ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584310 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◣ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

PSMD1
ZNF335
RABL2A
NME6
RABL2B
NUP85
CACTIN
MAPKAPK5
IPO13
VDAC2
VTI1B
POLR3F
DZANK1
NVL
HSPA9
PSMG2
CEP76
SUDS3
DYNC1LI2
EFTUD2
CCDC103
GOSR2
RWDD1
NUP205
LYRM4
FARS2
TBCK
AIMP1
SRD5A1
RPL21
BLCAP
REXO1
HADHB
HADHA
EXOSC5
BCKDHA
POLR2E
MRPS7
GGA3
STAM
C19orf48
PES1
STAM2
NCLN
UPF2
ATP5MG
DCTN1
SKP1
ANAPC7
FARSB
TSNAX
IRGQ
ZNF576
TSN
ISCU
SART3
PNO1
TTC8
ZRANB2
SEC61B
ALG2
COX7A2L
RABGGTB
PDAP1
BUD31
XPNPEP3
ST13
CAPRIN1
SMC2
PCBP1
SF3B3
COG4
TMED1
VARS1
HOXA4
PI4KB
RBBP5
NDUFA4
ACTR10
IQCG
RPL35A
PROSER1
NHLRC3
RPS27A
CLHC1
RPS23
ATP6AP1L
SELENOF
HS2ST1
GOLGA5
EIF4ENIF1
SLC35B1
DPH6
PSMD12
UFM1
OSGEP
APEX1
PAK1IP1
C6orf52
ADK
AP3M1
MRPS5
RPS12
ANK2
DDX39B
RBKS
BABAM2
SUPV3L1
BAG6
ARHGAP24
USP1
NEUROG2
C17orf80
FAM104A
ICE1
ARHGAP11A-SCG5
ARHGAP11A
TM9SF1
RPS29
LRR1
PTGES2
SUCLG1
TLE4
COMMD1
CCT4
C16orf91
PIN4
NDUFA10
PAF1
RPL7
RDH10
TRIM71
ATOH1
PDHB
PRUNE2
BNIP3
METTL11B
HES1
RGS12
VEZT
FGD6
PRDM12
LRIG3
PDHX
APIP
MRTO4
EMC1
PDZRN3
SPTBN1
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
TPO
ZFHX4
TAF9
RAD17
AK6
STK36
RNF25
IGFBP2
OAZ3
MRPL9
CEP41
ZCCHC13
EIF2S3
GALNT14
HOXB4
FHL1
HOXA3
SPACA1
ZNF608
PMAIP1
CTXN3
ID1
RAI14
NEUROG3
GORAB
ATOH8
SEC11C
KIF21B
CETN1
TPRA1
PDE12
HOXA2
JAKMIP1
CCDC198
ZGPAT
ARFRP1
SKIL
CNPY2
RARA
ACVR1
KLB
HES3
MTMR7
ELAPOR2
UBE2I
TLE2
NEUROG1
BFSP1
CDC73
LMO1
GTF3A
DDX3X
BICRA
HOXC5
CHD7
GADD45GIP1
DLG2
PPFIBP2
ZNF746
NEO1
CLEC18C
PCBD2
SSBP2
MUSTN1
TMEM237
PPP1R3D
FAM217B
MRPL38
ZNF383
DSCAML1
ID3
PHOX2B
RPN1
USP17L15
FMN2
GTF3C4
DDX31
CLDN2
MEF2C
RAN
ALKBH5
DONSON
MEIS3
CNN3
GLT8D1
SPCS1
SLC39A14
TMPPE
GLB1
RCOR3
CAMTA1
CS
CHD8
LMO2
FAM181A
PBX2
CBX3
NR2F1
IPO11
RCOR1
ARHGAP10
ZNF853
QPRT
PDPN
HOXD3
LIX1
CASC3
RARB
LIN28A
REC8
VANGL2
LGALS12
KMT2A
CLEC18B
FAM162A
CCDC58
CPLX1
TSPAN11
AXDND1
VOPP1
KIF26A
ABAT
SH2B1
ARHGEF28
PHTF1
SRSF11
LRRC40
FGF10
TRDMT1
FGFR4
ARHGEF1
MYLK3
PRSS47
KAT6B
DUSP2
MAD2L2
DRAXIN
DCDC2
SPOCK2
WBP1L
GAS2L3
SOX6
ADM
SH3BP4
DUSP4
PEX2
ANKRD6
HNRNPD
MTRNR2L8
MTRNR2L2
SPATC1L
FLOT1
SP2
NDUFS7
DHRS3
BBS9
GPR108
NEURL2
CTSA
TTI2
