUNDC1
PTGES3L-AARSD1
PTGES3L
JUND
LBH
TMEM205
CCDC159
NAA35
RELN
VARS1
H4C4
PIPOX
NBEA
WNT5B
MAB21L1
SELENOH
TUT7
PPIL3
NIF3L1
SPATC1L
SMARCC2
RBM28
IGF2BP3
AVPI1
EEF1A1
ELL
GPR1
GULP1
OLFML3
KDM3A
MFSD8
ABHD18
PGD
DHX8
OS9
PNN
SPAG4
DIMT1
CEP85L
SPRED2
FZR1
TIPRL
MED1
NEUROG2
B4GAT1
C12orf73
LIN28B
KATNBL1
RPS26
ADSS2
TRIM9
ZNF768
M6PR
KLRG1
FNBP4
CEP350
DSCAML1
TMEM9
TLN1
CREB3
SLC24A1
INTS14
GTF2H2
GTF2H2C