ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584303 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◣ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
RABL2B
RABL2A
PSMD1
NME6
MAPKAPK5
RWDD1
IPO13
POLR3F
DZANK1
CACTIN
SUDS3
PSMG2
CEP76
EFTUD2
CCDC103
NUP85
VDAC2
GRSF1
NVL
HSPA9
DYNC1LI2
SP5
RPL21
C19orf48
POLR2E
PMAIP1
STAM2
STAM
GOSR2
TBCK
AIMP1
TSN
ATP5MG
VTI1B
REXO1
NUP205
MRPS7
GGA3
EXOSC5
BCKDHA
NDUFA4
DCTN1
CAPRIN1
SEC61B
ALG2
BLCAP
IRGQ
ZNF576
UPF2
PES1
PNO1
SKP1
NEUROG2
NCLN
PAK1IP1
C6orf52
FARSB
RBBP5
SLC35B1
TSNAX
ACTR10
DPH6
SELENOF
HS2ST1
GOLGA5
SRD5A1
HADHB
HADHA
UBE2I
TMED1
LYRM4
FARS2
RPS12
PROSER1
NHLRC3
PCBP1
VARS1
RBKS
BABAM2
TTC8
PSMD12
ICE1
RPS23
ATP6AP1L
SPECC1
MRPS5
ANAPC7
USP1
SMC2
COX7A2L
EIF4ENIF1
ZRANB2
PI4KB
ISCU
SART3
C17orf80
FAM104A
IQCG
RPL35A
SUPV3L1
RABGGTB
PDAP1
BUD31
ADK
AP3M1
UFM1
PAF1
BAG6
TM9SF1
PRSS56
SF3B3
COG4
XPNPEP3
ST13
NKD1
PTGES2
OSGEP
APEX1
COMMD1
CCT4
PDZD2
PIN4
DDX39B
RPS27A
CLHC1
STK36
RNF25
NEUROG1
NEUROG3
RPS29
LRR1
BICRA
SUCLG1
NDUFA10
IGFBP2
OR2L13
EIF2S3
ANKLE2
KLF17
TAF9
RAD17
AK6
SLC39A7
RXRB
OAZ3
MRPL9
ZSWIM6
SEC11C
PDHX
APIP
ARHGAP11A-SCG5
ARHGAP11A
HOXA4
GADD45GIP1
RPL7
RDH10
CPSF4L
GPR78
ATOH1
CDC73
OTX1
GADD45G
MRTO4
EMC1
PDPN
PCBD2
BNIP3
GTF3C4
DDX31
GORAB
CDX1
HES1
CNPY2
RPN1
METTL11B
WBP1L
TMPPE
GLB1
ST18
RBBP7
PNKD
CSRNP1
ZNF383
SMPD1
AXDND1
STK38
SKIL
ALKBH5
TLE3
PRUNE2
MALRD1
ZGPAT
ARFRP1
SP7
LZTFL1
PALM2AKAP2
CTXN3
EBP
MRPL38
MYRIP
PDHB
HSPA1B
CLGN
UROD
HECTD3
SRSF11
LRRC40
NEBL
GIMAP5
MEIS2
YWHAB
LY6G6D
SP8
TKT
CPVL
CHN2
RNF32
VEZT
FGD6
GLT8D1
SPCS1
PDE12
LRRC8C
FAM3C
EIF4H
PCBP4
NUP210
FAM72D
GUK1
HOXB4
TBC1D8
CIAO2A
MEIS3
DGKZ
SUSD6
HERPUD1
TLE2
FAM107B
DKK1
NELFA
ITPRIP
TMEM131L
H3C12
ARSI
SH3D19
PTGES3
ULBP3
MYORG
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
BNIP2
RPS24
TK1
COQ3
HOXA3
CS
GCNT2
CMTR1
TRAP1
YAP1
LINGO1
ZNF503
HOXC4
LIN28B
ZNF471
CCDC43
CFAP410
RPS10-NUDT3
RPS10
TCHP
PAPPA
INSM1
PANK2
RARA
TPRA1
ARHGAP24
RNF138
CHD8
AXIN2
TMEM70
ZNF746
HOXB1
MAPK8
MUSTN1
NABP1
CCDC169-SOHLH2
CCDC169
QPRT
DSCAML1
HEBP1
CDK5R1
SERTAD3
ZFHX3
FBXO46
RSPO4
FAM162A
CCDC58
PCDH18
MPZL2
LIN28A
USP17L15
MTCH2
KRTAP3-1
ZNF341
DTNB
CCDC114
ASIP
SREBF1
CLDN2
SYT7