WDR74
DNM2
ID2
ANKLE2
P4HB
TEPSIN
NDUFAF8
MINDY2
RPS10-NUDT3
RPS10
NPAS4
CCNDBP1
TBX2
CLGN
RAB5B
KANSL3
STX18
ZFHX3
DOLPP1
HSPA1B
CBFA2T2
SP5
ATF6
OTUD7B
UPF3A
RBPJ
KATNB1
PANK2
CCDC174
FRA10AC1
ZNF687
PGK1
HUS1
SMARCD2
RFX1
XKR7
DUSP6
MTMR4
GATA4
FOXP1
NRL
DPP9
TBX3
ALKBH7
CNOT2
ANKHD1-EIF4EBP3
ANKHD1
MRPS31
ARRDC4
ST18
PDE4D
NFKBIA
ARSG
IQSEC3
POLDIP3
TNFRSF19
RMND5A
DCAF11
SP1
RARG
PCNA
OSBP
PPCDC
MRPL34
INSM1
STIP1
RNF207
SOD2
ATP5F1B
SLC45A4
MDM2
LPCAT3
KMT5A
KAZALD1
RUNX1T1
MACROH2A1
GPCPD1
MALRD1
SMIM20
CRLS1
EVI5L
GRSF1
NELFA
EIF2AK3
MTF2
PPP6R3
GADD45G
TMEM70
KCNAB2
POLG
PKN2
KNL1
HEXIM2
DAGLB
SHF
MLEC
MYRIP
ANKRD28
FBXO31
CCDC43
SACM1L
SMG6
KDM3A
PRMT5
RBBP7
EIF3D
SLC30A4
DIABLO
SREBF1
NLK
RAB37
COX5A
ZNF503
RHBDD1
RTN4
SERPINE1
CBX5
HNMT
HMGB1
SERPINB1
NKD1
TMEM101
ARHGEF10L
NCOA2
G3BP1
EFEMP2
CDS2
EIF4H
USP42
ARID4A
DUSP9
KIAA0319
ILF2
PNKD
TXNDC11
TDRKH
HTR5A
AIFM2
TRIB1
SEC14L1
HIBADH
WTAP
ZNF76
LUC7L2
PRKACA
ARHGAP4
MBD2
ROGDI
NRSN2
NR2C1
TOP2A
TCTEX1D4
BTBD19
TIGD1
EIF4E2
CPSF4L
HMGCS1
IQGAP2
RNF149
NEDD9
PRDM10
USPL1
SH3BP2
IRF9
PIKFYVE
FAM107B
ING1
GOT1
TBL1X
INAFM2
TMEM60
PHTF2
RASSF2
LRCH4
FBXO24
EIF1B
BHLHE40
CCDC88A
TUBGCP3
ANKS4B
NANP
B4GAT1
CYB5R4
LCK
ACYP1
HNRNPA2B1
MAF1
SCAP
CMSS1
GFOD1
EPM2A
EXOSC4
YTHDF2
STX16
TSPAN4
TUBB4B
MFSD11
HPCAL1
LBX2
FAAP24
CEP89
POLR3E
ICAM1
PCTP
PARK7
SEPTIN9
PCGF1
TCHP
ANP32E
DLC1
DCAF7
CELSR3
MPND
ADAP1
HSP90B1
ZC2HC1C
LTBR
DUSP12
UBE2C
SRCAP
LOC730183
GPATCH8
IRS1
CALM2
GBA
BRWD1
HNRNPC
TANK
MEPCE
TRAF4
ATP23
MPV17L2
SLC25A19
CDC42EP3
ABHD2
ARNTL
SHB
CLK1
CLCN3
CCDC59
H4C12
MVD
HSPE1-MOB4
HSPE1
HSPD1
CYCS
LPIN1
ZNF148
DDX1
HECTD4
ZCCHC3
SNX3
NCBP2AS2
NCBP2
MTRF1L
PRR14
YARS1
S100PBP
ZCWPW1
LRRC59
CCDC107
DNAJB1
POLR2J3
TMEM94
KIAA0319L
HNRNPUL1
TCF4
SERPINB9
ZNF740
CSAD
TCERG1
GGT1
ARIH2
KPNB1
FMC1-LUC7L2
FMC1
PEX14
CSRNP1
CMTR1
NKIRAS1
C8orf37
GLRX5
NFE2
ZBTB18
STAT3
FILIP1L
KHSRP
NAT8
BAZ1B
JUP
FAM227B
DTWD1
STARD4
NRSN1
GATD3B
GATD3A
CIC
ETV4
MYADM
NBPF1
MSMO1
ATXN1L
ELOVL6
RSRC1
NCOA7
FBXO41
CCNL1
POLR3A
CCPG1
C15orf65
LAPTM5
LNPEP
RAB11A
MBD6
ARID5A
TRIP4
DCP1A
NUF2
PXMP4
MFSD6
CEBPE
SRSF2
KAT7
ZNF219
SLX1B
SLX1A
FASTKD1
BOLA2B
SKIV2L
NELFE
DYNLT1
CD24
PSMD9
HPD
HINT2
TOMM40
SIRT4
USP3
ACTL6A
