ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10131662 | Bronchial tracheal epithelial cells
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◣ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

INO80D
WDR74
SNX16
ZFX
GBA
KMT5B
FBXW4
MT2A
SERPINE1
DDX17
HNRNPR
MCL1
MTRNR2L8
DUSP1
ANP32B
RBL1
TXNDC15
HNRNPA3
ASB1
NAA38
CHD3
HNRNPUL1
HEXIM2
MTA3
TBL1XR1
TRIB3
GTF2I
DEK
GABPB2
XBP1
FAIM
DDIT4
EIF4G1
SNRPB
ZC3H4
SEPHS1
RIN3
PUM2
CSNK1E
ZC3H11A
EIF2D
FLOT1
IER3
ZNF532
QSER1
B4GALT7
SSRP1
BAZ1B
PPIA
RAD50
NAA25
ATF1
EIF5A
SCMH1
PRRC2A
ACVR2B
RNASEH2B
RAN
KDM3B
ASXL1
ZNF282
HNRNPF
DUS1L
BRWD1
CHD1
NSD1
TET3
ZNF407
FABP6
DPY19L4
KMT2A
NEMP2
MTRNR2L2
PRTFDC1
KEAP1
PRCC
FAM169A
FBXO4
SF3B3
COG4
ADNP
RNF220
NFKBIA
UNC50
COA5
HSPA8
ZMYND11
GOLM2
HMGB1
SIK1B
SIK1
YARS1
S100PBP
TCERG1
PCBP1
TRIM52
USP24
UBE2L3
EZH2
RAD23A
ZNF22
NFYC
ACTB
SCAF8
KPNB1
CASC3
TGFBRAP1
WDR76
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
C17orf75
TUBGCP3
HINT1
TAF4
RPL12
LRSAM1
ELOB
ARPP19
KRT17
RCOR3
SFT2D3
BEND3
ERAP1
ACBD6
DPYSL2
PPP2R2A
CBX3
HNRNPA2B1
JUNB
SENP6
TMEM268
SEPTIN8
HDGF
MACROH2A1
DDX39B
BOD1
EEF2
SSBP2
GSTO1
RPTOR
HECTD1
ZNF280D
PRDM5
STAT6
PHIP
POGZ
RPS5
ZSCAN12
SLC9B2
COMT
VPS54
PRRC2B
MARCHF7
RGPD2
RGPD1
FAM228B
RAD54L2
AZIN1
PFN4
ZBTB38
ZCCHC3
ZFR
C4orf36
RPL5
GCN1
LNPEP
UNK
RANGAP1
PDXDC1
ANKRD40
ZFP62
ZC3H7B
ACSF3
SFXN1
TLK2
HMGA2
NRF1
VPS36
FBXL17
CXCL2
RPS23
ATP6AP1L
PFKM
SENP1
ZNF274
SMARCE1
NSMAF
NAE1
VDAC1
SRSF6
DERA
STAG1
MCMBP
MANSC4
KLHL42
HDDC2
PAIP1
ZNF444
MAN2C1
HDGFL3
BRIX1
SLC38A2
SLC30A5
EIF3A
BFSP1
HNRNPAB
ULK2
PTBP1
GTF2IRD2
SREK1
RNF145
TBC1D9B
FRA10AC1
LEMD2
CEBPG
DENND6B
CUL1
KIAA1614
MTMR2
CSNK1D
GMEB2
LRRK1
ZFAT
TFAP4
KAT6A
ARSB
MRPL28
POGLUT3
MDM4
E2F4
INTS2
AVEN
XPC
LSM3
PHF3
ZBTB7A
MZT2A
HMGA1
INO80
COMMD10
CNIH1
ARL10
U2AF1L5
U2AF1
GMEB1
CEBPB
GJC1
PPP4R3A
UQCRH
LRRC41
FOSL1
GEMIN7
RPL11
SELENOT
MFSD14A
CCDC71
ZC3H6
MAP3K20
HSPA9
WDR24
RBM15B
ELAC1
TLK1
SPIN1
OCIAD1
PPRC1
TRA2B
ZNF518A
EEF1A1
RPL37A
RAD23B
RBM39
MRPL23
CYB561
STK24
NFKB1
CEBPD
PHF2
ZNF710
MTF2
ARL6IP4
PDS5B
CASD1
DYRK1A
TPM4
CERS2
PIEZO1
CXCL3
ACYP2
BTF3
REV1
SQSTM1
CDT1
SRCAP
LOC730183
SDHAF2
CPSF7
NUP153
ZC3HC1
MCM3
MRPS2
C9orf116
DYNLL1
KDM2A
SRSF9
ERBIN
RPL35
ARPC5L
SMARCD2
