ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584307 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◣ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

RABL2B
RABL2A
MAPKAPK5
POLR3F
DZANK1
NME6
PSMD1
IPO13
ZNF335
NCLN
DYNC1LI2
SUDS3
CACTIN
RWDD1
NUP85
NEUROG2
VTI1B
VDAC2
POLR2E
MRPS7
GGA3
EFTUD2
CCDC103
HSPA9
NUP205
PSMG2
CEP76
TSN
TBCK
AIMP1
NVL
GOSR2
REXO1
DCTN1
TSNAX
STAM2
RPL21
SKP1
IRGQ
ZNF576
EXOSC5
BCKDHA
C19orf48
SEC61B
ALG2
PES1
STAM
CAPRIN1
PNO1
SRD5A1
RBBP5
BLCAP
SLC35B1
UPF2
FARSB
LYRM4
FARS2
ACTR10
ATP5MG
PCBP1
NEUROG3
PAK1IP1
C6orf52
NDUFA4
HADHB
HADHA
GOLGA5
PSMD12
ZRANB2
TMED1
COX7A2L
VARS1
TTC8
DPH6
SUPV3L1
ANAPC7
PI4KB
ISCU
SART3
PDAP1
BUD31
UFM1
MRPS5
ICE1
IQCG
RPL35A
SF3B3
COG4
SELENOF
HS2ST1
RPS23
ATP6AP1L
RABGGTB
ADK
AP3M1
RBKS
BABAM2
USP1
PROSER1
NHLRC3
C17orf80
FAM104A
SMC2
EIF4ENIF1
OSGEP
APEX1
XPNPEP3
ST13
RPS12
RPS27A
CLHC1
BICRA
PAF1
UBE2I
COMMD1
CCT4
TM9SF1
NDUFA10
HES1
BNIP3
VEZT
FGD6
MRTO4
EMC1
ATOH1
ARHGAP11A-SCG5
ARHGAP11A
PIN4
BAG6
RPS29
LRR1
RBBP7
GTF3C4
DDX31
INSM1
DDX39B
C16orf91
RPN1
ARHGEF1
SUCLG1
NEUROG1
CDC73
EIF2S3
OAZ3
MRPL9
ANKLE2
TAF9
RAD17
AK6
SKIL
PMAIP1
PCBD2
PDHX
APIP
SEC11C
RPL7
RDH10
LPIN1
GADD45GIP1
PRUNE2
PTGES2
ZGPAT
ARFRP1
STK36
RNF25
PRDM12
ALKBH5
IGFBP2
ZNF383
SRSF11
LRRC40
ANK2
GFER
CNPY2
TLE2
SH2B1
PDHB
GORAB
AXDND1
TMEM70
RYBP
KIF26A
KIF21B
EIF4H
RBPJ
NELFA
CLDN2
PDE12
RGS12
KDM1A
CASC3
BFSP1
CLEC18C
MYRIP
RAI14
GLT8D1
SPCS1
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
BBS9
HSPA1B
TBC1D8
MALRD1
BRWD1
CLGN
ZNF746
TLE4
JAKMIP1
DDX3X
TPRA1
TIGD1
EIF4E2
HOXB4
GFRA3
MEPCE
ZCWPW1
NRDE2
HOXA4
CDIP1
ID1
DGKZ
MRPL38
CCNDBP1
ARL14EP
CS
GTF3A
SLC7A6OS
PRMT7
SPHK2
RPL18
SLC10A2
CNTLN
PNKD
PCBP2
VOPP1
NCBP3
RPS10-NUDT3
RPS10
ZFHX3
CCDC43
ZNF341
RNF138
SFT2D2
GADD45G
ACBD6
RNF32
MFSD3
RPS26
WDR47
CPVL
CHN2
DUSP2
NPAS4
SRRM3
CALHM6
ZNF292
RARA
SLC39A6
C12orf42
CBX3
HNRNPA2B1
MUSTN1
TCHP
VANGL2
E2F6
CHD8
CPLX1
OR8J1
AP1B1
ZBTB25
ZBTB1
CNN3
SPACA1
CDX1
SGK3
DNAJB2
PEX2
CLEC18B
SEMA4B
ZNF891
ZNF10
CAMTA1
HNRNPD
UGT8
EVI5
ITPRIP
POLR3A
KMT2A
DHX32
MGST1
RHBDD1
TRDMT1
RCOR1
HEY1
ZNF783
FTCDNL1
KAT6A
HOXD3
CEP41
PLXNB1
TBC1D15
POLR2J3
MET
CEMP1
ARHGEF28
USP17L15
YAP1
SLC25A6
MTRNR2L8
MTRNR2L2