SH2B1
BBS9
KDM3A
ADM
CLDN3
SOX12
CERS6
LSM14B
NRARP
TRDMT1
IRS2
ZGRF1
LARP7
KAT6B
CCNI
MRPL34
LIMS1
PAX3
NEDD9
TBC1D10A
ANO4
TMEM114
KMT2A
ANK2
REC8
RARB
SYBU
MBNL3
VENTX
SLC10A2
MAP1A
PKD1
PEPD
CYREN
CENPBD1
DHX32
TCF20
GAS2L1
STARD4
RCOR3
TBL1XR1
MXD3
TLE4
SIPA1
RXYLT1
CD9
LPIN1
OR8J1
RPRM
CSTF2T
CSNK2A2
TLE1
BTRC
NPAS4
ZFHX4
SERPING1
CER1
RUNX1T1
H4C6
PAH
ASCL1
MSGN1
PAX6
MEPCE
ZCWPW1
HOXC6
TFDP2
CBX5
BRWD1
PLEKHA5
RNF38
ZNF76
DLL3
HOXC5
PRTG
NEURL2
CTSA
TAGLN3
DDX46
MGST1
WNT5B
STRADA
DUSP12
PEX14
SPIN1
PLEKHA6
CCNDBP1
REST
ACOX2
RFFL
BAK1
KRTAP4-12
OTUD7B
CASC3
DUSP4
NDUFS7
SOX6
ZBTB45
GCK
GPX3
PIM1
STRA6
DRAP1
C11orf68
TRIP12
FBXO36
PCF11
ABHD2
MTRNR2L8
MTRNR2L2
SPATC1L
FLOT1
SP2
C16orf91
DHRS3
GPR108
TTI2
WDR74
HOXA2
DNM2
ID2
P4HB
TEPSIN
NDUFAF8
MINDY2
TBX2
RAB5B
KANSL3
STX18
DONSON
DOLPP1
CAMTA1
CBFA2T2
ATF6
UPF3A
RBPJ
KATNB1
CCDC174
FRA10AC1
ZNF687
PGK1
HUS1
SMARCD2
RFX1
XKR7
DUSP6
MTMR4
GATA4
FOXP1
NRL
DPP9
TBX3
ALKBH7
CNOT2
ANKHD1-EIF4EBP3
ANKHD1
MRPS31
KIF21B
ARRDC4
PDE4D
NFKBIA
ARSG
IQSEC3
POLDIP3
TNFRSF19
RMND5A
DCAF11
SP1
NR2F1
RARG
PCNA
ZNF608
OSBP
PPCDC
STIP1
RNF207
SOD2
ATP5F1B
SLC45A4
CBX3
MDM2
LPCAT3
KMT5A
KAZALD1
MACROH2A1
GPCPD1
HNRNPD
SMIM20
CRLS1
EVI5L
EIF2AK3
MTF2
PPP6R3
KCNAB2
POLG
PKN2
KNL1
HEXIM2
DAGLB
SHF
MLEC
ANKRD28
FBXO31
SACM1L
SMG6
PRMT5
EIF3D
SLC30A4
DIABLO
NLK
RAB37
COX5A
RHBDD1
RTN4
SERPINE1
CEP41
HNMT
HMGB1
SERPINB1
TMEM101
ARHGEF10L
NCOA2
G3BP1
EFEMP2
CDS2
USP42
ARID4A
DUSP9
KIAA0319
ILF2
TXNDC11
TDRKH
HTR5A
AIFM2
TRIB1
ID1
SEC14L1
HIBADH
WTAP
LUC7L2
PRKACA
ARHGAP4
MBD2
ROGDI
NRSN2
NR2C1
BFSP1
TOP2A
TCTEX1D4
BTBD19
TIGD1
EIF4E2
HMGCS1
IQGAP2
RNF149
PRDM10
USPL1
SH3BP2
IRF9
PIKFYVE
ING1
GOT1
TBL1X
INAFM2
TMEM60
PHTF2
RASSF2
LRCH4
FBXO24
EIF1B
HES3
BHLHE40
CCDC88A
TUBGCP3
ANKS4B
NANP
B4GAT1
CYB5R4
LCK
ACYP1
HNRNPA2B1
MAF1
SCAP
CMSS1
GFOD1
EPM2A
EXOSC4
YTHDF2
STX16
TSPAN4
TUBB4B
MFSD11
HPCAL1
LBX2
FAAP24
CEP89
POLR3E
ICAM1
PCTP
PARK7
SEPTIN9
PRDM12
PCGF1
ANP32E
DLC1
DCAF7
CELSR3
MPND
ADAP1
NEO1
HSP90B1
ZC2HC1C
LTBR
UBE2C
SRCAP
LOC730183
GPATCH8
IRS1
CALM2
GBA
HNRNPC
TANK
TRAF4
ATP23
MPV17L2
SLC25A19
CDC42EP3
ARNTL
SHB
CLK1
CLCN3
CCDC59
H4C12
MVD
HSPE1-MOB4
HSPE1
HSPD1
CYCS
ZNF148
DDX1
HECTD4
ZCCHC3
SNX3
NCBP2AS2