PRKAA1
B4GALT2
RNPS1
RNF214
PCSK7
NPEPL1
MGAT4B
HNRNPU
UBE2E3
C19orf12
MSL1
ATXN10
DDX50
RRM1
PPIP5K2
NNT
PKDREJ
STX18
ATF4
EIF3B
CHAMP1
E2F1
H4C11
UIMC1
REPIN1
ZMYM4
MPPE1
PRDM2
G0S2
KDM5C
GTF3C6
DOT1L
SETD2
N4BP2
EIF3E
SRSF1
ARHGEF7
TPRA1
ATG10
ATXN7L3B
ZNF236
ARPIN-AP3S2
ARPIN
GPX7
RPS2
NHLRC2
DCLRE1A
MIER3
STC2
SAR1B
RPS8
FBXO38
UBAP2L
C1orf43
SMAD5
BCAR3
RFX8
MSRB2
SORBS3
ZNF618
TGFB1I1
RHOB
PPIF
HDLBP
SEPTIN2
MPDZ
PBLD
HNRNPH3
GLUL
NUFIP2
ITGA3
NOTCH2
PLEKHM3
NKIRAS1
RPL15
RBM14-RBM4
RBM14
YBX3
SHROOM1
TASOR
LAMC2
SYDE1
TRMT2A
RANBP1
PDIA6
CDC42EP1
NFE2L2
ZFAND6
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
RMI1
HNRNPK
TIPARP
TMEM42
TCHP
ARAP3
TSC1
GFI1B
RPSA
DDX19B
AARS1
RPS4X
GCFC2
IFIT5
ZNF747
TMEM68
TGS1
SRRM2
PAFAH1B2
TMEM98
YBEY
MCM3AP
CANX
TNPO1
RIF1
NCOA7
BEGAIN
FOXE3
GABPB1
MRPL1
BRF1
BTBD6
HENMT1
ZNF441
NDFIP1
GSAP
STAG3
GPC2
STX16
CAPN15
GTF2IRD2B
TDRD3
EI24
TEX22
BRPF3
SDC1
VAPA
ING4
RPS14
ARIH2
DNPH1
DCTD
EGLN2
AKT1
MRPL40
HIRA
ITGB1
RMI2
NFAT5
MDK
KCTD15
KMT2D
KANSL1
RPL10A
MARCHF6
NFKBIZ
C5orf24
SREK1IP1
CWC27
ZNF354B
RPS6KC1
PDCD7
ZNF768
GPD2
UBC
ALKBH3
ZWILCH
RPL4
IRF2
EP300
EEF1AKMT1
NDRG2
EIF4G3
ARHGEF40
NME1
SECISBP2
SLC24A1
CRADD
TYMSOS
TYMS
CCNE1
IFNGR2
STS
PUDP
SCAND1
YTHDF2
DNMT1
EBAG9
AGPAT3
HMGN1
HMBOX1
INTS9
RPL37
GGACT
TREX1
RPLP1
EDF1
ATE1
EIF4E
CNBP
SCLY
MAML1
IMPACT
KRCC1
CDC42
YWHAE
MTRNR2L9
BACH1
DUSP16
PCNP
ENOSF1
SCCPDH
RNF169
ZNF497
WSB2
POLG
TOB1
ZNF770
SDF4
B3GALT6
PGGT1B
CTPS1
TMEM17
RCN1
NFIC
MACROH2A2
GTF3C3
RDH14
LARP1
GATAD2B
TMCC1
RPS7
RPS19
H4C12
ECPAS
AMPD3
TBKBP1
RPS15
NUDC
BPTF
DCUN1D1
TRAF3
PXN
SAMD14
MAD2L1BP
GTPBP2
SLC3A2
ATXN7L2
ZNF717
ARIH1
URGCP
SLC7A1
URGCP-MRPS24
EIF4A1
KMT2B
U2SURP
EIF4B
TAF1D
C11orf54
TK2
GOLM1
CHST3
MCM7
AP4M1
ITGB3BP
EFCAB7
EXOSC6
TMEM168
ARRDC3
CCDC102A
PTPN9
AKAP10
PABPN1
LSM14A
RAC1
ARHGAP21
MRPL3
SNRPD1
MTHFD2
KATNBL1
TRIM44
GFER
SMC1B
RIBC2
SKIDA1
BIRC3
SMYD2
ZBTB47
DDX46
ZNF32
PTMA
UBA2
ANXA2
PPP3CC
ZC3H12C
AGO2
ACOT2
NAGPA
UBOX5
FASTKD5
GDI2
HNRNPD
PSMD14
WTIP
RNF135
ODC1
XPOT
RAD52
ZNF398
ZNF425
NRL
OTUD4
TNRC6A
PCK2
RPL7L1
NAPEPLD
DICER1
ZYX
UBE2J1
RDX
PATL1
FAM131B
STAU1
ADPRS
TOP2B
ZBTB4
POLR2A
LATS1
DYNC2I2
MIDEAS
SLC20A1
ATIC
DDX6
TFDP1
PHGDH
CTBP2
SUSD1
DCAF10
ZER1
PDE4DIP