RARB
SPATC1L
FLOT1
SP2
NDUFS7
DHRS3
KAT6B
GPR108
NEURL2
CTSA
TTI2
WDR74
HOXA2
DNM2
ID2
P4HB
TEPSIN
NDUFAF8
MINDY2
TBX2
RAB5B
KANSL3
STX18
DONSON
DOLPP1
CBFA2T2
SP5
ATF6
OTUD7B
UPF3A
KATNB1
PANK2
CCDC174
FRA10AC1
ZNF687
PGK1
HUS1
SMARCD2
RFX1
XKR7
DUSP6
MTMR4
QPRT
GATA4
FOXP1
NRL
DPP9
TBX3
ALKBH7
CNOT2
ANKHD1-EIF4EBP3
ANKHD1
MRPS31
ARRDC4
ST18
PDE4D
NFKBIA
ARSG
HOXA3
IQSEC3
POLDIP3
TNFRSF19
RMND5A
DCAF11
SP1
NR2F1
RARG
PCNA
ZNF608
OSBP
PPCDC
ZFHX4
MRPL34
STIP1
RNF207
SOD2
ATP5F1B
SLC45A4
MDM2
LPCAT3
KMT5A
KAZALD1
RUNX1T1
MACROH2A1
GPCPD1
SMIM20
CRLS1
EVI5L
GRSF1
EIF2AK3
MTF2
PPP6R3
METTL11B
KCNAB2
POLG
PKN2
KNL1
HEXIM2
DAGLB
SHF
MLEC
ANKRD28
FBXO31
SACM1L
SMG6
KDM3A
PRMT5
EIF3D
SLC30A4
DIABLO
SREBF1
NLK
RAB37
COX5A
ZNF503
RTN4
SERPINE1
CBX5
HNMT
HMGB1
SERPINB1
NKD1
TMEM101
ARHGEF10L
NCOA2
G3BP1
EFEMP2
CDS2
USP42
ARID4A
DUSP9
KIAA0319
ILF2
TXNDC11
TDRKH
HTR5A
AIFM2
TRIB1
SEC14L1
HIBADH
WTAP
ZNF76
LUC7L2
PRKACA
ARHGAP4
MBD2
ROGDI
NRSN2
NR2C1
TOP2A
TCTEX1D4
BTBD19
CPSF4L
HMGCS1
IQGAP2
RNF149
NEDD9
PRDM10
USPL1
SH3BP2
IRF9
PIKFYVE
FAM107B
ING1
GOT1
TBL1X
INAFM2
TMEM60
PHTF2
RASSF2
LRCH4
FBXO24
EIF1B
HES3
BHLHE40
CCDC88A
TUBGCP3
ANKS4B
NANP
B4GAT1
CYB5R4
LCK
ACYP1
MAF1
SCAP
ADM
CMSS1
GFOD1
EPM2A
EXOSC4
YTHDF2
STX16
TSPAN4
TUBB4B
MFSD11
HPCAL1
LBX2
FAAP24
CEP89
POLR3E
ICAM1
PCTP
PARK7
SEPTIN9
PCGF1
ANP32E
DLC1
DCAF7
CELSR3
MPND
ADAP1
NEO1
HSP90B1
ZC2HC1C
LTBR
DUSP12
UBE2C
SRCAP
LOC730183
GPATCH8
IRS1
CALM2
GBA
HNRNPC
TANK
TRAF4
ATP23
MPV17L2
SLC25A19
CDC42EP3
ABHD2
ARNTL
SHB
CLK1
CLCN3
CCDC59
H4C12
MVD
HSPE1-MOB4
HSPE1
HSPD1
CYCS
ZNF148
DDX1
HECTD4
ZCCHC3
SNX3
NCBP2AS2
NCBP2
MTRF1L
PRR14
YARS1
S100PBP
HOXC5
LRRC59
CCDC107
DNAJB1
TMEM94
KIAA0319L
TMPPE
GLB1
HNRNPUL1
TCF4
SERPINB9
ZNF740
CSAD
TCERG1
GGT1
ARIH2
KPNB1
FMC1-LUC7L2
FMC1
PEX14
CSRNP1
CMTR1
NKIRAS1
C8orf37
GLRX5
NFE2
ZBTB18
ARHGAP24
STAT3
FILIP1L
KHSRP
NAT8
WBP1L
BAZ1B
JUP
FAM227B
DTWD1
STARD4
NRSN1
LIN28A
ACVR1
GATD3B
GATD3A
CIC
ETV4
MYADM
DSCAML1
NBPF1
MSMO1
ATXN1L
ELOVL6
RSRC1
NCOA7
FBXO41
CCNL1
CCPG1
C15orf65
LAPTM5
LNPEP
RAB11A
MBD6
ARID5A
TRIP4
DCP1A
NUF2
PXMP4
MFSD6
CEBPE
SRSF2
KAT7
ZNF219
SLX1B
SLX1A
FASTKD1
BOLA2B
SKIV2L
NELFE
DYNLT1
CD24
PSMD9
HPD
HINT2
TOMM40
SIRT4
MEF2C
USP3
ACTL6A