NCBP2
MTRF1L
PRR14
YARS1
S100PBP
LRRC59
CCDC107
DNAJB1
POLR2J3
TMEM94
KIAA0319L
HNRNPUL1
TCF4
SERPINB9
ZNF740
CSAD
TCERG1
GGT1
ARIH2
KPNB1
FMC1-LUC7L2
FMC1
NKIRAS1
C8orf37
GLRX5
NFE2
ZBTB18
STAT3
FILIP1L
KHSRP
NAT8
BAZ1B
JUP
FAM227B
DTWD1
NRSN1
ACVR1
GATD3B
GATD3A
CIC
ETV4
MYADM
NBPF1
MSMO1
ATXN1L
ELOVL6
RSRC1
NCOA7
FBXO41
CCNL1
POLR3A
RAI14
CCPG1
C15orf65
VOPP1
LAPTM5
LNPEP
RAB11A
MBD6
ARID5A
TRIP4
DCP1A
NUF2
PXMP4
MFSD6
CEBPE
SRSF2
KAT7
ZNF219
SLX1B
SLX1A
FASTKD1
BOLA2B
ARHGEF1
SKIV2L
NELFE
DYNLT1
CD24
PSMD9
HPD
HINT2
TOMM40
SIRT4
MEF2C
USP3
ACTL6A
TMEM9
IL6ST
TLN1
CREB3
L1CAM
RGS12
SLC7A5
PSMD3
MANF
HEBP2
MRPL4
HBP1
RASSF5
LONRF3
SKA2
PRR11
C3
OTUD4
CDCA7L
GFRA3
CALR
PARP2
GLRA1
HMGN4
CLTC
TMEM86A
SLCO4C1
ADAM17
GTF2H2C_2
GSTA4
EEF1AKNMT
TOP2B
PKDCC
TRIM44
HSPA5
AK2
TBRG4
RBM15
BOLA2
BHLHA15
RAD50
LOC100289561
ARMC1
HNRNPL
AP3M2
CNPY3
PGP
C16orf54
ELF1
LDLR
RPS6KA1
MAP11
MFN2
KDM1A
NR1D2
PEX3
CPLX2
ADAT2
AOPEP
UBAP2
NBN
TIGD2
OPA1
PSMF1
ADRM1
CABIN1
C1RL
BAIAP2
PKM
H6PD
DYNLL1
STT3A
IARS1
ERRFI1
C11orf24
PXYLP1
CYBA
TXNRD1
DIAPH1
YIF1A
BRD2
TMEM259
SPSB3
PARL
H4C8
KEAP1
SNRPF
NCDN
POR
H2AZ2
ZNF292
KMT5C
BOLA2-SMG1P6
BIN2
USP15
SLC24A1
INTS14
IQCH
AAGAB
AKIRIN1
RPS6KB2
IBTK
PWWP2A
GTF2H2
RFESD
GBE1
SLC11A2
CYP1A1
RNASEH1
KAT6A
E2F3
SERTAD2
NADK
NBEAL2
H4C15
H4C14
MAPKAPK3
CISH
TMCO6
ADGRG3
GATAD2A
DENND4B
MAP3K3
SEMA5B
MFSD8
ITFG2
ABHD18
AKAP1
MED9
CDKN2D
MTHFD1L
CEP70
PIWIL2
VIRMA
TMBIM6
GRHL3
SH3TC1
SEPTIN2
HDLBP
ACAT2
WDR25
WARS1
TMEM222
DIAPH3
MAN2C1
LEKR1
CNOT1
SPAG7
NIBAN2
ZNF77
AGT
GTF2H2C
ZFYVE21
XRCC3
HESX1
MAD2L1BP
PIK3AP1
DZIP3
CIP2A
MTHFR
WBP4
NME1-NME2
NME1
WNT10B
PTP4A2
CD38
TOM1L2
DRC3
SLC35E2A
EIF4A3
CLIC4
PLIN2
GRWD1
SRPRA
UGT2A3
NFE2L1
FGFRL1
FAM110A
TMEM217
TBC1D22B
C12orf65
LFNG
IDH1
FGR
MED23
RPS8
RNF139
GFER
MTMR12
HNRNPA1
TRMT6
MCM8
BCAR3
SLC25A25
H4C3
TMX2
MED19
PEX2
TRIAP1
FLAD1
ZDHHC4
MIA2
FGA
MRPS23
SERPINB6
CX3CL1
STMN3
RNF34
H2AX
MSANTD4
DDX3X
CLK2
VANGL2
TOB2
ZC3H6
ARFGAP2
PCK1
ELMO1
SLC51B
IFRD2
PDK2
AURKAIP1
DUS1L
C6orf89
KATNA1
UBL7
TOP1MT
PLEKHA7
PHF8
RCL1
PPP1R13B
THUMPD3
PMPCB
SDE2
SLC25A6
NFE2L2
C6orf136
IL27
SLC33A1
BDH1
MLLT11
CDC42SE1
TBCCD1
MGST2
ASB1
SLC25A45
HAL
SHFL
TRAF2
RECQL
GOLT1B
STK11
SPATA1