TMEM9
IL6ST
SPIN1
TLN1
CREB3
L1CAM
CPVL
SLC7A5
PSMD3
MANF
HOXC6
HEBP2
MRPL4
HBP1
RASSF5
LONRF3
SKA2
PRR11
C3
OTUD4
CDCA7L
GFRA3
RPS24
CALR
PARP2
GLRA1
HMGN4
CLTC
LZTFL1
TMEM86A
SLCO4C1
ADAM17
GTF2H2C_2
GSTA4
EEF1AKNMT
TOP2B
PKDCC
TRIM44
HSPA5
AK2
TBRG4
RBM15
BOLA2
BHLHA15
RAD50
LOC100289561
HOXC4
ARMC1
HNRNPL
PLEKHA6
AP3M2
CNPY3
PGP
C16orf54
ELF1
LDLR
RPS6KA1
MAP11
MFN2
CHN2
KDM1A
NR1D2
PEX3
CPLX2
ADAT2
STK38
AOPEP
UBAP2
NBN
TIGD2
OPA1
PSMF1
ADRM1
CABIN1
C1RL
BAIAP2
PKM
H6PD
DYNLL1
STT3A
IARS1
ERRFI1
C11orf24
PXYLP1
PTGES3
CYBA
TXNRD1
DIAPH1
YIF1A
BRD2
TMEM259
SPSB3
PARL
H4C8
KEAP1
SNRPF
NCDN
POR
H2AZ2
ZNF292
SPECC1
KMT5C
BOLA2-SMG1P6
BIN2
USP15
SLC24A1
INTS14
IQCH
AAGAB
AKIRIN1
RPS6KB2
IBTK
PWWP2A
GTF2H2
RFESD
GBE1
SLC11A2
CYP1A1
RNASEH1
KAT6A
ZBTB45
E2F3
SERTAD2
NADK
NBEAL2
H4C15
H4C14
MAPKAPK3
CISH
TBC1D8
TMCO6
ADGRG3
GATAD2A
DENND4B
MAP3K3
SEMA5B
MFSD8
ITFG2
ABHD18
AKAP1
MED9
CDKN2D
MTHFD1L
CEP70
TLE3
PIWIL2
VIRMA
TMBIM6
GRHL3
SH3TC1
SEPTIN2
HDLBP
ACAT2
WDR25
WARS1
TMEM222
DIAPH3
MAN2C1
LEKR1
CNOT1
SPAG7
NIBAN2
ZNF77
AGT
GTF2H2C
ZFYVE21
XRCC3
HESX1
MAD2L1BP
PIK3AP1
DZIP3
CIP2A
MTHFR
WBP4
NME1-NME2
NME1
DGKZ
WNT10B
PTP4A2
CD38
TOM1L2
DRC3
SLC35E2A
EIF4A3
CLIC4
PLIN2
DRAP1
C11orf68
GRWD1
SRPRA
UGT2A3
NFE2L1
FGFRL1
FAM110A
TMEM217
TBC1D22B
C12orf65
LFNG
IDH1
FGR
MED23
RPS8
RNF139
GFER
MTMR12
HNRNPA1
TRMT6
MCM8
BCAR3
SLC25A25
H4C3
TMX2
MED19
KLF17
TRIAP1
FLAD1
ZDHHC4
MIA2
FGA
OTX1
MRPS23
SERPINB6
CX3CL1
STMN3
RNF34
H2AX
MSANTD4
CLK2
TOB2
ZC3H6
ARFGAP2
PCK1
ELMO1
SLC51B
IFRD2
PDK2
AURKAIP1
BNIP2
DUS1L
C6orf89
KATNA1
UBL7
TOP1MT
PLEKHA7
PHF8
RCL1
PPP1R13B
THUMPD3
PMPCB
SDE2
SLC25A6
NFE2L2
C6orf136
IL27
SLC33A1
ZNF341
BDH1
MLLT11
CDC42SE1
TBCCD1
MGST2
ASB1
SLC25A45
HAL
SHFL
TRAF2
RECQL
GOLT1B
STK11
SPATA1
MCU
DENND2D
TEDC1
BZW2
TIMM44
LEMD2
UGP2
HERC5
NREP
KBTBD2
TRABD
SAXO2
FNTA
EFL1
CTNNB1
RXRA
PPIB
AHCY
PA2G4
PACSIN2
IST1
CIPC
PHPT1
RBM25
MVK
R3HCC1
UPP1
ATF3
FDFT1
ACACA
ZNF414
COQ10A
LRRC45
CENPX
UROD
HECTD3
GDPGP1
CIB1
ZBTB20
ABCA12
SRRM3
PLCB2
LRRC37A3
MC1R
DROSHA
C5orf22
RASGRP2
CDC25C
TLX2
HHAT
MYT1L
BOD1L1
DDIT4
FAM120B
NMNAT1
LZIC
SRP9
GMEB2
ZBTB17
TMEM248
RGPD2
RGPD1
RPLP0
PPP2R5A
METTL26
FDPS
CENPA
PIM1
MAP2K1
SLC39A13
NOTCH2NLC
PIP4P2
NUDT15
RBM27