GAPDH
SLC39A9
ERH
POLD2
HNRNPDL
ENOPH1
ITPRIP
TARS1
ZNF496
BASP1
VAMP2
KHDC1
SNAI2
DDX1
RWDD1
ZMPSTE24
PCIF1
HERC3
PYURF
PIGY
MAGOHB
SMC3
KLHL9
FOXK1
BCL9L
MMP14
KRT7
POLR2J3
ZNF839
GABPA
ATP5PF
RUSF1
RHBDD3
EWSR1
SMIM15
ZFHX3
UCK2
TCF25
CPLANE1
FAM160B1
SMAD1
TNKS
VPS52
RPS18
XRCC5
ZBTB40
CDC7
HLTF
RAD21
FBLN7
LRRC37A3
ZNF623
ZDHHC6
VTI1A
SLC7A5
FOXRED2
RACK1
CDKN1A
MARK2
AXL
ZNF143
NGRN
UQCRFS1
NSD2
SPIDR
SNX25
MPG
GPR150
FAM207A
SMIM10L1
PRH1-TAS2R14
PRH1
THBS4
MTX3
CIPC
CHEK1
CNOT3
MIS18BP1
VWA8
PHC3
WDR82
ZBED5
RBM26
ZC3HAV1L
NFYB
TIRAP
COLGALT1
ZNF629
MCIDAS
DNAJA4
NOTCH1
ZC3H7A
ZNF341
EPM2A
PTHLH
GIGYF2
BRD4
MYO1C
SPIRE1
AFF4
FKBP5
MBD3
EIF4H
CTCF
TMX4
CSNK1G3
POU6F1
FBLIM1
POMZP3
ELK4
C1orf53
NBPF15
MICOS10-NBL1
MICOS10
C7orf26
MTHFD1L
MET
RAP1GDS1
SOCS6
STRN4
FKRP
MYO5A
PYGO1
ACOT1
TFG
BRD2
LIG3
UBE2R2
F3
NIPSNAP2
GIGYF1
TMEM11
COMMD1
CCT4
SNX19
ATXN2
ZNF507
ATXN7
TM9SF3
DIS3L
LPGAT1
HHIPL1
THOC7
ABR
RPS3
TCF12
GOLGA3
TMEM254
EXOSC9
GADD45GIP1
RCC2
MKNK2
TENT2
RND3
ZNF316
AXIN1
RPL22
LONP1
CATSPERD
NACA
FAF2
ENO1
CUEDC1
PLEKHM2
TMEM199
POLDIP2
C2orf42
POLR2M
SNX5
MGME1
MYH9
RPL23
HNRNPA0
SGK3
ITGB8
TBCA
YAP1
PAFAH1B1
CCN2
HOXB7
TRIP11
TRDMT1
SLC35E2B
NOXA1
FER
SP1
PHC2
SMN2
SMN1
ACSL3
PTP4A1
ADO
GANAB
ANXA4
GOLPH3
EEF1G
PRR12
HOXA10
NMNAT1
LZIC
FAF1
ERCC6L2
ZZEF1
CYB5D2
TMSB10
GADD45B
DGUOK
RBBP6
TIMELESS
CDC16
AFG3L2
H6PD
MARVELD1
COPZ2
FBXW11
SFSWAP
MRPS30
PRKAR1B
RBM12
CPNE1
DUT
CREBZF
MCM5
YAF2
NR3C1
CAPZB
TRAPPC12
NCOA6
SLC22A15
SIRPA
MTA1
ANKRD65
DCAF8
MATR3
MYH7B
GSS
ANP32E
TANK
SLC35A4
APBB3
HECTD2
DNAJC5
IGFBP7
HIVEP2
PITX1
AURKAIP1
CCNC
CLINT1
TM9SF4
DHX15
PHLDA1
UBE3C
FBXL5
NANP
LMNB1
MSH6
EGFR
C14orf93
MAIP1
SOX6
C11orf58
SUGP1
MAU2
GALK2
MORF4L1
COPS2
NUCKS1
PABPC4
TRAPPC8
FNTA
DAZAP1
MTLN
HIP1
CORO1C
ZFP36L1
UPF1
LITAF
GNL3L
PAQR3
KLHL5
CTNNB1
GNB2
SDCCAG8
CEP170
PSMD6
OGA
LUC7L3
TMTC4
DNMT3A
CLTC
CYCS
PARK7
SRSF2
MFSD11
LRRC59
AP1G1
OVCA2
PDCD6
SPECC1
CCZ1B
NEK9
MCCC2
HMGN2
JPT2
R3HCC1
MFSD3
DRAP1
C11orf68
ICMT
GCNT4
ZNF384
BMS1
FAM193A
USP40
ERCC3
ZNF121
ITSN2
CTNNA1
SLC36A4
FBN2
ZBTB14
CHPT1
FAM114A1
WDR43
R3HDM2
DEGS1
SLC15A4
HIPK3
SMARCA4
SMC1A
RIBC1
CAPN2
ADCY3
CKS2
MRPL24
PCBP2
THOC3
RFX3
ATP9B
NOP56
AGK
CPSF1
KPNA1
CYREN
NOP58
RABGAP1
RBM15
HLCS
ZBED8