TMEM9
IL6ST
SPIN1
TLN1
CREB3
L1CAM
SLC7A5
PSMD3
MANF
HOXC6
HEBP2
MRPL4
HBP1
RASSF5
LONRF3
SKA2
PRR11
C3
OTUD4
CDCA7L
RPS24
CALR
REC8
PARP2
GLRA1
HMGN4
CLTC
LZTFL1
TMEM86A
SLCO4C1
ADAM17
GTF2H2C_2
GSTA4
EEF1AKNMT
TOP2B
PKDCC
TRIM44
HSPA5
AK2
TBRG4
RBM15
BOLA2
BHLHA15
RAD50
LOC100289561
HOXC4
ARMC1
HNRNPL
PLEKHA6
AP3M2
CNPY3
PGP
C16orf54
ELF1
LDLR
RPS6KA1
MAP11
MFN2
NR1D2
PEX3
CPLX2
ADAT2
STK38
AOPEP
UBAP2
NBN
TIGD2
OPA1
PSMF1
ADRM1
CABIN1
C1RL
BAIAP2
PKM
H6PD
DYNLL1
STT3A
IARS1
ERRFI1
C11orf24
PXYLP1
PTGES3
CYBA
TXNRD1
DIAPH1
YIF1A
BRD2
TMEM259
SPSB3
PARL
H4C8
KEAP1
SNRPF
NCDN
POR
H2AZ2
SPECC1
KMT5C
BOLA2-SMG1P6
BIN2
USP15
SLC24A1
INTS14
IQCH
AAGAB
AKIRIN1
RPS6KB2
IBTK
PWWP2A
GTF2H2
RFESD
GBE1
SLC11A2
CYP1A1
RNASEH1
ZBTB45
E2F3
SERTAD2
NADK
NBEAL2
H4C15
H4C14
MAPKAPK3
CISH
FAM162A
CCDC58
TMCO6
ADGRG3
GATAD2A
DENND4B
MAP3K3
SEMA5B
MFSD8
ITFG2
ABHD18
AKAP1
MED9
CDKN2D
MTHFD1L
CEP70
TLE3
PIWIL2
VIRMA
TMBIM6
GRHL3
SH3TC1
SEPTIN2
HDLBP
ACAT2
WDR25
WARS1
TMEM222
DIAPH3
MAN2C1
LEKR1
CNOT1
SPAG7
NIBAN2
ZNF77
AGT
GTF2H2C
ZFYVE21
XRCC3
HESX1
MAD2L1BP
PIK3AP1
DZIP3
CIP2A
MTHFR
WBP4
NME1-NME2
NME1
WNT10B
PTP4A2
CD38
TOM1L2
DRC3
SLC35E2A
EIF4A3
CLIC4
PLIN2
DRAP1
C11orf68
GRWD1
SRPRA
UGT2A3
NFE2L1
FGFRL1
FAM110A
TMEM217
TBC1D22B
C12orf65
LFNG
IDH1
FGR
MED23
RPS8
RNF139
MTMR12
HNRNPA1
TRMT6
MCM8
BCAR3
SLC25A25
H4C3
TMX2
MED19
KLF17
TRIAP1
FLAD1
ZDHHC4
MIA2
FGA
OTX1
MRPS23
SERPINB6
CX3CL1
STMN3
RNF34
H2AX
MSANTD4
CLK2
TOB2
ZC3H6
ARFGAP2
PCK1
ELMO1
SLC51B
IFRD2
PDK2
AURKAIP1
BNIP2
DUS1L
C6orf89
KATNA1
UBL7
TOP1MT
PLEKHA7
PHF8
RCL1
PPP1R13B
THUMPD3
PMPCB
SDE2
NFE2L2
C6orf136
IL27
SLC33A1
BDH1
MLLT11
CDC42SE1
TBCCD1
MGST2
ASB1
SLC25A45
HAL
SHFL
TRAF2
RECQL
GOLT1B
STK11
SPATA1
MCU
DENND2D
TEDC1
BZW2
TIMM44
LEMD2
UGP2
HERC5
NREP
KBTBD2
TRABD
SAXO2
FNTA
EFL1
CTNNB1
RXRA
PPIB
AHCY
PA2G4
PACSIN2
IST1
CIPC
PHPT1
RBM25
MVK
R3HCC1
UPP1
ATF3
FDFT1
ACACA
ZNF414
COQ10A
LRRC45
CENPX
UROD
HECTD3
GDPGP1
CIB1
ZBTB20
ABCA12
RCOR3
PLCB2
LRRC37A3
MC1R
DROSHA
C5orf22
RASGRP2
CDC25C
DUSP4
TLX2
HHAT
MYT1L
BOD1L1
DDIT4
FAM120B
NMNAT1
LZIC
SRP9
GMEB2
ZBTB17
TMEM248
RGPD2
RGPD1
RPLP0
PPP2R5A
METTL26
FDPS
CENPA
PIM1
MAP2K1
SLC39A13
NOTCH2NLC
LIX1
PIP4P2
NUDT15
RBM27
H4C11
USP32
JAK3
BOLA3
PRDM1
CLCN6